Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:13:25 (1381408): wrapper (7.7.26015): starting
19:13:25 (1381408): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 19:13:25] Arguments: --nthreads 9
[2026-01-09 19:13:25] Threads: 9
[2026-01-09 19:13:25] Checking for CVMFS
[2026-01-09 19:13:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:13:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:13:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:13:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:13:26] 2.13.3.0 13172 94116 378476 154961 1 465 32249231 32935937 22815 16776704 0 367794583 99.448 513132038 34553 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 19:13:26] CVMFS is ok
[2026-01-09 19:13:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:13:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:13:26] Further information can be found at the LHC@home message board.
[2026-01-09 19:13:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:13:26] Checking for apptainer binary...
[2026-01-09 19:13:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:13:26] Running /usr/bin/apptainer --version
[2026-01-09 19:13:26] apptainer version 1.4.5-2.el9
[2026-01-09 19:13:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:13:26] c6-6-8-3.aglt2.org
[2026-01-09 19:13:26] apptainer works
[2026-01-09 19:13:26] Set ATHENA_PROC_NUMBER=9
[2026-01-09 19:13:26] Set ATHENA_CORE_NUMBER=9
[2026-01-09 19:13:26] Starting ATLAS job with PandaID=6964539405
[2026-01-09 19:13:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:59:56]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:59:56] 2026-01-10 00:58:59,699 | INFO     | stage-out finished correctly
[2026-01-09 19:59:56] 2026-01-10 00:59:01,109 | INFO     | time since job start (2717s) is within the limit (349056.0s)
[2026-01-09 19:59:56] 2026-01-10 00:59:01,264 | WARNING  | process 1392590 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 19:59:56] 2026-01-10 00:59:01,264 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6964539405/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:59:56] 2026-01-10 00:59:01,265 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6964539405/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:59:56] 2026-01-10 00:59:01,265 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-09 19:59:56] 2026-01-10 00:59:01,265 | WARNING  | maxPSS not found in memory monitor output
[2026-01-09 19:59:56] 2026-01-10 00:59:01,266 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 164785 B
[2026-01-09 19:59:56] 2026-01-10 00:59:01,266 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3459605 B
[2026-01-09 19:59:56] 2026-01-10 00:59:01,266 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13338 B
[2026-01-09 19:59:56] 2026-01-10 00:59:01,266 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 19:59:56] 2026-01-10 00:59:01,284 | INFO     | sufficient remaining disk space (94148493312 B)
[2026-01-09 19:59:56] 2026-01-10 00:59:01,284 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 19:59:56] 2026-01-10 00:59:01,287 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6964539405: 7288057 B (within 4404019200 B limit)
[2026-01-09 19:59:56] 2026-01-10 00:59:01,288 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6964539405/HITS.47962010._001969.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 19:59:56] 2026-01-10 00:59:01,288 | INFO     | total size of present files: 0 B (workdir size: 7288057 B)
[2026-01-09 19:59:56] 2026-01-10 00:59:01,288 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6964539405/HITS.47962010._001969.pool.root.1 since it does not exist
[2026-01-09 19:59:56] 2026-01-10 00:59:01,726 | INFO     | number of running child processes to parent process 1392590: 1
[2026-01-09 19:59:56] 2026-01-10 00:59:01,726 | INFO     | maximum number of monitored processes: 14
[2026-01-09 19:59:56] 2026-01-10 00:59:02,172 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 19:59:56] 2026-01-10 00:59:03,127 | INFO     | time since job start (2719s) is within the limit (349056.0s)
