Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:40:04 (3562331): wrapper (7.7.26015): starting
22:40:04 (3562331): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 22:40:04] Arguments: --nthreads 9
[2026-01-09 22:40:04] Threads: 9
[2026-01-09 22:40:04] Checking for CVMFS
[2026-01-09 22:40:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 22:40:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 22:40:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 22:40:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 22:40:04] 2.13.3.0 12213 94322 205624 154966 0 326 32857263 40960001 24811 16776704 0 686025495 99.684 572721453 35760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 22:40:04] CVMFS is ok
[2026-01-09 22:40:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 22:40:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 22:40:04] Further information can be found at the LHC@home message board.
[2026-01-09 22:40:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 22:40:04] Checking for apptainer binary...
[2026-01-09 22:40:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 22:40:04] Running /usr/bin/apptainer --version
[2026-01-09 22:40:04] apptainer version 1.4.5-2.el9
[2026-01-09 22:40:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 22:40:05] c7-3-35.aglt2.org
[2026-01-09 22:40:05] apptainer works
[2026-01-09 22:40:05] Set ATHENA_PROC_NUMBER=9
[2026-01-09 22:40:05] Set ATHENA_CORE_NUMBER=9
[2026-01-09 22:40:05] Starting ATLAS job with PandaID=6964539365
[2026-01-09 22:40:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:19:33]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:19:33]  status_code=0
[2026-01-09 23:19:33]  storage_token=
[2026-01-09 23:19:33]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6964539365/log.47962010._001929.job.log.tgz.1
[2026-01-09 23:19:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/fd/db/log.47962010._001929.job.log.tgz.1
[2026-01-09 23:19:33]  workdir=None
[2026-01-09 23:19:33] ]
[2026-01-09 23:19:33] 2026-01-10 04:18:52,645 | INFO     | transferring file log.47962010._001929.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6964539365/log.47962010._001929.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 23:19:33] 2026-01-10 04:18:52,645 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6964539365/log.47962010._001929.job.log.tgz.1 /tmp/boinchome/slots/2/log.47962010._001929.job
[2026-01-09 23:19:33] 2026-01-10 04:18:52,697 | INFO     | adding to output.list: log.47962010._001929.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/fd/db/log.47962010._001929.job.log.tgz.
[2026-01-09 23:19:33] 2026-01-10 04:18:52,698 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 23:19:33] 2026-01-10 04:18:52,698 | INFO     | summary of transferred files:
[2026-01-09 23:19:33] 2026-01-10 04:18:52,698 | INFO     |  -- lfn=log.47962010._001929.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 23:19:33] 2026-01-10 04:18:52,698 | INFO     | stage-out finished correctly
[2026-01-09 23:19:33] 2026-01-10 04:18:53,194 | INFO     | time since job start (2315s) is within the limit (349056.0s)
[2026-01-09 23:19:33] 2026-01-10 04:18:53,247 | WARNING  | process 3575866 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 23:19:33] 2026-01-10 04:18:53,247 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6964539365/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:19:33] 2026-01-10 04:18:54,027 | INFO     | number of running child processes to parent process 3575866: 1
[2026-01-09 23:19:33] 2026-01-10 04:18:54,027 | INFO     | maximum number of monitored processes: 14
[2026-01-09 23:19:33] 2026-01-10 04:18:55,098 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 23:19:33] 2026-01-10 04:18:55,209 | INFO     | time since job start (2317s) is within the limit (349056.0s)
[2026-01-09 23:19:33] 2026-01-10 04:18:55,837 | INFO     | job 6964539365 has state=finished
[2026-01-09 23:19:33] 2026-01-10 04:18:55,838 | INFO     | preparing for final server update for job 6964539365 in state='finished'
[2026-01-09 23:19:33] 2026-01-10 04:18:55,838 | INFO     | this job has now completed (state=finished)
[2026-01-09 23:19:33] 2026-01-10 04:18:55,838 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 23:19:33] 2026-01-10 04:18:55,838 | INFO     | log transfer has been attempted: DONE
[2026-01-09 23:19:33] 2026-01-10 04:18:55,838 | INFO     | job 6964539365 has finished - writing final server update
[2026-01-09 23:19:33] 2026-01-10 04:18:55,838 | INFO     | total number of processed events: 50 (read)
[2026-01-09 23:19:33] 2026-01-10 04:18:55,839 | INFO     | executing command: lscpu
[2026-01-09 23:19:33] 2026-01-10 04:18:55,922 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 23:19:33] 2026-01-10 04:18:56,534 | INFO     | monitor loop #167: job 0:6964539365 is in state 'finished'
[2026-01-09 23:19:33] 2026-01-10 04:18:56,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:19:33] 2026-01-10 04:18:56,828 | INFO     | PID=3567969 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-09 23:19:33] 2026-01-10 04:18:56,828 | INFO     | .. there are 27 such processes running
[2026-01-09 23:19:33] 2026-01-10 04:18:57,829 | INFO     | time since job start (2319s) is within the limit (349056.0s)
[2026-01-09 23:19:33] 2026-01-10 04:18:59,039 | INFO     | monitor loop #168: job 0:6964539365 is in state 'finished'
[2026-01-09 23:19:33] 2026-01-10 04:18:59,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:19:33] 2026-01-10 04:18:59,834 | INFO     | time since job start (2321s) is within the limit (349056.0s)
[2026-01-09 23:19:33] 2026-01-10 04:19:01,153 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 23:19:33] 2026-01-10 04:19:01,162 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3168.769781249999
[2026-01-09 23:19:33] 2026-01-10 04:19:01,204 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6964539365/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:19:33] 2026-01-10 04:19:01,205 | INFO     | extracted standard info from prmon json
[2026-01-09 23:19:33] 2026-01-10 04:19:01,205 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:19:33] 2026-01-10 04:19:01,205 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:19:33] 2026-01-10 04:19:01,206 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:19:33] 2026-01-10 04:19:01,206 | INFO     | sum of square deviations: 9225035.419354845
[2026-01-09 23:19:33] 2026-01-10 04:19:01,206 | INFO     | sum of deviations: -4010471960.225806
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | mean x: 1768017667.2258065
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | mean y: 2699784.0322580645
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | intersect: 768626879233.3962
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | chi2: 0.9741633162034997
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | current memory leak: -434.74 B/s (using 31 data points, chi2=0.97)
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | could have reported an average CPU frequency of 3174 MHz (5 samples)
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | ..............................
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | . Timing measurements:
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | . get job = 0 s
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | . initial setup = 2 s
[2026-01-09 23:19:33] 2026-01-10 04:19:01,207 | INFO     | . payload setup = 7 s
[2026-01-09 23:19:33] 2026-01-10 04:19:01,208 | INFO     | . stage-in = 0 s
[2026-01-09 23:19:33] 2026-01-10 04:19:01,208 | INFO     | . payload execution = 2288 s
[2026-01-09 23:19:33] 2026-01-10 04:19:01,208 | INFO     | . stage-out = 0 s
[2026-01-09 23:19:33] 2026-01-10 04:19:01,208 | INFO     | . log creation = 0 s
[2026-01-09 23:19:33] 2026-01-10 04:19:01,208 | INFO     | ..............................
[2026-01-09 23:19:33] 2026-01-10 04:19:01,654 | INFO     | 
[2026-01-09 23:19:33] 2026-01-10 04:19:01,654 | INFO     | job summary report
[2026-01-09 23:19:33] 2026-01-10 04:19:01,654 | INFO     | --------------------------------------------------
[2026-01-09 23:19:33] 2026-01-10 04:19:01,654 | INFO     | PanDA job id: 6964539365
[2026-01-09 23:19:33] 2026-01-10 04:19:01,654 | INFO     | task id: 47962010
[2026-01-09 23:19:33] 2026-01-10 04:19:01,654 | INFO     | errors: (none)
[2026-01-09 23:19:33] 2026-01-10 04:19:01,654 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:19:33] 2026-01-10 04:19:01,654 | INFO     | pilot state: finished 
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | transexitcode: 0
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | exeerrorcode: 0
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | exeerrordiag: 
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | exitcode: 0
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | exitmsg: OK
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | cpuconsumptiontime: 12141 s
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | nevents: 50
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | neventsw: 0
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | pid: 3575866
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | pgrp: 3575866
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | corecount: 9
[2026-01-09 23:19:33] 2026-01-10 04:19:01,655 | INFO     | event service: False
[2026-01-09 23:19:33] 2026-01-10 04:19:01,656 | INFO     | sizes: {0: 2284398, 1: 2284597, 6: 2284859, 11: 2284887, 2296: 2310674, 2298: 2319668, 2300: 2319852, 2306: 2320130}
[2026-01-09 23:19:33] 2026-01-10 04:19:01,656 | INFO     | --------------------------------------------------
[2026-01-09 23:19:33] 2026-01-10 04:19:01,656 | INFO     | 
[2026-01-09 23:19:33] 2026-01-10 04:19:01,656 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 23:19:33] 2026-01-10 04:19:01,673 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,673 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,674 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,675 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:19:33] 2026-01-10 04:19:01,675 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,675 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:19:33] 2026-01-10 04:19:01,675 | INFO     | job 6964539365 has completed (purged errors)
[2026-01-09 23:19:33] 2026-01-10 04:19:01,675 | INFO     | overall cleanup function is called
[2026-01-09 23:19:33] 2026-01-10 04:19:02,693 | INFO     | --- collectZombieJob: --- 10, [3575866]
[2026-01-09 23:19:33] 2026-01-10 04:19:02,693 | INFO     | zombie collector waiting for pid 3575866
[2026-01-09 23:19:33] 2026-01-10 04:19:02,693 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:19:33] 2026-01-10 04:19:02,693 | INFO     | collected zombie processes
[2026-01-09 23:19:33] 2026-01-10 04:19:02,693 | INFO     | will attempt to kill all subprocesses of pid=3575866
[2026-01-09 23:19:33] 2026-01-10 04:19:03,224 | INFO     | process IDs to be killed: [3575866] (in reverse order)
[2026-01-09 23:19:33] 2026-01-10 04:19:03,386 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:19:33] 2026-01-10 04:19:03,386 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:19:33] 2026-01-10 04:19:03,408 | INFO     | did not find any defunct processes belonging to 3575866
[2026-01-09 23:19:33] 2026-01-10 04:19:03,429 | INFO     | did not find any defunct processes belonging to 3575866
[2026-01-09 23:19:33] 2026-01-10 04:19:03,433 | INFO     | ready for new job
[2026-01-09 23:19:33] 2026-01-10 04:19:03,433 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:19:33] 2026-01-10 04:19:03,434 | INFO     | ***************************************
[2026-01-09 23:19:33] 2026-01-10 04:19:03,434 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:19:33] 2026-01-10 04:19:03,435 | INFO     | ***************************************
[2026-01-09 23:19:33] 2026-01-10 04:19:03,435 | INFO     | 
[2026-01-09 23:19:33] 2026-01-10 04:19:03,440 | INFO     | architecture information:
[2026-01-09 23:19:33] 2026-01-10 04:19:03,440 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:19:33] 2026-01-10 04:19:03,456 | INFO     | cat /etc/os-release:
[2026-01-09 23:19:33] NAME="CentOS Linux"
[2026-01-09 23:19:33] VERSION="7 (Core)"
[2026-01-09 23:19:33] ID="centos"
[2026-01-09 23:19:33] ID_LIKE="rhel fedora"
[2026-01-09 23:19:33] VERSION_ID="7"
[2026-01-09 23:19:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:19:33] ANSI_COLOR="0;31"
[2026-01-09 23:19:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:19:33] HOME_URL="https://www.centos.org/"
[2026-01-09 23:19:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:19:33] 
[2026-01-09 23:19:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:19:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:19:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:19:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:19:33] 
[2026-01-09 23:19:33] 2026-01-10 04:19:03,457 | INFO     | ***************************************
[2026-01-09 23:19:33] 2026-01-10 04:19:03,960 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 23:19:33] 2026-01-10 04:19:04,005 | INFO     | sufficient remaining disk space (125996892160 B)
[2026-01-09 23:19:33] 2026-01-10 04:19:04,005 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:19:33] 2026-01-10 04:19:04,005 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:19:33] 2026-01-10 04:19:04,006 | INFO     | update_server=False
[2026-01-09 23:19:33] 2026-01-10 04:19:04,006 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:19:33] 2026-01-10 04:19:04,007 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:19:33] 2026-01-10 04:19:04,052 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 23:19:33] 2026-01-10 04:19:04,052 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 23:19:33] 2026-01-10 04:19:04,052 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:19:33] 2026-01-10 04:19:04,052 | INFO     | will abort loop
[2026-01-09 23:19:33] 2026-01-10 04:19:04,601 | INFO     | all data control threads have been joined
[2026-01-09 23:19:33] 2026-01-10 04:19:05,012 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:05,066 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:05,112 | INFO     | all payload control threads have been joined
[2026-01-09 23:19:33] 2026-01-10 04:19:05,189 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:05,353 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:05,414 | INFO     | all job control threads have been joined
[2026-01-09 23:19:33] 2026-01-10 04:19:05,521 | INFO     | [job] validate thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:05,606 | INFO     | [data] control thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:05,646 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:05,755 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:19:33] 2026-01-10 04:19:06,016 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:06,095 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:06,117 | INFO     | [payload] control thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:06,248 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:06,293 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:19:33] 2026-01-10 04:19:06,383 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:06,419 | INFO     | [job] control thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:07,298 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:09,761 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:14,789 | INFO     | job.realtimelogging is not enabled
[2026-01-09 23:19:33] 2026-01-10 04:19:15,794 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:19:33] 2026-01-10 04:19:21,573 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:19:33] 2026-01-10 04:19:23,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140244908566336)>', '<ExcThread(monitor, started 140244414351104)>']
[2026-01-09 23:19:33] 2026-01-10 04:19:28,138 | INFO     | all workflow threads have been joined
[2026-01-09 23:19:33] 2026-01-10 04:19:28,139 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:19:33] 2026-01-10 04:19:28,139 | INFO     | traces error code: 0
[2026-01-09 23:19:33] 2026-01-10 04:19:28,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:19:33] 2026-01-10 04:19:33,577 | INFO     | PID=3567969 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:19:33] 2026-01-10 04:19:33,577 | INFO     | .. there are 27 such processes running
[2026-01-09 23:19:33] 2026-01-10 04:19:33,577 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:19:33] 2026-01-10 04:19:33,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:19:33] 2026-01-10 04:19:33,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:19:33] 2026-01-10 04:19:33,578 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:19:33] 2026-01-10 04:19:33,578 | INFO     | [monitor] control thread has ended
[2026-01-09 23:19:33] 2026-01-10 04:19:33,693 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:19:33] 2026-01-10 04:19:33,696 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:19:33] 2026-01-10 04:19:33,698 [wrapper] pilotpid: 3567969
[2026-01-09 23:19:33] 2026-01-10 04:19:33,700 [wrapper] Pilot exit status: 0
[2026-01-09 23:19:33] 2026-01-10 04:19:33,711 [wrapper] pandaids: 6964539365
[2026-01-09 23:19:33] 2026-01-10 04:19:33,821 [wrapper] cleanup supervisor_pilot 3830784 3567970
[2026-01-09 23:19:33] 2026-01-10 04:19:33,832 [wrapper] Test setup, not cleaning
[2026-01-09 23:19:33] 2026-01-10 04:19:33,841 [wrapper] apfmon messages muted
[2026-01-09 23:19:33] 2026-01-10 04:19:33,844 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:19:33] 2026-01-10 04:19:33,846 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:19:33]  *** Error codes and diagnostics ***
[2026-01-09 23:19:33]     "exeErrorCode": 0,
[2026-01-09 23:19:33]     "exeErrorDiag": "",
[2026-01-09 23:19:33]     "pilotErrorCode": 0,
[2026-01-09 23:19:33]     "pilotErrorDiag": "",
[2026-01-09 23:19:33]  *** Listing of results directory ***
[2026-01-09 23:19:33] total 436616
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 10:55 pilot3.tar.gz
[2026-01-09 23:19:33] -rwx------. 1 boincer umatlas     36322 Jan  9 11:00 runpilot2-wrapper.sh
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 11:00 queuedata.json
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas       100 Jan  9 22:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:19:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 22:40 run_atlas
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas       105 Jan  9 22:40 job.xml
[2026-01-09 23:19:33] -rw-r--r--. 2 boincer umatlas 392805046 Jan  9 22:40 EVNT.47962006._000046.pool.root.1
[2026-01-09 23:19:33] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 22:40 start_atlas.sh
[2026-01-09 23:19:33] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 22:40 shared
[2026-01-09 23:19:33] -rw-r--r--. 2 boincer umatlas    592610 Jan  9 22:40 input.tar.gz
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas         0 Jan  9 22:40 boinc_lockfile
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas      2890 Jan  9 22:40 pandaJob.out
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas        57 Jan  9 22:40 setup.sh.local
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas    989374 Jan  9 22:40 agis_schedconf.cvmfs.json
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas   1516240 Jan  9 22:40 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:19:33] drwx------. 5 boincer umatlas      4096 Jan  9 22:40 pilot3
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas       530 Jan  9 23:10 boinc_task_state.xml
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas      6946 Jan  9 23:18 init_data.xml
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas  47102307 Jan  9 23:18 HITS.47962010._001929.pool.root.1
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas        95 Jan  9 23:18 pilot_heartbeat.json
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas      1036 Jan  9 23:18 memory_monitor_summary.json
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas   1259816 Jan  9 23:18 log.47962010._001929.job.log.tgz.1
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas      8526 Jan  9 23:19 heartbeat.json
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:19 boinc_mmap_file
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas        27 Jan  9 23:19 wrapper_checkpoint.txt
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas       823 Jan  9 23:19 pilotlog.txt
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas    374823 Jan  9 23:19 log.47962010._001929.job.log.1
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas       353 Jan  9 23:19 output.list
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:19 runtime_log
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas   1658880 Jan  9 23:19 result.tar.gz
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas       655 Jan  9 23:19 uCALDmJ5Ty8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEgmKDmWLhnqn.diag
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas      9337 Jan  9 23:19 runtime_log.err
[2026-01-09 23:19:33] -rw-r--r--. 1 boincer umatlas     22286 Jan  9 23:19 stderr.txt
[2026-01-09 23:19:33] HITS file was successfully produced:
[2026-01-09 23:19:33] -rw-------. 1 boincer umatlas 47102307 Jan  9 23:18 shared/HITS.pool.root.1
[2026-01-09 23:19:33]  *** Contents of shared directory: ***
[2026-01-09 23:19:34] total 431820
[2026-01-09 23:19:34] -rw-r--r--. 2 boincer umatlas 392805046 Jan  9 22:40 ATLAS.root_0
[2026-01-09 23:19:34] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 22:40 start_atlas.sh
[2026-01-09 23:19:34] -rw-r--r--. 2 boincer umatlas    592610 Jan  9 22:40 input.tar.gz
[2026-01-09 23:19:34] -rw-------. 1 boincer umatlas  47102307 Jan  9 23:18 HITS.pool.root.1
[2026-01-09 23:19:34] -rw-------. 1 boincer umatlas   1658880 Jan  9 23:19 result.tar.gz
23:19:35 (3562331): run_atlas exited; CPU time 12129.310280
23:19:35 (3562331): called boinc_finish(0)

</stderr_txt>
]]>

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