Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:58:47 (1129079): wrapper (7.7.26015): starting
19:58:47 (1129079): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 19:58:47] Arguments: --nthreads 8
[2026-01-09 19:58:47] Threads: 8
[2026-01-09 19:58:47] Checking for CVMFS
[2026-01-09 19:58:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:58:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:58:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:58:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:58:49] 2.13.3.0 12388 94114 218788 154962 2 344 18500676 32935937 18660 16776704 0 415402718 99.473 553251861 38102 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 19:58:49] CVMFS is ok
[2026-01-09 19:58:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:58:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:58:49] Further information can be found at the LHC@home message board.
[2026-01-09 19:58:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:58:49] Checking for apptainer binary...
[2026-01-09 19:58:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:58:49] Running /usr/bin/apptainer --version
[2026-01-09 19:58:49] apptainer version 1.4.5-2.el9
[2026-01-09 19:58:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:58:49] c7-4-31.aglt2.org
[2026-01-09 19:58:49] apptainer works
[2026-01-09 19:58:49] Set ATHENA_PROC_NUMBER=8
[2026-01-09 19:58:49] Set ATHENA_CORE_NUMBER=8
[2026-01-09 19:58:49] Starting ATLAS job with PandaID=6964539329
[2026-01-09 19:58:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:44:49]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:44:49] 2026-01-10 01:43:59,836 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6964539329/log.47962010._001893.job.log.tgz.1 /tmp/boinchome/slots/1/log.47962010._001893.job
[2026-01-09 20:44:49] 2026-01-10 01:43:59,857 | INFO     | adding to output.list: log.47962010._001893.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/45/3a/log.47962010._001893.job.log.tgz.
[2026-01-09 20:44:49] 2026-01-10 01:43:59,857 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 20:44:49] 2026-01-10 01:43:59,858 | INFO     | summary of transferred files:
[2026-01-09 20:44:49] 2026-01-10 01:43:59,858 | INFO     |  -- lfn=log.47962010._001893.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 20:44:49] 2026-01-10 01:43:59,858 | INFO     | stage-out finished correctly
[2026-01-09 20:44:49] 2026-01-10 01:44:00,307 | INFO     | time since job start (2678s) is within the limit (349056.0s)
[2026-01-09 20:44:49] 2026-01-10 01:44:00,997 | INFO     | monitor loop #196: job 0:6964539329 is in state 'finished'
[2026-01-09 20:44:49] 2026-01-10 01:44:00,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:44:49] 2026-01-10 01:44:02,071 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 20:44:49] 2026-01-10 01:44:02,313 | INFO     | time since job start (2680s) is within the limit (349056.0s)
[2026-01-09 20:44:49] 2026-01-10 01:44:03,501 | INFO     | monitor loop #197: job 0:6964539329 is in state 'finished'
[2026-01-09 20:44:49] 2026-01-10 01:44:03,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:44:49] 2026-01-10 01:44:03,744 | INFO     | job 6964539329 has state=finished
[2026-01-09 20:44:49] 2026-01-10 01:44:03,745 | INFO     | preparing for final server update for job 6964539329 in state='finished'
[2026-01-09 20:44:49] 2026-01-10 01:44:03,745 | INFO     | this job has now completed (state=finished)
[2026-01-09 20:44:49] 2026-01-10 01:44:03,745 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 20:44:49] 2026-01-10 01:44:03,745 | INFO     | log transfer has been attempted: DONE
[2026-01-09 20:44:49] 2026-01-10 01:44:03,746 | INFO     | job 6964539329 has finished - writing final server update
[2026-01-09 20:44:49] 2026-01-10 01:44:03,746 | INFO     | total number of processed events: 50 (read)
[2026-01-09 20:44:49] 2026-01-10 01:44:03,771 | INFO     | executing command: lscpu