[2026-01-09 19:59:56] 2026-01-10 00:59:03,145 | INFO     | job 6964539405 has state=finished
[2026-01-09 19:59:56] 2026-01-10 00:59:03,146 | INFO     | preparing for final server update for job 6964539405 in state='finished'
[2026-01-09 19:59:56] 2026-01-10 00:59:03,146 | INFO     | this job has now completed (state=finished)
[2026-01-09 19:59:56] 2026-01-10 00:59:03,146 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 19:59:56] 2026-01-10 00:59:03,146 | INFO     | log transfer has been attempted: DONE
[2026-01-09 19:59:56] 2026-01-10 00:59:03,146 | INFO     | job 6964539405 has finished - writing final server update
[2026-01-09 19:59:56] 2026-01-10 00:59:03,147 | INFO     | total number of processed events: 50 (read)
[2026-01-09 19:59:56] 2026-01-10 00:59:03,151 | INFO     | executing command: lscpu
[2026-01-09 19:59:56] 2026-01-10 00:59:03,212 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 19:59:56] 2026-01-10 00:59:04,231 | INFO     | monitor loop #189: job 0:6964539405 is in state 'finished'
[2026-01-09 19:59:56] 2026-01-10 00:59:04,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:59:56] 2026-01-10 00:59:05,133 | INFO     | time since job start (2721s) is within the limit (349056.0s)
[2026-01-09 19:59:56] 2026-01-10 00:59:06,736 | INFO     | monitor loop #190: job 0:6964539405 is in state 'finished'
[2026-01-09 19:59:56] 2026-01-10 00:59:06,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:59:56] 2026-01-10 00:59:07,151 | INFO     | time since job start (2723s) is within the limit (349056.0s)
[2026-01-09 19:59:56] 2026-01-10 00:59:08,675 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 19:59:56] 2026-01-10 00:59:08,690 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2673.904979166667
[2026-01-09 19:59:56] 2026-01-10 00:59:08,708 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6964539405/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:59:56] 2026-01-10 00:59:08,709 | INFO     | extracted standard info from prmon json
[2026-01-09 19:59:56] 2026-01-10 00:59:08,709 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 19:59:56] 2026-01-10 00:59:08,709 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 19:59:56] 2026-01-10 00:59:08,711 | INFO     | fitting pss+swap vs Time
[2026-01-09 19:59:56] 2026-01-10 00:59:08,711 | INFO     | sum of square deviations: 15663265.67567568
[2026-01-09 19:59:56] 2026-01-10 00:59:08,711 | INFO     | sum of deviations: -1322227508.2702706
[2026-01-09 19:59:56] 2026-01-10 00:59:08,711 | INFO     | mean x: 1768005474.1891892
[2026-01-09 19:59:56] 2026-01-10 00:59:08,711 | INFO     | mean y: 2793270.3243243243
[2026-01-09 19:59:56] 2026-01-10 00:59:08,711 | INFO     | intersect: 149250435565.99942
[2026-01-09 19:59:56] 2026-01-10 00:59:08,711 | INFO     | chi2: 0.33482935212207926
[2026-01-09 19:59:56] 2026-01-10 00:59:08,712 | INFO     | current memory leak: -84.42 B/s (using 37 data points, chi2=0.33)
[2026-01-09 19:59:56] 2026-01-10 00:59:08,712 | INFO     | could have reported an average CPU frequency of 2681 MHz (5 samples)
[2026-01-09 19:59:56] 2026-01-10 00:59:08,712 | INFO     | ..............................
[2026-01-09 19:59:56] 2026-01-10 00:59:08,712 | INFO     | . Timing measurements:
[2026-01-09 19:59:56] 2026-01-10 00:59:08,712 | INFO     | . get job = 0 s
[2026-01-09 19:59:56] 2026-01-10 00:59:08,712 | INFO     | . initial setup = 3 s
[2026-01-09 19:59:56] 2026-01-10 00:59:08,712 | INFO     | . payload setup = 12 s
[2026-01-09 19:59:56] 2026-01-10 00:59:08,712 | INFO     | . stage-in = 0 s
[2026-01-09 19:59:56] 2026-01-10 00:59:08,712 | INFO     | . payload execution = 2676 s
[2026-01-09 19:59:56] 2026-01-10 00:59:08,712 | INFO     | . stage-out = 0 s
[2026-01-09 19:59:56] 2026-01-10 00:59:08,713 | INFO     | . log creation = 0 s
[2026-01-09 19:59:56] 2026-01-10 00:59:08,713 | INFO     | ..............................
