Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:36:51 (14068): wrapper (7.7.26015): starting
04:36:51 (14068): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 04:36:51] Arguments: --nthreads 8
[2026-01-10 04:36:51] Threads: 8
[2026-01-10 04:36:51] Checking for CVMFS
[2026-01-10 04:36:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 04:36:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 04:36:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 04:36:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 04:36:52] 2.11.0.0 8301 129926 103492 154966 1 128 3299378 4096001 453 130560 2 5068671 99.275 7376458 466 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 04:36:52] CVMFS is ok
[2026-01-10 04:36:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 04:36:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 04:36:52] Further information can be found at the LHC@home message board.
[2026-01-10 04:36:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 04:36:52] Checking for apptainer binary...
[2026-01-10 04:36:52] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 04:36:52] apptainer is not installed, using version from CVMFS
[2026-01-10 04:36:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 04:36:52] WARNING: Environment variable TMPDIR already has value [/tmp/job_11011010/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node228
[2026-01-10 04:36:52] apptainer works
[2026-01-10 04:36:52] Set ATHENA_PROC_NUMBER=8
[2026-01-10 04:36:52] Set ATHENA_CORE_NUMBER=8
[2026-01-10 04:36:52] Starting ATLAS job with PandaID=6964539390
[2026-01-10 04:36:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11011010/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:57:04]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:57:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 04:57:04]  replicas=None
[2026-01-10 04:57:04]  scope=mc16_13TeV
[2026-01-10 04:57:04]  status=None
[2026-01-10 04:57:04]  status_code=0
[2026-01-10 04:57:04]  storage_token=
[2026-01-10 04:57:04]  surl=/tmp/job_11011010/atlas/pilot/slots/0/PanDA_Pilot-6964539390/log.47962010._001954.job.log.tgz.1
[2026-01-10 04:57:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/bc/bb/log.47962010._001954.job.log.tgz.1
[2026-01-10 04:57:04]  workdir=None
[2026-01-10 04:57:04] ]
[2026-01-10 04:57:04] 2026-01-10 03:56:05,638 | INFO     | transferring file log.47962010._001954.job.log.tgz.1 from /tmp/job_11011010/atlas/pilot/slots/0/PanDA_Pilot-6964539390/log.47962010._001954.job.log.tgz.1 to /tmp/j
[2026-01-10 04:57:04] 2026-01-10 03:56:05,638 | INFO     | executing command: /usr/bin/env mv /tmp/job_11011010/atlas/pilot/slots/0/PanDA_Pilot-6964539390/log.47962010._001954.job.log.tgz.1 /tmp/job_11011010/atlas/pilot/sl
[2026-01-10 04:57:04] 2026-01-10 03:56:05,646 | INFO     | adding to output.list: log.47962010._001954.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/bc/bb/log.47962010._001954.job.log.tgz.
[2026-01-10 04:57:04] 2026-01-10 03:56:05,646 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 04:57:04] 2026-01-10 03:56:05,647 | INFO     | summary of transferred files:
[2026-01-10 04:57:04] 2026-01-10 03:56:05,647 | INFO     |  -- lfn=log.47962010._001954.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 04:57:04] 2026-01-10 03:56:05,647 | INFO     | stage-out finished correctly
[2026-01-10 04:57:04] 2026-01-10 03:56:05,888 | INFO     | time since job start (1148s) is within the limit (349056.0s)
[2026-01-10 04:57:04] 2026-01-10 03:56:06,797 | WARNING  | process 1594 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 04:57:04] 2026-01-10 03:56:06,797 | INFO     | using path: /tmp/job_11011010/atlas/pilot/slots/0/PanDA_Pilot-6964539390/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:57:04] 2026-01-10 03:56:06,895 | INFO     | number of running child processes to parent process 1594: 1
[2026-01-10 04:57:04] 2026-01-10 03:56:06,895 | INFO     | maximum number of monitored processes: 16
[2026-01-10 04:57:04] 2026-01-10 03:56:07,892 | INFO     | time since job start (1150s) is within the limit (349056.0s)
[2026-01-10 04:57:04] 2026-01-10 03:56:08,275 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 04:57:04] 2026-01-10 03:56:09,398 | INFO     | monitor loop #90: job 0:6964539390 is in state 'finished'
[2026-01-10 04:57:04] 2026-01-10 03:56:09,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 04:57:04] 2026-01-10 03:56:09,897 | INFO     | time since job start (1152s) is within the limit (349056.0s)
[2026-01-10 04:57:04] 2026-01-10 03:56:09,963 | INFO     | job 6964539390 has state=finished
[2026-01-10 04:57:04] 2026-01-10 03:56:09,963 | INFO     | preparing for final server update for job 6964539390 in state='finished'
[2026-01-10 04:57:04] 2026-01-10 03:56:09,963 | INFO     | this job has now completed (state=finished)
[2026-01-10 04:57:04] 2026-01-10 03:56:09,963 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 04:57:04] 2026-01-10 03:56:09,964 | INFO     | log transfer has been attempted: DONE
[2026-01-10 04:57:04] 2026-01-10 03:56:09,964 | INFO     | job 6964539390 has finished - writing final server update
[2026-01-10 04:57:04] 2026-01-10 03:56:09,964 | INFO     | total number of processed events: 50 (read)
[2026-01-10 04:57:04] 2026-01-10 03:56:09,964 | INFO     | executing command: lscpu