[2026-01-09 20:44:49] 2026-01-10 01:44:04,046 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 20:44:49] 2026-01-10 01:44:04,320 | INFO     | time since job start (2682s) is within the limit (349056.0s)
[2026-01-09 20:44:49] 2026-01-10 01:44:06,005 | INFO     | monitor loop #198: job 0:6964539329 is in state 'finished'
[2026-01-09 20:44:49] 2026-01-10 01:44:06,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:44:49] 2026-01-10 01:44:06,326 | INFO     | time since job start (2684s) is within the limit (349056.0s)
[2026-01-09 20:44:49] 2026-01-10 01:44:08,335 | INFO     | time since job start (2686s) is within the limit (349056.0s)
[2026-01-09 20:44:49] 2026-01-10 01:44:08,510 | INFO     | monitor loop #199: job 0:6964539329 is in state 'finished'
[2026-01-09 20:44:49] 2026-01-10 01:44:08,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:44:49] 2026-01-10 01:44:10,342 | INFO     | time since job start (2688s) is within the limit (349056.0s)
[2026-01-09 20:44:49] 2026-01-10 01:44:11,015 | INFO     | monitor loop #200: job 0:6964539329 is in state 'finished'
[2026-01-09 20:44:49] 2026-01-10 01:44:11,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:44:49] 2026-01-10 01:44:12,347 | INFO     | time since job start (2690s) is within the limit (349056.0s)
[2026-01-09 20:44:49] 2026-01-10 01:44:13,518 | INFO     | monitor loop #201: job 0:6964539329 is in state 'finished'
[2026-01-09 20:44:49] 2026-01-10 01:44:13,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:44:49] 2026-01-10 01:44:13,753 | INFO     | PID=1132882 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:44:49] 2026-01-10 01:44:13,753 | INFO     | .. there are 15 such processes running
[2026-01-09 20:44:49] 2026-01-10 01:44:14,754 | INFO     | time since job start (2692s) is within the limit (349056.0s)
[2026-01-09 20:44:49] 2026-01-10 01:44:15,825 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 20:44:49] 2026-01-10 01:44:15,837 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3231.1674375
[2026-01-09 20:44:49] 2026-01-10 01:44:15,850 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6964539329/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:44:49] 2026-01-10 01:44:15,851 | INFO     | extracted standard info from prmon json
[2026-01-09 20:44:49] 2026-01-10 01:44:15,851 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:44:49] 2026-01-10 01:44:15,851 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:44:49] 2026-01-10 01:44:15,852 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:44:49] 2026-01-10 01:44:15,852 | INFO     | sum of square deviations: 14471428.972222218
[2026-01-09 20:44:49] 2026-01-10 01:44:15,852 | INFO     | sum of deviations: -111898230.47222233
[2026-01-09 20:44:49] 2026-01-10 01:44:15,852 | INFO     | mean x: 1768008200.5277777
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | mean y: 2500249.972222222
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | intersect: 13673367824.914732
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | chi2: 0.4501923688243131
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | current memory leak: -7.73 B/s (using 36 data points, chi2=0.45)
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | could have reported an average CPU frequency of 3259 MHz (5 samples)
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | ..............................
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | . Timing measurements:
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | . get job = 0 s
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | . initial setup = 3 s
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | . payload setup = 19 s
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | . stage-in = 0 s
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | . payload execution = 2617 s
[2026-01-09 20:44:49] 2026-01-10 01:44:15,853 | INFO     | . stage-out = 0 s
[2026-01-09 20:44:49] 2026-01-10 01:44:15,854 | INFO     | . log creation = 0 s
[2026-01-09 20:44:49] 2026-01-10 01:44:15,854 | INFO     | ..............................