[2026-01-09 19:59:56] 2026-01-10 00:59:09,139 | INFO     | 
[2026-01-09 19:59:56] 2026-01-10 00:59:09,139 | INFO     | job summary report
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | --------------------------------------------------
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | PanDA job id: 6964539405
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | task id: 47962010
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | errors: (none)
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | pilot state: finished 
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | transexitcode: 0
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | exeerrorcode: 0
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | exeerrordiag: 
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | exitcode: 0
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | exitmsg: OK
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | cpuconsumptiontime: 15721 s
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | nevents: 50
[2026-01-09 19:59:56] 2026-01-10 00:59:09,140 | INFO     | neventsw: 0
[2026-01-09 19:59:56] 2026-01-10 00:59:09,141 | INFO     | pid: 1392590
[2026-01-09 19:59:56] 2026-01-10 00:59:09,141 | INFO     | pgrp: 1392590
[2026-01-09 19:59:56] 2026-01-10 00:59:09,141 | INFO     | corecount: 9
[2026-01-09 19:59:56] 2026-01-10 00:59:09,141 | INFO     | event service: False
[2026-01-09 19:59:56] 2026-01-10 00:59:09,141 | INFO     | sizes: {0: 2284569, 1: 2284569, 11: 2284859, 12: 2284887, 2692: 2310895, 2693: 2319889, 2695: 2320101, 2702: 2320379}
[2026-01-09 19:59:56] 2026-01-10 00:59:09,141 | INFO     | --------------------------------------------------
[2026-01-09 19:59:56] 2026-01-10 00:59:09,141 | INFO     | 
[2026-01-09 19:59:56] 2026-01-10 00:59:09,141 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 19:59:56] 2026-01-10 00:59:09,166 | INFO     | time since job start (2725s) is within the limit (349056.0s)
[2026-01-09 19:59:56] 2026-01-10 00:59:09,175 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,175 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,175 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,175 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,175 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,176 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:59:56] 2026-01-10 00:59:09,177 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,177 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:59:56] 2026-01-10 00:59:09,177 | INFO     | job 6964539405 has completed (purged errors)
[2026-01-09 19:59:56] 2026-01-10 00:59:09,177 | INFO     | overall cleanup function is called
[2026-01-09 19:59:56] 2026-01-10 00:59:10,191 | INFO     | --- collectZombieJob: --- 10, [1392590]
[2026-01-09 19:59:56] 2026-01-10 00:59:10,191 | INFO     | zombie collector waiting for pid 1392590
[2026-01-09 19:59:56] 2026-01-10 00:59:10,192 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:59:56] 2026-01-10 00:59:10,192 | INFO     | collected zombie processes
[2026-01-09 19:59:56] 2026-01-10 00:59:10,192 | INFO     | will attempt to kill all subprocesses of pid=1392590
[2026-01-09 19:59:56] 2026-01-10 00:59:10,624 | INFO     | process IDs to be killed: [1392590] (in reverse order)
[2026-01-09 19:59:56] 2026-01-10 00:59:10,751 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:59:56] 2026-01-10 00:59:10,751 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:59:56] 2026-01-10 00:59:10,767 | INFO     | did not find any defunct processes belonging to 1392590
[2026-01-09 19:59:56] 2026-01-10 00:59:10,783 | INFO     | did not find any defunct processes belonging to 1392590
[2026-01-09 19:59:56] 2026-01-10 00:59:10,784 | INFO     | ready for new job
[2026-01-09 19:59:56] 2026-01-10 00:59:10,784 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:59:56] 2026-01-10 00:59:10,785 | INFO     | ***************************************
[2026-01-09 19:59:56] 2026-01-10 00:59:10,785 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:59:56] 2026-01-10 00:59:10,785 | INFO     | ***************************************
[2026-01-09 19:59:56] 2026-01-10 00:59:10,785 | INFO     | 
[2026-01-09 19:59:56] 2026-01-10 00:59:10,794 | INFO     | architecture information:
[2026-01-09 19:59:56] 2026-01-10 00:59:10,794 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:59:56] 2026-01-10 00:59:10,821 | INFO     | cat /etc/os-release:
[2026-01-09 19:59:56] NAME="CentOS Linux"
[2026-01-09 19:59:56] VERSION="7 (Core)"
[2026-01-09 19:59:56] ID="centos"
[2026-01-09 19:59:56] ID_LIKE="rhel fedora"
[2026-01-09 19:59:56] VERSION_ID="7"
[2026-01-09 19:59:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:59:56] ANSI_COLOR="0;31"
[2026-01-09 19:59:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:59:56] HOME_URL="https://www.centos.org/"
[2026-01-09 19:59:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:59:56] 
[2026-01-09 19:59:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:59:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:59:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:59:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:59:56] 
[2026-01-09 19:59:56] 2026-01-10 00:59:10,821 | INFO     | ***************************************
[2026-01-09 19:59:56] 2026-01-10 00:59:11,326 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 19:59:56] 2026-01-10 00:59:11,348 | INFO     | sufficient remaining disk space (94155833344 B)
[2026-01-09 19:59:56] 2026-01-10 00:59:11,348 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:59:56] 2026-01-10 00:59:11,348 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:59:56] 2026-01-10 00:59:11,348 | INFO     | update_server=False
[2026-01-09 19:59:56] 2026-01-10 00:59:11,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:59:56] 2026-01-10 00:59:11,436 | INFO     | all data control threads have been joined
[2026-01-09 19:59:56] 2026-01-10 00:59:11,520 | INFO     | all payload control threads have been joined
[2026-01-09 19:59:56] 2026-01-10 00:59:11,757 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 19:59:56] 2026-01-10 00:59:11,757 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 19:59:56] 2026-01-10 00:59:11,758 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:59:56] 2026-01-10 00:59:11,758 | INFO     | will abort loop
[2026-01-09 19:59:56] 2026-01-10 00:59:12,354 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:12,383 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:12,442 | INFO     | [data] control thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:12,514 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:12,528 | INFO     | [payload] control thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:12,617 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:12,763 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:12,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:59:56] 2026-01-10 00:59:12,841 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:59:56] 2026-01-10 00:59:12,932 | INFO     | all job control threads have been joined
[2026-01-09 19:59:56] 2026-01-10 00:59:12,979 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:13,171 | INFO     | [job] validate thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:13,201 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:13,251 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:13,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:59:56] 2026-01-10 00:59:13,937 | INFO     | [job] control thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:14,848 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:14,868 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:16,796 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:22,289 | INFO     | job.realtimelogging is not enabled
[2026-01-09 19:59:56] 2026-01-10 00:59:23,294 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:59:56] 2026-01-10 00:59:42,744 | INFO     | PID=1385993 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 19:59:56] 2026-01-10 00:59:42,745 | INFO     | .. there are 24 such processes running
[2026-01-09 19:59:56] 2026-01-10 00:59:42,745 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:59:56] 2026-01-10 00:59:42,745 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:59:56] 2026-01-10 00:59:42,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:59:56] 2026-01-10 00:59:48,882 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:59:56] 2026-01-10 00:59:50,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140709745354560)>', '<ExcThread(monitor, started 140708858013440)>']
[2026-01-09 19:59:56] 2026-01-10 00:59:51,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:59:56] 2026-01-10 00:59:51,799 | INFO     | [monitor] control thread has ended
[2026-01-09 19:59:56] 2026-01-10 00:59:55,846 | INFO     | all workflow threads have been joined
[2026-01-09 19:59:56] 2026-01-10 00:59:55,847 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:59:56] 2026-01-10 00:59:55,847 | INFO     | traces error code: 0
[2026-01-09 19:59:56] 2026-01-10 00:59:55,847 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:59:56] 2026-01-10 00:59:56,009 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:59:56] 2026-01-10 00:59:56,011 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:59:56] 2026-01-10 00:59:56,014 [wrapper] pilotpid: 1385993
[2026-01-09 19:59:56] 2026-01-10 00:59:56,015 [wrapper] Pilot exit status: 0
[2026-01-09 19:59:56] 2026-01-10 00:59:56,042 [wrapper] pandaids: 6964539405
[2026-01-09 19:59:56] 2026-01-10 00:59:56,122 [wrapper] cleanup supervisor_pilot 1511648 1385994