[2026-01-10 04:57:04] 2026-01-10 03:56:09,995 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 04:57:04] 2026-01-10 03:56:11,714 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 04:57:04] 2026-01-10 03:56:11,718 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2739.3707343749998
[2026-01-10 04:57:04] 2026-01-10 03:56:11,723 | INFO     | using path: /tmp/job_11011010/atlas/pilot/slots/0/PanDA_Pilot-6964539390/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:57:04] 2026-01-10 03:56:11,724 | INFO     | extracted standard info from prmon json
[2026-01-10 04:57:04] 2026-01-10 03:56:11,724 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 04:57:04] 2026-01-10 03:56:11,724 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 04:57:04] 2026-01-10 03:56:11,724 | INFO     | fitting pss+swap vs Time
[2026-01-10 04:57:04] 2026-01-10 03:56:11,724 | INFO     | sum of square deviations: 532103.0
[2026-01-10 04:57:04] 2026-01-10 03:56:11,724 | INFO     | sum of deviations: -51566014.5
[2026-01-10 04:57:04] 2026-01-10 03:56:11,724 | INFO     | mean x: 1768016875.5
[2026-01-10 04:57:04] 2026-01-10 03:56:11,724 | INFO     | mean y: 2613189.5833333335
[2026-01-10 04:57:04] 2026-01-10 03:56:11,724 | INFO     | intersect: 171340838755.4563
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | chi2: 0.017378965287071946
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | current memory leak: -96.91 B/s (using 12 data points, chi2=0.02)
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | could have reported an average CPU frequency of 2500 MHz (4 samples)
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | ..............................
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | . Timing measurements:
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | . get job = 0 s
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | . initial setup = 1 s
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | . payload setup = 2 s
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | . stage-in = 0 s
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | . payload execution = 1129 s
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | . stage-out = 0 s
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | . log creation = 0 s
[2026-01-10 04:57:04] 2026-01-10 03:56:11,725 | INFO     | ..............................
[2026-01-10 04:57:04] 2026-01-10 03:56:11,902 | INFO     | time since job start (1154s) is within the limit (349056.0s)
[2026-01-10 04:57:04] 2026-01-10 03:56:12,233 | INFO     | 
[2026-01-10 04:57:04] 2026-01-10 03:56:12,233 | INFO     | job summary report
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | --------------------------------------------------
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | PanDA job id: 6964539390
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | task id: 47962010
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | errors: (none)
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | pilot state: finished 
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | transexitcode: 0
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | exeerrorcode: 0
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | exeerrordiag: 
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | exitcode: 0
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | exitmsg: OK
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | cpuconsumptiontime: 7389 s
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | nevents: 50
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | neventsw: 0
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | pid: 1594
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | pgrp: 1594
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | corecount: 8
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | event service: False
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | sizes: {0: 2284695, 2: 2284957, 11: 2284985, 1136: 2319439, 1139: 2319439, 1142: 2319685}
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | --------------------------------------------------
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | 
[2026-01-10 04:57:04] 2026-01-10 03:56:12,234 | INFO     | executing command: ls -lF /tmp/job_11011010/atlas/pilot/slots/0
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 04:57:04] 2026-01-10 03:56:12,243 | INFO     | job 6964539390 has completed (purged errors)
[2026-01-10 04:57:04] 2026-01-10 03:56:12,244 | INFO     | overall cleanup function is called
[2026-01-10 04:57:04] 2026-01-10 03:56:13,250 | INFO     | --- collectZombieJob: --- 10, [1594]
[2026-01-10 04:57:04] 2026-01-10 03:56:13,251 | INFO     | zombie collector waiting for pid 1594
[2026-01-10 04:57:04] 2026-01-10 03:56:13,251 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 04:57:04] 2026-01-10 03:56:13,251 | INFO     | collected zombie processes
[2026-01-10 04:57:04] 2026-01-10 03:56:13,251 | INFO     | will attempt to kill all subprocesses of pid=1594
[2026-01-10 04:57:04] 2026-01-10 03:56:13,351 | INFO     | process IDs to be killed: [1594] (in reverse order)
[2026-01-10 04:57:04] 2026-01-10 03:56:13,389 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:57:04] 2026-01-10 03:56:13,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:57:04] 2026-01-10 03:56:13,393 | INFO     | did not find any defunct processes belonging to 1594
[2026-01-10 04:57:04] 2026-01-10 03:56:13,396 | INFO     | did not find any defunct processes belonging to 1594
[2026-01-10 04:57:04] 2026-01-10 03:56:13,396 | INFO     | ready for new job
[2026-01-10 04:57:04] 2026-01-10 03:56:13,396 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:57:04] 2026-01-10 03:56:13,397 | INFO     | ***************************************
[2026-01-10 04:57:04] 2026-01-10 03:56:13,397 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:57:04] 2026-01-10 03:56:13,397 | INFO     | ***************************************
[2026-01-10 04:57:04] 2026-01-10 03:56:13,397 | INFO     | 
[2026-01-10 04:57:04] 2026-01-10 03:56:13,411 | INFO     | architecture information:
[2026-01-10 04:57:04] 2026-01-10 03:56:13,412 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:57:04] 2026-01-10 03:56:13,418 | INFO     | cat /etc/os-release:
[2026-01-10 04:57:04] NAME="CentOS Linux"
[2026-01-10 04:57:04] VERSION="7 (Core)"
[2026-01-10 04:57:04] ID="centos"
[2026-01-10 04:57:04] ID_LIKE="rhel fedora"
[2026-01-10 04:57:04] VERSION_ID="7"
[2026-01-10 04:57:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:57:04] ANSI_COLOR="0;31"
[2026-01-10 04:57:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:57:04] HOME_URL="https://www.centos.org/"
[2026-01-10 04:57:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:57:04] 
[2026-01-10 04:57:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:57:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:57:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:57:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:57:04] 
[2026-01-10 04:57:04] 2026-01-10 03:56:13,418 | INFO     | ***************************************
[2026-01-10 04:57:04] 2026-01-10 03:56:13,921 | INFO     | executing command: df -mP /tmp/job_11011010/atlas/pilot/slots/0
[2026-01-10 04:57:04] 2026-01-10 03:56:13,927 | INFO     | sufficient remaining disk space (224701448192 B)
[2026-01-10 04:57:04] 2026-01-10 03:56:13,927 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:57:04] 2026-01-10 03:56:13,927 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:57:04] 2026-01-10 03:56:13,927 | INFO     | update_server=False
[2026-01-10 04:57:04] 2026-01-10 03:56:13,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:57:04] 2026-01-10 03:56:13,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:57:04] 2026-01-10 03:56:14,087 | INFO     | all job control threads have been joined
[2026-01-10 04:57:04] 2026-01-10 03:56:14,224 | INFO     | all data control threads have been joined
[2026-01-10 04:57:04] 2026-01-10 03:56:14,327 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:57:04] 2026-01-10 03:56:14,403 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 04:57:04] 2026-01-10 03:56:14,403 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 04:57:04] 2026-01-10 03:56:14,403 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:57:04] 2026-01-10 03:56:14,403 | INFO     | will abort loop
[2026-01-10 04:57:04] 2026-01-10 03:56:14,932 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:15,034 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:15,078 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:15,092 | INFO     | [job] control thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:15,229 | INFO     | [data] control thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:15,281 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:15,408 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:15,422 | INFO     | all payload control threads have been joined
[2026-01-10 04:57:04] 2026-01-10 03:56:15,704 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:15,932 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:16,255 | INFO     | [job] validate thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:16,386 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:16,415 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:16,428 | INFO     | [payload] control thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:16,784 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:57:04] 2026-01-10 03:56:17,789 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:18,332 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:24,912 | INFO     | job.realtimelogging is not enabled
[2026-01-10 04:57:04] 2026-01-10 03:56:25,917 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:57:04] 2026-01-10 03:56:45,093 | INFO     | PID=19936 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 04:57:04] 2026-01-10 03:56:45,093 | INFO     | .. there are 4 such processes running
[2026-01-10 04:57:04] 2026-01-10 03:56:45,093 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:57:04] 2026-01-10 03:56:45,093 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:57:04] 2026-01-10 03:56:45,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:57:04] 2026-01-10 03:56:58,367 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:57:04] 2026-01-10 03:56:59,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058717952)>']
[2026-01-10 04:57:04] 2026-01-10 03:57:00,167 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:57:04] 2026-01-10 03:57:00,167 | INFO     | [monitor] control thread has ended
[2026-01-10 04:57:04] 2026-01-10 03:57:04,696 | INFO     | all workflow threads have been joined
[2026-01-10 04:57:04] 2026-01-10 03:57:04,696 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:57:04] 2026-01-10 03:57:04,696 | INFO     | traces error code: 0
[2026-01-10 04:57:04] 2026-01-10 03:57:04,696 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:57:04] 2026-01-10 03:57:04,746 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:57:04] 2026-01-10 03:57:04,747 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:57:04] 2026-01-10 03:57:04,748 [wrapper] pilotpid: 19936
[2026-01-10 04:57:04] 2026-01-10 03:57:04,750 [wrapper] Pilot exit status: 0
[2026-01-10 04:57:04] 2026-01-10 03:57:04,753 [wrapper] pandaids: 6964539390
[2026-01-10 04:57:04] 2026-01-10 03:57:04,777 [wrapper] cleanup supervisor_pilot  4289 19937
[2026-01-10 04:57:04] 2026-01-10 03:57:04,778 [wrapper] Test setup, not cleaning
[2026-01-10 04:57:04] 2026-01-10 03:57:04,779 [wrapper] apfmon messages muted
[2026-01-10 04:57:04] 2026-01-10 03:57:04,780 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:57:04] 2026-01-10 03:57:04,781 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:57:04]  *** Error codes and diagnostics ***
[2026-01-10 04:57:04]     "exeErrorCode": 0,
[2026-01-10 04:57:04]     "exeErrorDiag": "",
[2026-01-10 04:57:04]     "pilotErrorCode": 0,
[2026-01-10 04:57:04]     "pilotErrorDiag": "",
[2026-01-10 04:57:04]  *** Listing of results directory ***
[2026-01-10 04:57:04] total 430480
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user    579449 Jan  9 16:55 pilot3.tar.gz
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user      5112 Jan  9 16:59 queuedata.json
[2026-01-10 04:57:04] -rwx------ 1 mf493845 unix-user     36322 Jan  9 17:00 runpilot2-wrapper.sh
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user       100 Jan 10 02:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:57:04] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 02:56 run_atlas
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user       105 Jan 10 02:56 job.xml
[2026-01-10 04:57:04] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 04:36 start_atlas.sh
[2026-01-10 04:57:04] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 04:36 shared
[2026-01-10 04:57:04] -rw-r--r-- 2 mf493845 unix-user    592616 Jan 10 04:36 input.tar.gz
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user      6391 Jan 10 04:36 init_data.xml
[2026-01-10 04:57:04] -rw-r--r-- 2 mf493845 unix-user 392712777 Jan 10 04:36 EVNT.47962006._000047.pool.root.1
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user         0 Jan 10 04:36 boinc_setup_complete
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user      8192 Jan 10 04:36 boinc_mmap_file
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user         0 Jan 10 04:36 boinc_lockfile
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user      2890 Jan 10 04:36 pandaJob.out
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user    989374 Jan 10 04:36 agis_schedconf.cvmfs.json
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user   1516240 Jan 10 04:36 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:57:04] drwx------ 5 mf493845 unix-user       440 Jan 10 04:36 pilot3
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user  41517533 Jan 10 04:55 HITS.47962010._001954.pool.root.1
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user      1012 Jan 10 04:56 memory_monitor_summary.json
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user   1117745 Jan 10 04:56 log.47962010._001954.job.log.tgz.1
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user        95 Jan 10 04:56 pilot_heartbeat.json
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user      8531 Jan 10 04:56 heartbeat.json
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user      5093 Jan 10 04:57 pilotlog.txt
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user    227592 Jan 10 04:57 log.47962010._001954.job.log.1
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user       353 Jan 10 04:57 output.list
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user       620 Jan 10 04:57 runtime_log
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user   1361920 Jan 10 04:57 result.tar.gz
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user       640 Jan 10 04:57 v7GLDmI5Ty8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkThKDmpo3Jwm.diag
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user      9220 Jan 10 04:57 runtime_log.err
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user     22392 Jan 10 04:57 stderr.txt
[2026-01-10 04:57:04] HITS file was successfully produced:
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user 41517533 Jan 10 04:55 shared/HITS.pool.root.1
[2026-01-10 04:57:04]  *** Contents of shared directory: ***
[2026-01-10 04:57:04] total 425988
[2026-01-10 04:57:04] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 04:36 start_atlas.sh
[2026-01-10 04:57:04] -rw-r--r-- 2 mf493845 unix-user    592616 Jan 10 04:36 input.tar.gz
[2026-01-10 04:57:04] -rw-r--r-- 2 mf493845 unix-user 392712777 Jan 10 04:36 ATLAS.root_0
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user  41517533 Jan 10 04:55 HITS.pool.root.1
[2026-01-10 04:57:04] -rw------- 1 mf493845 unix-user   1361920 Jan 10 04:57 result.tar.gz
04:57:05 (14068): run_atlas exited; CPU time 7392.448855
04:57:05 (14068): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN