Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:37:29 (9359): wrapper (7.7.26015): starting
18:37:29 (9359): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 18:37:29] Arguments: --nthreads 8
[2026-01-09 18:37:29] Threads: 8
[2026-01-09 18:37:29] Checking for CVMFS
[2026-01-09 18:37:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:37:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:37:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:37:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:37:29] 2.11.2.0 2857 131665 113700 154961 2 58 14712465 20275201 1 130560 0 33474989 99.826 8310145 30420 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 18:37:29] CVMFS is ok
[2026-01-09 18:37:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:37:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:37:29] Further information can be found at the LHC@home message board.
[2026-01-09 18:37:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:37:29] Checking for apptainer binary...
[2026-01-09 18:37:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:37:29] Running /usr/bin/apptainer --version
[2026-01-09 18:37:29] apptainer version 1.3.2-1.el7
[2026-01-09 18:37:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:37:31] c-204-10.aglt2.org
[2026-01-09 18:37:31] apptainer works
[2026-01-09 18:37:31] Set ATHENA_PROC_NUMBER=8
[2026-01-09 18:37:31] Set ATHENA_CORE_NUMBER=8
[2026-01-09 18:37:31] Starting ATLAS job with PandaID=6964539325
[2026-01-09 18:37:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:38:00]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:38:00] 2026-01-10 00:36:49,223 | WARNING  | process 19647 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 19:38:00] 2026-01-10 00:36:49,224 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6964539325/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:38:00] 2026-01-10 00:36:49,224 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6964539325/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:38:00] 2026-01-10 00:36:49,225 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-09 19:38:00] 2026-01-10 00:36:49,225 | WARNING  | maxPSS not found in memory monitor output
[2026-01-09 19:38:00] 2026-01-10 00:36:49,226 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3203773 B
[2026-01-09 19:38:00] 2026-01-10 00:36:49,226 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 161956 B
[2026-01-09 19:38:00] 2026-01-10 00:36:49,226 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13297 B
[2026-01-09 19:38:00] 2026-01-10 00:36:49,226 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 19:38:00] 2026-01-10 00:36:49,246 | INFO     | sufficient remaining disk space (18365808640 B)
[2026-01-09 19:38:00] 2026-01-10 00:36:49,247 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 19:38:00] 2026-01-10 00:36:49,252 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6964539325: 6696846 B (within 4404019200 B limit)
[2026-01-09 19:38:00] 2026-01-10 00:36:49,252 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6964539325/HITS.47962010._001889.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 19:38:00] 2026-01-10 00:36:49,253 | INFO     | total size of present files: 0 B (workdir size: 6696846 B)
[2026-01-09 19:38:00] 2026-01-10 00:36:49,253 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6964539325/HITS.47962010._001889.pool.root.1 since it does not exist
[2026-01-09 19:38:00] 2026-01-10 00:36:49,341 | INFO     | number of running child processes to parent process 19647: 1
[2026-01-09 19:38:00] 2026-01-10 00:36:49,342 | INFO     | maximum number of monitored processes: 16
[2026-01-09 19:38:00] 2026-01-10 00:36:50,295 | INFO     | time since job start (3541s) is within the limit (349056.0s)
[2026-01-09 19:38:00] 2026-01-10 00:36:50,657 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 19:38:00] 2026-01-10 00:36:51,845 | INFO     | monitor loop #268: job 0:6964539325 is in state 'finished'
[2026-01-09 19:38:00] 2026-01-10 00:36:51,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:38:00] 2026-01-10 00:36:52,301 | INFO     | time since job start (3543s) is within the limit (349056.0s)