[2026-01-09 19:59:56] 2026-01-10 00:59:56,125 [wrapper] Test setup, not cleaning
[2026-01-09 19:59:56] 2026-01-10 00:59:56,127 [wrapper] apfmon messages muted
[2026-01-09 19:59:56] 2026-01-10 00:59:56,133 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:59:56] 2026-01-10 00:59:56,142 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:59:56]  *** Error codes and diagnostics ***
[2026-01-09 19:59:56]     "exeErrorCode": 0,
[2026-01-09 19:59:56]     "exeErrorDiag": "",
[2026-01-09 19:59:56]     "pilotErrorCode": 0,
[2026-01-09 19:59:56]     "pilotErrorDiag": "",
[2026-01-09 19:59:56]  *** Listing of results directory ***
[2026-01-09 19:59:56] total 433508
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 10:55 pilot3.tar.gz
[2026-01-09 19:59:56] -rwx------. 1 boincer umatlas     36322 Jan  9 11:00 runpilot2-wrapper.sh
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 11:00 queuedata.json
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas       100 Jan  9 19:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:59:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 19:13 run_atlas
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas       105 Jan  9 19:13 job.xml
[2026-01-09 19:59:56] -rw-r--r--. 2 boincer umatlas 391230903 Jan  9 19:13 EVNT.47962006._000048.pool.root.1
[2026-01-09 19:59:56] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:13 start_atlas.sh
[2026-01-09 19:59:56] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 19:13 shared
[2026-01-09 19:59:56] -rw-r--r--. 2 boincer umatlas    592611 Jan  9 19:13 input.tar.gz
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas         0 Jan  9 19:13 boinc_lockfile
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas      2890 Jan  9 19:13 pandaJob.out
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas        57 Jan  9 19:13 setup.sh.local
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas    989374 Jan  9 19:13 agis_schedconf.cvmfs.json
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas   1516240 Jan  9 19:13 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:59:56] drwx------. 5 boincer umatlas      4096 Jan  9 19:13 pilot3
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas       530 Jan  9 19:50 boinc_task_state.xml
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas      6875 Jan  9 19:57 init_data.xml
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas  45348550 Jan  9 19:58 HITS.47962010._001969.pool.root.1
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas      1042 Jan  9 19:58 memory_monitor_summary.json
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas   1282271 Jan  9 19:58 log.47962010._001969.job.log.tgz.1
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas      8580 Jan  9 19:59 heartbeat.json
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas        95 Jan  9 19:59 pilot_heartbeat.json
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 19:59 boinc_mmap_file
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas        27 Jan  9 19:59 wrapper_checkpoint.txt
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas      5082 Jan  9 19:59 pilotlog.txt
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas    422724 Jan  9 19:59 log.47962010._001969.job.log.1
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas       353 Jan  9 19:59 output.list
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas       620 Jan  9 19:59 runtime_log
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas   1720320 Jan  9 19:59 result.tar.gz
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas      9342 Jan  9 19:59 runtime_log.err
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas       652 Jan  9 19:59 2U7LDmS5Ty8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxThKDmrvFelm.diag
[2026-01-09 19:59:56] -rw-r--r--. 1 boincer umatlas     22536 Jan  9 19:59 stderr.txt
[2026-01-09 19:59:56] HITS file was successfully produced:
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas 45348550 Jan  9 19:58 shared/HITS.pool.root.1
[2026-01-09 19:59:56]  *** Contents of shared directory: ***
[2026-01-09 19:59:56] total 428636
[2026-01-09 19:59:56] -rw-r--r--. 2 boincer umatlas 391230903 Jan  9 19:13 ATLAS.root_0
[2026-01-09 19:59:56] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:13 start_atlas.sh
[2026-01-09 19:59:56] -rw-r--r--. 2 boincer umatlas    592611 Jan  9 19:13 input.tar.gz
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas  45348550 Jan  9 19:58 HITS.pool.root.1
[2026-01-09 19:59:56] -rw-------. 1 boincer umatlas   1720320 Jan  9 19:59 result.tar.gz
19:59:57 (1381408): run_atlas exited; CPU time 15784.523011
19:59:57 (1381408): called boinc_finish(0)

</stderr_txt>
]]>

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