[2026-01-09 20:44:49] 2026-01-10 01:44:16,267 | INFO     | 
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | job summary report
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | --------------------------------------------------
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | PanDA job id: 6964539329
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | task id: 47962010
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | errors: (none)
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | pilot state: finished 
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | transexitcode: 0
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | exeerrorcode: 0
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | exeerrordiag: 
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | exitcode: 0
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | exitmsg: OK
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | cpuconsumptiontime: 11420 s
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | nevents: 50
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | neventsw: 0
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | pid: 1144776
[2026-01-09 20:44:49] 2026-01-10 01:44:16,268 | INFO     | pgrp: 1144776
[2026-01-09 20:44:49] 2026-01-10 01:44:16,269 | INFO     | corecount: 8
[2026-01-09 20:44:49] 2026-01-10 01:44:16,269 | INFO     | event service: False
[2026-01-09 20:44:49] 2026-01-10 01:44:16,269 | INFO     | sizes: {0: 2284569, 11: 2284569, 14: 2284859, 22: 2284887, 2641: 2310907, 2642: 2310906, 2644: 2320084, 2646: 2320140, 2660: 2320418}
[2026-01-09 20:44:49] 2026-01-10 01:44:16,269 | INFO     | --------------------------------------------------
[2026-01-09 20:44:49] 2026-01-10 01:44:16,269 | INFO     | 
[2026-01-09 20:44:49] 2026-01-10 01:44:16,269 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,458 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,459 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,459 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,459 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,459 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,459 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,459 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:44:49] 2026-01-10 01:44:16,459 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,459 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:44:49] 2026-01-10 01:44:16,459 | INFO     | job 6964539329 has completed (purged errors)
[2026-01-09 20:44:49] 2026-01-10 01:44:16,459 | INFO     | overall cleanup function is called
[2026-01-09 20:44:49] 2026-01-10 01:44:17,494 | INFO     | --- collectZombieJob: --- 10, [1144776]
[2026-01-09 20:44:49] 2026-01-10 01:44:17,495 | INFO     | zombie collector waiting for pid 1144776
[2026-01-09 20:44:49] 2026-01-10 01:44:17,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:44:49] 2026-01-10 01:44:17,495 | INFO     | collected zombie processes
[2026-01-09 20:44:49] 2026-01-10 01:44:17,495 | INFO     | will attempt to kill all subprocesses of pid=1144776
[2026-01-09 20:44:49] 2026-01-10 01:44:18,157 | INFO     | process IDs to be killed: [1144776] (in reverse order)
[2026-01-09 20:44:49] 2026-01-10 01:44:18,171 [wrapper] supervise_pilot (15 min periods counter: 4)
[2026-01-09 20:44:49] 2026-01-10 01:44:18,280 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:44:49] 2026-01-10 01:44:18,280 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:44:49] 2026-01-10 01:44:18,298 | INFO     | did not find any defunct processes belonging to 1144776
[2026-01-09 20:44:49] 2026-01-10 01:44:18,317 | INFO     | did not find any defunct processes belonging to 1144776
[2026-01-09 20:44:49] 2026-01-10 01:44:18,317 | INFO     | ready for new job
[2026-01-09 20:44:49] 2026-01-10 01:44:18,317 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:44:49] 2026-01-10 01:44:18,319 | INFO     | ***************************************
[2026-01-09 20:44:49] 2026-01-10 01:44:18,319 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:44:49] 2026-01-10 01:44:18,319 | INFO     | ***************************************
[2026-01-09 20:44:49] 2026-01-10 01:44:18,319 | INFO     | 
[2026-01-09 20:44:49] 2026-01-10 01:44:18,324 | INFO     | architecture information:
[2026-01-09 20:44:49] 2026-01-10 01:44:18,324 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:44:49] 2026-01-10 01:44:18,341 | INFO     | cat /etc/os-release:
[2026-01-09 20:44:49] NAME="CentOS Linux"
[2026-01-09 20:44:49] VERSION="7 (Core)"
[2026-01-09 20:44:49] ID="centos"
[2026-01-09 20:44:49] ID_LIKE="rhel fedora"
[2026-01-09 20:44:49] VERSION_ID="7"
[2026-01-09 20:44:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:44:49] ANSI_COLOR="0;31"
[2026-01-09 20:44:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:44:49] HOME_URL="https://www.centos.org/"
[2026-01-09 20:44:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:44:49] 
[2026-01-09 20:44:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:44:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:44:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:44:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:44:49] 
[2026-01-09 20:44:49] 2026-01-10 01:44:18,342 | INFO     | ***************************************
[2026-01-09 20:44:49] 2026-01-10 01:44:18,845 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 20:44:49] 2026-01-10 01:44:18,890 | INFO     | sufficient remaining disk space (74897686528 B)
[2026-01-09 20:44:49] 2026-01-10 01:44:18,890 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:44:49] 2026-01-10 01:44:18,890 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:44:49] 2026-01-10 01:44:18,890 | INFO     | update_server=False
[2026-01-09 20:44:49] 2026-01-10 01:44:18,890 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:44:49] 2026-01-10 01:44:18,890 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:44:49] 2026-01-10 01:44:19,154 | INFO     | all job control threads have been joined
[2026-01-09 20:44:49] 2026-01-10 01:44:19,495 | INFO     | all payload control threads have been joined
[2026-01-09 20:44:49] 2026-01-10 01:44:19,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:44:49] 2026-01-10 01:44:19,534 | INFO     | aborting loop
[2026-01-09 20:44:49] 2026-01-10 01:44:19,814 | INFO     | all data control threads have been joined
[2026-01-09 20:44:49] 2026-01-10 01:44:19,896 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,007 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,026 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,161 | INFO     | [job] control thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,279 | INFO     | [job] validate thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,501 | INFO     | [payload] control thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,540 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,590 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,716 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,820 | INFO     | [data] control thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,897 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:20,938 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:44:49] 2026-01-10 01:44:21,170 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:21,491 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:21,674 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:44:49] 2026-01-10 01:44:21,944 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:25,688 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:26,514 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:44:49] 2026-01-10 01:44:29,696 | INFO     | job.realtimelogging is not enabled
[2026-01-09 20:44:49] 2026-01-10 01:44:30,701 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:44:49] 2026-01-10 01:44:31,736 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140252601939776)>', '<ExcThread(monitor, started 140251888613120)>']
[2026-01-09 20:44:49] 2026-01-10 01:44:36,761 | INFO     | all workflow threads have been joined
[2026-01-09 20:44:49] 2026-01-10 01:44:36,761 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:44:49] 2026-01-10 01:44:36,761 | INFO     | traces error code: 0
[2026-01-09 20:44:49] 2026-01-10 01:44:36,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:44:49] 2026-01-10 01:44:48,390 | INFO     | PID=1132882 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:44:49] 2026-01-10 01:44:48,390 | INFO     | .. there are 15 such processes running
[2026-01-09 20:44:49] 2026-01-10 01:44:48,391 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:44:49] 2026-01-10 01:44:48,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:44:49] 2026-01-10 01:44:48,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:44:49] 2026-01-10 01:44:48,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:44:49] 2026-01-10 01:44:48,391 | INFO     | [monitor] control thread has ended
[2026-01-09 20:44:49] 2026-01-10 01:44:48,491 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:44:49] 2026-01-10 01:44:48,526 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:44:49] 2026-01-10 01:44:48,535 [wrapper] pilotpid: 1132882
[2026-01-09 20:44:49] 2026-01-10 01:44:48,537 [wrapper] Pilot exit status: 0
[2026-01-09 20:44:49] 2026-01-10 01:44:48,558 [wrapper] pandaids: 6964539329
[2026-01-09 20:44:49] 2026-01-10 01:44:49,092 [wrapper] cleanup supervisor_pilot 1235574 1132883
[2026-01-09 20:44:49] 2026-01-10 01:44:49,103 [wrapper] Test setup, not cleaning
[2026-01-09 20:44:49] 2026-01-10 01:44:49,106 [wrapper] apfmon messages muted
[2026-01-09 20:44:49] 2026-01-10 01:44:49,113 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:44:49] 2026-01-10 01:44:49,143 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:44:49]  *** Error codes and diagnostics ***
[2026-01-09 20:44:49]     "exeErrorCode": 0,
[2026-01-09 20:44:49]     "exeErrorDiag": "",
[2026-01-09 20:44:49]     "pilotErrorCode": 0,
[2026-01-09 20:44:49]     "pilotErrorDiag": "",
[2026-01-09 20:44:49]  *** Listing of results directory ***
[2026-01-09 20:44:49] total 433204
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 10:55 pilot3.tar.gz
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 10:59 queuedata.json
[2026-01-09 20:44:49] -rwx------. 1 boincer umatlas     36322 Jan  9 11:00 runpilot2-wrapper.sh
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas       100 Jan  9 19:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:44:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 19:58 run_atlas
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas       105 Jan  9 19:58 job.xml
[2026-01-09 20:44:49] -rw-r--r--. 2 boincer umatlas 392998403 Jan  9 19:58 EVNT.47962006._000042.pool.root.1
[2026-01-09 20:44:49] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:58 start_atlas.sh
[2026-01-09 20:44:49] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 19:58 shared
[2026-01-09 20:44:49] -rw-r--r--. 2 boincer umatlas    592615 Jan  9 19:58 input.tar.gz
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas         0 Jan  9 19:58 boinc_lockfile
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas      2890 Jan  9 19:58 pandaJob.out
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas        57 Jan  9 19:58 setup.sh.local
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas    989374 Jan  9 19:59 agis_schedconf.cvmfs.json
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas   1516240 Jan  9 19:59 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:44:49] drwx------. 5 boincer umatlas      4096 Jan  9 19:59 pilot3
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas       529 Jan  9 20:36 boinc_task_state.xml
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas      6943 Jan  9 20:36 init_data.xml
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas  43528597 Jan  9 20:43 HITS.47962010._001893.pool.root.1
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas      1038 Jan  9 20:43 memory_monitor_summary.json
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas   1156922 Jan  9 20:43 log.47962010._001893.job.log.tgz.1
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas        95 Jan  9 20:44 pilot_heartbeat.json
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas      8536 Jan  9 20:44 heartbeat.json
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas       823 Jan  9 20:44 pilotlog.txt
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:44 boinc_mmap_file
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas    418238 Jan  9 20:44 log.47962010._001893.job.log.1
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas       353 Jan  9 20:44 output.list
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas        27 Jan  9 20:44 wrapper_checkpoint.txt
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:44 runtime_log
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas   1597440 Jan  9 20:44 result.tar.gz
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas       652 Jan  9 20:44 YbsMDmI5Ty8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhfmKDm66emLn.diag
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas      9337 Jan  9 20:44 runtime_log.err
[2026-01-09 20:44:49] -rw-r--r--. 1 boincer umatlas     22553 Jan  9 20:44 stderr.txt
[2026-01-09 20:44:49] HITS file was successfully produced:
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas 43528597 Jan  9 20:43 shared/HITS.pool.root.1
[2026-01-09 20:44:49]  *** Contents of shared directory: ***
[2026-01-09 20:44:49] total 428464
[2026-01-09 20:44:49] -rw-r--r--. 2 boincer umatlas 392998403 Jan  9 19:58 ATLAS.root_0
[2026-01-09 20:44:49] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:58 start_atlas.sh
[2026-01-09 20:44:49] -rw-r--r--. 2 boincer umatlas    592615 Jan  9 19:58 input.tar.gz
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas  43528597 Jan  9 20:43 HITS.pool.root.1
[2026-01-09 20:44:49] -rw-------. 1 boincer umatlas   1597440 Jan  9 20:44 result.tar.gz
20:44:51 (1129079): run_atlas exited; CPU time 11432.076259
20:44:51 (1129079): called boinc_finish(0)

</stderr_txt>
]]>

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