[2026-01-09 19:38:00] 2026-01-10 00:36:52,634 | INFO     | job 6964539325 has state=finished
[2026-01-09 19:38:00] 2026-01-10 00:36:52,634 | INFO     | preparing for final server update for job 6964539325 in state='finished'
[2026-01-09 19:38:00] 2026-01-10 00:36:52,635 | INFO     | this job has now completed (state=finished)
[2026-01-09 19:38:00] 2026-01-10 00:36:52,635 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 19:38:00] 2026-01-10 00:36:52,635 | INFO     | log transfer has been attempted: DONE
[2026-01-09 19:38:00] 2026-01-10 00:36:52,635 | INFO     | job 6964539325 has finished - writing final server update
[2026-01-09 19:38:00] 2026-01-10 00:36:52,636 | INFO     | total number of processed events: 50 (read)
[2026-01-09 19:38:00] 2026-01-10 00:36:52,642 | INFO     | executing command: lscpu
[2026-01-09 19:38:00] 2026-01-10 00:36:52,672 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 19:38:00] 2026-01-10 00:36:53,428 | INFO     | PID=13110 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 19:38:00] 2026-01-10 00:36:54,349 | INFO     | monitor loop #269: job 0:6964539325 is in state 'finished'
[2026-01-09 19:38:00] 2026-01-10 00:36:54,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:38:00] 2026-01-10 00:36:54,429 | INFO     | time since job start (3545s) is within the limit (349056.0s)
[2026-01-09 19:38:00] 2026-01-10 00:36:56,436 | INFO     | time since job start (3547s) is within the limit (349056.0s)
[2026-01-09 19:38:00] 2026-01-10 00:36:56,852 | INFO     | monitor loop #270: job 0:6964539325 is in state 'finished'
[2026-01-09 19:38:00] 2026-01-10 00:36:56,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:38:00] 2026-01-10 00:36:58,442 | INFO     | time since job start (3549s) is within the limit (349056.0s)
[2026-01-09 19:38:00] 2026-01-10 00:36:58,494 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 19:38:00] 2026-01-10 00:36:58,499 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2026-01-09 19:38:00] 2026-01-10 00:36:58,501 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6964539325/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:38:00] 2026-01-10 00:36:58,502 | INFO     | extracted standard info from prmon json
[2026-01-09 19:38:00] 2026-01-10 00:36:58,502 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 19:38:00] 2026-01-10 00:36:58,502 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 19:38:00] 2026-01-10 00:36:58,505 | INFO     | fitting pss+swap vs Time
[2026-01-09 19:38:00] 2026-01-10 00:36:58,505 | INFO     | sum of square deviations: 41111938.627451025
[2026-01-09 19:38:00] 2026-01-10 00:36:58,506 | INFO     | sum of deviations: -3811679856.411765
[2026-01-09 19:38:00] 2026-01-10 00:36:58,506 | INFO     | mean x: 1768003731.4509804
[2026-01-09 19:38:00] 2026-01-10 00:36:58,506 | INFO     | mean y: 2577062.2352941176
[2026-01-09 19:38:00] 2026-01-10 00:36:58,506 | INFO     | intersect: 163922461023.4545
[2026-01-09 19:38:00] 2026-01-10 00:36:58,507 | INFO     | chi2: 0.4532696230765647
[2026-01-09 19:38:00] 2026-01-10 00:36:58,507 | INFO     | current memory leak: -92.71 B/s (using 51 data points, chi2=0.45)
[2026-01-09 19:38:00] 2026-01-10 00:36:58,507 | INFO     | could have reported an average CPU frequency of 1842 MHz (5 samples)
[2026-01-09 19:38:00] 2026-01-10 00:36:58,507 | INFO     | ..............................
[2026-01-09 19:38:00] 2026-01-10 00:36:58,508 | INFO     | . Timing measurements:
[2026-01-09 19:38:00] 2026-01-10 00:36:58,508 | INFO     | . get job = 0 s
[2026-01-09 19:38:00] 2026-01-10 00:36:58,508 | INFO     | . initial setup = 2 s
[2026-01-09 19:38:00] 2026-01-10 00:36:58,508 | INFO     | . payload setup = 9 s
[2026-01-09 19:38:00] 2026-01-10 00:36:58,508 | INFO     | . stage-in = 0 s
[2026-01-09 19:38:00] 2026-01-10 00:36:58,508 | INFO     | . payload execution = 3507 s
[2026-01-09 19:38:00] 2026-01-10 00:36:58,508 | INFO     | . stage-out = 0 s
[2026-01-09 19:38:00] 2026-01-10 00:36:58,509 | INFO     | . log creation = 0 s
[2026-01-09 19:38:00] 2026-01-10 00:36:58,509 | INFO     | ..............................
[2026-01-09 19:38:00] 2026-01-10 00:36:58,836 | INFO     | 
[2026-01-09 19:38:00] 2026-01-10 00:36:58,836 | INFO     | job summary report
[2026-01-09 19:38:00] 2026-01-10 00:36:58,836 | INFO     | --------------------------------------------------
[2026-01-09 19:38:00] 2026-01-10 00:36:58,837 | INFO     | PanDA job id: 6964539325
[2026-01-09 19:38:00] 2026-01-10 00:36:58,837 | INFO     | task id: 47962010
[2026-01-09 19:38:00] 2026-01-10 00:36:58,837 | INFO     | errors: (none)
[2026-01-09 19:38:00] 2026-01-10 00:36:58,837 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 19:38:00] 2026-01-10 00:36:58,837 | INFO     | pilot state: finished 
[2026-01-09 19:38:00] 2026-01-10 00:36:58,837 | INFO     | transexitcode: 0
[2026-01-09 19:38:00] 2026-01-10 00:36:58,838 | INFO     | exeerrorcode: 0
[2026-01-09 19:38:00] 2026-01-10 00:36:58,838 | INFO     | exeerrordiag: 
[2026-01-09 19:38:00] 2026-01-10 00:36:58,838 | INFO     | exitcode: 0
[2026-01-09 19:38:00] 2026-01-10 00:36:58,838 | INFO     | exitmsg: OK
[2026-01-09 19:38:00] 2026-01-10 00:36:58,838 | INFO     | cpuconsumptiontime: 23515 s
[2026-01-09 19:38:00] 2026-01-10 00:36:58,838 | INFO     | nevents: 50
[2026-01-09 19:38:00] 2026-01-10 00:36:58,839 | INFO     | neventsw: 0
[2026-01-09 19:38:00] 2026-01-10 00:36:58,839 | INFO     | pid: 19647
[2026-01-09 19:38:00] 2026-01-10 00:36:58,839 | INFO     | pgrp: 19647
[2026-01-09 19:38:00] 2026-01-10 00:36:58,839 | INFO     | corecount: 8
[2026-01-09 19:38:00] 2026-01-10 00:36:58,839 | INFO     | event service: False
[2026-01-09 19:38:00] 2026-01-10 00:36:58,839 | INFO     | sizes: {0: 2284398, 1: 2284597, 7: 2284859, 12: 2284887, 3520: 2311331, 3521: 2320325, 3525: 2320537, 3533: 2320815}
[2026-01-09 19:38:00] 2026-01-10 00:36:58,839 | INFO     | --------------------------------------------------
[2026-01-09 19:38:00] 2026-01-10 00:36:58,839 | INFO     | 
[2026-01-09 19:38:00] 2026-01-10 00:36:58,840 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 19:38:00] 2026-01-10 00:36:58,869 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,870 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,870 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,870 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,870 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,871 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,871 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,871 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,871 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,871 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,871 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,872 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,872 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,872 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,872 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,872 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,873 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:38:00] 2026-01-10 00:36:58,873 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,873 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:38:00] 2026-01-10 00:36:58,873 | INFO     | job 6964539325 has completed (purged errors)
[2026-01-09 19:38:00] 2026-01-10 00:36:58,874 | INFO     | overall cleanup function is called
[2026-01-09 19:38:00] 2026-01-10 00:36:59,888 | INFO     | --- collectZombieJob: --- 10, [19647]
[2026-01-09 19:38:00] 2026-01-10 00:36:59,888 | INFO     | zombie collector waiting for pid 19647
[2026-01-09 19:38:00] 2026-01-10 00:36:59,889 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:38:00] 2026-01-10 00:36:59,889 | INFO     | collected zombie processes
[2026-01-09 19:38:00] 2026-01-10 00:36:59,889 | INFO     | will attempt to kill all subprocesses of pid=19647
[2026-01-09 19:38:00] 2026-01-10 00:36:59,980 | INFO     | process IDs to be killed: [19647] (in reverse order)
[2026-01-09 19:38:00] 2026-01-10 00:37:00,039 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:38:00] 2026-01-10 00:37:00,039 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:38:00] 2026-01-10 00:37:00,043 | INFO     | did not find any defunct processes belonging to 19647
[2026-01-09 19:38:00] 2026-01-10 00:37:00,047 | INFO     | did not find any defunct processes belonging to 19647
[2026-01-09 19:38:00] 2026-01-10 00:37:00,047 | INFO     | ready for new job
[2026-01-09 19:38:00] 2026-01-10 00:37:00,048 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:38:00] 2026-01-10 00:37:00,050 | INFO     | ***************************************
[2026-01-09 19:38:00] 2026-01-10 00:37:00,050 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:38:00] 2026-01-10 00:37:00,050 | INFO     | ***************************************
[2026-01-09 19:38:00] 2026-01-10 00:37:00,050 | INFO     | 
[2026-01-09 19:38:00] 2026-01-10 00:37:00,051 | INFO     | architecture information:
[2026-01-09 19:38:00] 2026-01-10 00:37:00,052 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:38:00] 2026-01-10 00:37:00,076 | INFO     | cat /etc/os-release:
[2026-01-09 19:38:00] NAME="CentOS Linux"
[2026-01-09 19:38:00] VERSION="7 (Core)"
[2026-01-09 19:38:00] ID="centos"
[2026-01-09 19:38:00] ID_LIKE="rhel fedora"
[2026-01-09 19:38:00] VERSION_ID="7"
[2026-01-09 19:38:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:38:00] ANSI_COLOR="0;31"
[2026-01-09 19:38:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:38:00] HOME_URL="https://www.centos.org/"
[2026-01-09 19:38:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:38:00] 
[2026-01-09 19:38:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:38:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:38:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:38:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:38:00] 
[2026-01-09 19:38:00] 2026-01-10 00:37:00,076 | INFO     | ***************************************
[2026-01-09 19:38:00] 2026-01-10 00:37:00,579 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 19:38:00] 2026-01-10 00:37:00,599 | INFO     | sufficient remaining disk space (18373148672 B)
[2026-01-09 19:38:00] 2026-01-10 00:37:00,600 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:38:00] 2026-01-10 00:37:00,600 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:38:00] 2026-01-10 00:37:00,600 | INFO     | update_server=False
[2026-01-09 19:38:00] 2026-01-10 00:37:00,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:38:00] 2026-01-10 00:37:00,601 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:38:00] 2026-01-10 00:37:00,601 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:38:00] 2026-01-10 00:37:00,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:38:00] 2026-01-10 00:37:00,602 | INFO     | aborting loop
[2026-01-09 19:38:00] 2026-01-10 00:37:01,257 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:38:00] 2026-01-10 00:37:01,562 | INFO     | all data control threads have been joined
[2026-01-09 19:38:00] 2026-01-10 00:37:01,605 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:01,607 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:01,608 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:01,633 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:01,647 | INFO     | all payload control threads have been joined
[2026-01-09 19:38:00] 2026-01-10 00:37:02,106 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:02,113 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:02,120 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:02,125 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:02,251 | INFO     | all job control threads have been joined
[2026-01-09 19:38:00] 2026-01-10 00:37:02,563 | INFO     | [data] control thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:02,608 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:02,653 | INFO     | [payload] control thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:02,682 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:03,103 | INFO     | [job] validate thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:03,257 | INFO     | [job] control thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:05,263 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:10,704 | INFO     | job.realtimelogging is not enabled
[2026-01-09 19:38:00] 2026-01-10 00:37:11,710 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:38:00] 2026-01-10 00:37:31,561 | INFO     | PID=13110 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 19:38:00] 2026-01-10 00:37:31,561 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:38:00] 2026-01-10 00:37:31,561 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:38:00] 2026-01-10 00:37:31,561 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:38:00] 2026-01-10 00:37:45,384 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-01-09 19:38:00] 2026-01-10 00:37:54,164 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:38:00] 2026-01-10 00:37:55,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140446763702080)>', '<ExcThread(monitor, started 140445849982720)>']
[2026-01-09 19:38:00] 2026-01-10 00:37:55,681 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:38:00] 2026-01-10 00:37:55,681 | INFO     | [monitor] control thread has ended
[2026-01-09 19:38:00] 2026-01-10 00:38:00,132 | INFO     | all workflow threads have been joined
[2026-01-09 19:38:00] 2026-01-10 00:38:00,133 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:38:00] 2026-01-10 00:38:00,133 | INFO     | traces error code: 0
[2026-01-09 19:38:00] 2026-01-10 00:38:00,134 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:38:00] 2026-01-10 00:38:00,258 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:38:00] 2026-01-10 00:38:00,263 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:38:00] 2026-01-10 00:38:00,268 [wrapper] pilotpid: 13110
[2026-01-09 19:38:00] 2026-01-10 00:38:00,273 [wrapper] Pilot exit status: 0
[2026-01-09 19:38:00] 2026-01-10 00:38:00,292 [wrapper] pandaids: 6964539325
[2026-01-09 19:38:00] 2026-01-10 00:38:00,349 [wrapper] cleanup supervisor_pilot 19278 13111
[2026-01-09 19:38:00] 2026-01-10 00:38:00,355 [wrapper] Test setup, not cleaning
[2026-01-09 19:38:00] 2026-01-10 00:38:00,360 [wrapper] apfmon messages muted
[2026-01-09 19:38:00] 2026-01-10 00:38:00,366 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:38:00] 2026-01-10 00:38:00,371 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:38:00]  *** Error codes and diagnostics ***
[2026-01-09 19:38:00]     "exeErrorCode": 0,
[2026-01-09 19:38:00]     "exeErrorDiag": "",
[2026-01-09 19:38:00]     "pilotErrorCode": 0,
[2026-01-09 19:38:00]     "pilotErrorDiag": "",
[2026-01-09 19:38:00]  *** Listing of results directory ***
[2026-01-09 19:38:00] total 435640
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas    579449 Jan  9 10:55 pilot3.tar.gz
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas      5112 Jan  9 10:59 queuedata.json
[2026-01-09 19:38:00] -rwx------ 1 boincer umatlas     36322 Jan  9 11:00 runpilot2-wrapper.sh
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas       100 Jan  9 18:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:38:00] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 18:37 run_atlas
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas       105 Jan  9 18:37 job.xml
[2026-01-09 19:38:00] -rw-r--r-- 2 boincer umatlas 392998403 Jan  9 18:37 EVNT.47962006._000042.pool.root.1
[2026-01-09 19:38:00] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 18:37 start_atlas.sh
[2026-01-09 19:38:00] drwxrwx--x 2 boincer umatlas      4096 Jan  9 18:37 shared
[2026-01-09 19:38:00] -rw-r--r-- 2 boincer umatlas    592617 Jan  9 18:37 input.tar.gz
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas         0 Jan  9 18:37 boinc_lockfile
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas      2890 Jan  9 18:37 pandaJob.out
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas        57 Jan  9 18:37 setup.sh.local
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas    989374 Jan  9 18:37 agis_schedconf.cvmfs.json
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas   1516240 Jan  9 18:37 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:38:00] drwx------ 5 boincer umatlas      4096 Jan  9 18:37 pilot3
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas       529 Jan  9 19:29 boinc_task_state.xml
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas      5908 Jan  9 19:36 init_data.xml
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas        95 Jan  9 19:36 pilot_heartbeat.json
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas  45722767 Jan  9 19:36 HITS.47962010._001889.pool.root.1
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas      1049 Jan  9 19:36 memory_monitor_summary.json
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas   1188199 Jan  9 19:36 log.47962010._001889.job.log.tgz.1
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas      8626 Jan  9 19:36 heartbeat.json
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 19:37 boinc_mmap_file
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas        27 Jan  9 19:37 wrapper_checkpoint.txt
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas      4818 Jan  9 19:38 pilotlog.txt
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas    538443 Jan  9 19:38 log.47962010._001889.job.log.1
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas       353 Jan  9 19:38 output.list
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas       620 Jan  9 19:38 runtime_log
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas   1751040 Jan  9 19:38 result.tar.gz
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas      9342 Jan  9 19:38 runtime_log.err
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas       659 Jan  9 19:38 MgiMDmI5Ty8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdfmKDm0mgZXo.diag
[2026-01-09 19:38:00] -rw-r--r-- 1 boincer umatlas     22641 Jan  9 19:38 stderr.txt
[2026-01-09 19:38:00] HITS file was successfully produced:
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas 45722767 Jan  9 19:36 shared/HITS.pool.root.1
[2026-01-09 19:38:00]  *** Contents of shared directory: ***
[2026-01-09 19:38:00] total 430748
[2026-01-09 19:38:00] -rw-r--r-- 2 boincer umatlas 392998403 Jan  9 18:37 ATLAS.root_0
[2026-01-09 19:38:00] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 18:37 start_atlas.sh
[2026-01-09 19:38:00] -rw-r--r-- 2 boincer umatlas    592617 Jan  9 18:37 input.tar.gz
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas  45722767 Jan  9 19:36 HITS.pool.root.1
[2026-01-09 19:38:00] -rw------- 1 boincer umatlas   1751040 Jan  9 19:38 result.tar.gz
19:38:01 (9359): run_atlas exited; CPU time 23256.449839
19:38:01 (9359): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN