Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:15:21 (2923687): wrapper (7.7.26015): starting
19:15:21 (2923687): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 19:15:21] Arguments: --nthreads 9
[2026-01-09 19:15:21] Threads: 9
[2026-01-09 19:15:21] Checking for CVMFS
[2026-01-09 19:15:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:15:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:15:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:15:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:15:42] 2.13.3.0 11416 94070 225220 154961 0 109 27633172 32935936 21869 16776704 0 615693822 99.538 745890278 37340 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 19:15:42] CVMFS is ok
[2026-01-09 19:15:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:15:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:15:42] Further information can be found at the LHC@home message board.
[2026-01-09 19:15:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:15:42] Checking for apptainer binary...
[2026-01-09 19:15:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:15:42] Running /usr/bin/apptainer --version
[2026-01-09 19:15:42] apptainer version 1.4.5-2.el9
[2026-01-09 19:15:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:15:43] c7-2-16.aglt2.org
[2026-01-09 19:15:43] apptainer works
[2026-01-09 19:15:43] Set ATHENA_PROC_NUMBER=9
[2026-01-09 19:15:43] Set ATHENA_CORE_NUMBER=9
[2026-01-09 19:15:43] Starting ATLAS job with PandaID=6963155379
[2026-01-09 19:15:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:57:22]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:57:22] 2026-01-10 04:56:43,319 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:57:22] 2026-01-10 04:56:43,692 | INFO     | time since job start (16797s) is within the limit (349056.0s)
[2026-01-09 23:57:22] 2026-01-10 04:56:45,699 | INFO     | time since job start (16799s) is within the limit (349056.0s)
[2026-01-09 23:57:22] 2026-01-10 04:56:45,824 | INFO     | monitor loop #1027: job 0:6963155379 is in state 'finished'
[2026-01-09 23:57:22] 2026-01-10 04:56:45,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:57:22] 2026-01-10 04:56:47,707 | INFO     | time since job start (16801s) is within the limit (349056.0s)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,333 | INFO     | monitor loop #1028: job 0:6963155379 is in state 'finished'
[2026-01-09 23:57:22] 2026-01-10 04:56:48,333 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,339 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 23:57:22] 2026-01-10 04:56:48,345 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3150.5765000000006
[2026-01-09 23:57:22] 2026-01-10 04:56:48,382 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963155379/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,383 | INFO     | extracted standard info from prmon json
[2026-01-09 23:57:22] 2026-01-10 04:56:48,383 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:57:22] 2026-01-10 04:56:48,383 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:57:22] 2026-01-10 04:56:48,383 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:57:22] 2026-01-10 04:56:48,383 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:57:22] 2026-01-10 04:56:48,387 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:57:22] 2026-01-10 04:56:48,387 | INFO     | sum of square deviations: 6378359981.051059
[2026-01-09 23:57:22] 2026-01-10 04:56:48,388 | INFO     | sum of deviations: 12133895107.744526
[2026-01-09 23:57:22] 2026-01-10 04:56:48,389 | INFO     | mean x: 1768012645.7664235
[2026-01-09 23:57:22] 2026-01-10 04:56:48,389 | INFO     | mean y: 2549676.1678832117
[2026-01-09 23:57:22] 2026-01-10 04:56:48,389 | INFO     | intersect: -3360835278.056752
[2026-01-09 23:57:22] 2026-01-10 04:56:48,389 | INFO     | chi2: 3.913683357492533
[2026-01-09 23:57:22] 2026-01-10 04:56:48,389 | INFO     | sum of square deviations: 6035520003.189588
[2026-01-09 23:57:22] 2026-01-10 04:56:48,391 | INFO     | sum of deviations: 29412611464.040874
[2026-01-09 23:57:22] 2026-01-10 04:56:48,391 | INFO     | mean x: 1768012493.2713754
[2026-01-09 23:57:22] 2026-01-10 04:56:48,391 | INFO     | mean y: 2557245.8624535315
[2026-01-09 23:57:22] 2026-01-10 04:56:48,391 | INFO     | intersect: -8613413623.37164
[2026-01-09 23:57:22] 2026-01-10 04:56:48,391 | INFO     | chi2: 3.2441531344238133
[2026-01-09 23:57:22] 2026-01-10 04:56:48,391 | INFO     | current chi2=3.2441531344238133 (change=17.107419326270758 %)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,391 | INFO     | right removable region: 268
[2026-01-09 23:57:22] 2026-01-10 04:56:48,392 | INFO     | sum of square deviations: 6035475473.1895895
[2026-01-09 23:57:22] 2026-01-10 04:56:48,393 | INFO     | sum of deviations: -64926519299.43129
[2026-01-09 23:57:22] 2026-01-10 04:56:48,393 | INFO     | mean x: 1768012798.2713754
[2026-01-09 23:57:22] 2026-01-10 04:56:48,393 | INFO     | mean y: 2583863.814126394
[2026-01-09 23:57:22] 2026-01-10 04:56:48,393 | INFO     | intersect: 19021949873.75402
[2026-01-09 23:57:22] 2026-01-10 04:56:48,394 | INFO     | chi2: 0.9671246961432279
[2026-01-09 23:57:22] 2026-01-10 04:56:48,394 | INFO     | current chi2=0.9671246961432279 (change=75.28863201741345 %)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,394 | INFO     | sum of square deviations: 5705102827.814381
[2026-01-09 23:57:22] 2026-01-10 04:56:48,395 | INFO     | sum of deviations: -74210945627.24623
[2026-01-09 23:57:22] 2026-01-10 04:56:48,395 | INFO     | mean x: 1768012950.7765152
[2026-01-09 23:57:22] 2026-01-10 04:56:48,395 | INFO     | mean y: 2588116.928030303
[2026-01-09 23:57:22] 2026-01-10 04:56:48,396 | INFO     | intersect: 23000580776.879436
[2026-01-09 23:57:22] 2026-01-10 04:56:48,396 | INFO     | chi2: 0.8789264618501577
[2026-01-09 23:57:22] 2026-01-10 04:56:48,396 | INFO     | current chi2=0.8789264618501577 (change=9.119634173834438 %)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,396 | INFO     | left removable region: 20
[2026-01-09 23:57:22] 2026-01-10 04:56:48,396 | INFO     | sum of square deviations: 4729365856.80244
[2026-01-09 23:57:22] 2026-01-10 04:56:48,397 | INFO     | sum of deviations: -35009089621.93548
[2026-01-09 23:57:22] 2026-01-10 04:56:48,398 | INFO     | mean x: 1768013072.778226
[2026-01-09 23:57:22] 2026-01-10 04:56:48,398 | INFO     | mean y: 2586163.419354839
[2026-01-09 23:57:22] 2026-01-10 04:56:48,398 | INFO     | intersect: 13090287557.596367
[2026-01-09 23:57:22] 2026-01-10 04:56:48,398 | INFO     | chi2: 0.1160940766748925
[2026-01-09 23:57:22] 2026-01-10 04:56:48,398 | INFO     | current memory leak: -7.40 B/s (using 248 data points, chi2=0.12)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | could have reported an average CPU frequency of 3209 MHz (13 samples)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | ..............................
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | . Timing measurements:
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | . get job = 0 s
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | . initial setup = 6 s
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | . payload setup = 33 s
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | . stage-in = 0 s
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | . payload execution = 16679 s
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | . stage-out = 2 s
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | . log creation = 0 s
[2026-01-09 23:57:22] 2026-01-10 04:56:48,399 | INFO     | ..............................
[2026-01-09 23:57:22] 2026-01-10 04:56:48,523 | INFO     | 
[2026-01-09 23:57:22] 2026-01-10 04:56:48,524 | INFO     | job summary report
[2026-01-09 23:57:22] 2026-01-10 04:56:48,524 | INFO     | --------------------------------------------------
[2026-01-09 23:57:22] 2026-01-10 04:56:48,524 | INFO     | PanDA job id: 6963155379
[2026-01-09 23:57:22] 2026-01-10 04:56:48,524 | INFO     | task id: 47898826
[2026-01-09 23:57:22] 2026-01-10 04:56:48,524 | INFO     | errors: (none)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,524 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | pilot state: finished 
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | transexitcode: 0
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | exeerrorcode: 0
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | exeerrordiag: 
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | exitcode: 0
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | exitmsg: OK
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | cpuconsumptiontime: 46193 s
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | nevents: 400
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | neventsw: 0
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | pid: 2939604
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | pgrp: 2939604
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | corecount: 9
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | event service: False
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | sizes: {0: 2283800, 1: 2283999, 12: 2283999, 23: 2284027, 29: 2284317, 34: 2284345, 16717: 2316219, 16720: 2325217, 16724: 2325273, 16743: 2325467}
[2026-01-09 23:57:22] 2026-01-10 04:56:48,525 | INFO     | --------------------------------------------------
[2026-01-09 23:57:22] 2026-01-10 04:56:48,526 | INFO     | 
[2026-01-09 23:57:22] 2026-01-10 04:56:48,526 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 23:57:22] 2026-01-10 04:56:48,588 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,589 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,590 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,590 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,590 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,590 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,590 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:57:22] 2026-01-10 04:56:48,590 | INFO     | job 6963155379 has completed (purged errors)
[2026-01-09 23:57:22] 2026-01-10 04:56:48,590 | INFO     | overall cleanup function is called
[2026-01-09 23:57:22] 2026-01-10 04:56:49,611 | INFO     | --- collectZombieJob: --- 10, [2939604]
[2026-01-09 23:57:22] 2026-01-10 04:56:49,611 | INFO     | zombie collector waiting for pid 2939604
[2026-01-09 23:57:22] 2026-01-10 04:56:49,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:57:22] 2026-01-10 04:56:49,611 | INFO     | collected zombie processes
[2026-01-09 23:57:22] 2026-01-10 04:56:49,611 | INFO     | will attempt to kill all subprocesses of pid=2939604
[2026-01-09 23:57:22] 2026-01-10 04:56:50,029 | INFO     | process IDs to be killed: [2939604] (in reverse order)
[2026-01-09 23:57:22] 2026-01-10 04:56:50,164 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:57:22] 2026-01-10 04:56:50,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:57:22] 2026-01-10 04:56:50,183 | INFO     | did not find any defunct processes belonging to 2939604
[2026-01-09 23:57:22] 2026-01-10 04:56:50,201 | INFO     | did not find any defunct processes belonging to 2939604
[2026-01-09 23:57:22] 2026-01-10 04:56:50,201 | INFO     | ready for new job
[2026-01-09 23:57:22] 2026-01-10 04:56:50,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:57:22] 2026-01-10 04:56:50,204 | INFO     | ***************************************
[2026-01-09 23:57:22] 2026-01-10 04:56:50,225 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:57:22] 2026-01-10 04:56:50,225 | INFO     | ***************************************
[2026-01-09 23:57:22] 2026-01-10 04:56:50,225 | INFO     | 
[2026-01-09 23:57:22] 2026-01-10 04:56:50,251 | INFO     | architecture information:
[2026-01-09 23:57:22] 2026-01-10 04:56:50,268 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:57:22] 2026-01-10 04:56:50,311 | INFO     | cat /etc/os-release:
[2026-01-09 23:57:22] NAME="CentOS Linux"
[2026-01-09 23:57:22] VERSION="7 (Core)"
[2026-01-09 23:57:22] ID="centos"
[2026-01-09 23:57:22] ID_LIKE="rhel fedora"
[2026-01-09 23:57:22] VERSION_ID="7"
[2026-01-09 23:57:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:57:22] ANSI_COLOR="0;31"
[2026-01-09 23:57:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:57:22] HOME_URL="https://www.centos.org/"
[2026-01-09 23:57:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:57:22] 
[2026-01-09 23:57:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:57:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:57:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:57:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:57:22] 
[2026-01-09 23:57:22] 2026-01-10 04:56:50,311 | INFO     | ***************************************
[2026-01-09 23:57:22] 2026-01-10 04:56:50,815 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 23:57:22] 2026-01-10 04:56:50,845 | INFO     | sufficient remaining disk space (75931582464 B)
[2026-01-09 23:57:22] 2026-01-10 04:56:50,846 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:57:22] 2026-01-10 04:56:50,846 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:57:22] 2026-01-10 04:56:50,847 | INFO     | update_server=False
[2026-01-09 23:57:22] 2026-01-10 04:56:50,847 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:57:22] 2026-01-10 04:56:50,864 | INFO     | all data control threads have been joined
[2026-01-09 23:57:22] 2026-01-10 04:56:51,021 | INFO     | all job control threads have been joined
[2026-01-09 23:57:22] 2026-01-10 04:56:51,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:57:22] 2026-01-10 04:56:51,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:57:22] 2026-01-10 04:56:51,844 | INFO     | aborting loop
[2026-01-09 23:57:22] 2026-01-10 04:56:51,852 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:51,870 | INFO     | [data] control thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:52,027 | INFO     | [job] control thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:52,033 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:52,088 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:52,359 | INFO     | all payload control threads have been joined
[2026-01-09 23:57:22] 2026-01-10 04:56:52,682 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:52,850 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:52,929 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:52,964 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:52,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:57:22] 2026-01-10 04:56:53,098 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:53,253 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:53,255 | INFO     | [job] validate thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:53,365 | INFO     | [payload] control thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:53,540 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:57:22] 2026-01-10 04:56:54,546 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:56:57,000 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:57:01,139 | INFO     | job.realtimelogging is not enabled
[2026-01-09 23:57:22] 2026-01-10 04:57:02,144 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:57:22] 2026-01-10 04:57:14,615 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:57:22] 2026-01-10 04:57:16,191 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140564283119424)>', '<ExcThread(monitor, started 140563802220288)>']
[2026-01-09 23:57:22] 2026-01-10 04:57:21,221 | INFO     | all workflow threads have been joined
[2026-01-09 23:57:22] 2026-01-10 04:57:21,221 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:57:22] 2026-01-10 04:57:21,221 | INFO     | traces error code: 0
[2026-01-09 23:57:22] 2026-01-10 04:57:21,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:57:22] 2026-01-10 04:57:21,422 | INFO     | PID=2930140 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:57:22] 2026-01-10 04:57:21,422 | INFO     | .. there are 21 such processes running
[2026-01-09 23:57:22] 2026-01-10 04:57:21,423 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:57:22] 2026-01-10 04:57:21,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:57:22] 2026-01-10 04:57:21,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:57:22] 2026-01-10 04:57:21,423 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:57:22] 2026-01-10 04:57:21,423 | INFO     | [monitor] control thread has ended
[2026-01-09 23:57:22] 2026-01-10 04:57:21,537 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:57:22] 2026-01-10 04:57:21,560 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:57:22] 2026-01-10 04:57:21,582 [wrapper] pilotpid: 2930140
[2026-01-09 23:57:22] 2026-01-10 04:57:21,603 [wrapper] Pilot exit status: 0
[2026-01-09 23:57:22] 2026-01-10 04:57:21,738 [wrapper] pandaids: 6963155379
[2026-01-09 23:57:22] 2026-01-10 04:57:22,448 [wrapper] cleanup supervisor_pilot 3960950 2930141
[2026-01-09 23:57:22] 2026-01-10 04:57:22,452 [wrapper] Test setup, not cleaning
[2026-01-09 23:57:22] 2026-01-10 04:57:22,456 [wrapper] apfmon messages muted
[2026-01-09 23:57:22] 2026-01-10 04:57:22,459 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:57:22] 2026-01-10 04:57:22,461 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:57:22]  *** Error codes and diagnostics ***
[2026-01-09 23:57:22]     "exeErrorCode": 0,
[2026-01-09 23:57:22]     "exeErrorDiag": "",
[2026-01-09 23:57:22]     "pilotErrorCode": 0,
[2026-01-09 23:57:22]     "pilotErrorDiag": "",
[2026-01-09 23:57:22]  *** Listing of results directory ***
[2026-01-09 23:57:22] total 443388
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 14:06 pilot3.tar.gz
[2026-01-09 23:57:22] -rwx------. 1 boincer umatlas     36322 Jan  8 14:06 runpilot2-wrapper.sh
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 14:07 queuedata.json
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas       100 Jan  9 19:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:57:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 19:15 run_atlas
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas       105 Jan  9 19:15 job.xml
[2026-01-09 23:57:22] -rw-r--r--. 2 boincer umatlas 222873864 Jan  9 19:15 EVNT.47898824._001186.pool.root.1
[2026-01-09 23:57:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:15 start_atlas.sh
[2026-01-09 23:57:22] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 19:15 shared
[2026-01-09 23:57:22] -rw-r--r--. 2 boincer umatlas    592393 Jan  9 19:15 input.tar.gz
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas         0 Jan  9 19:15 boinc_lockfile
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 19:15 pandaJob.out
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas        57 Jan  9 19:15 setup.sh.local
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas    989374 Jan  9 19:16 agis_schedconf.cvmfs.json
[2026-01-09 23:57:22] drwx------. 5 boincer umatlas      4096 Jan  9 19:16 pilot3
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas      6945 Jan  9 23:47 init_data.xml
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas 222044109 Jan  9 23:55 HITS.47898826._030629.pool.root.1
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas       530 Jan  9 23:55 boinc_task_state.xml
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas      1042 Jan  9 23:56 memory_monitor_summary.json
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas   1516240 Jan  9 23:56 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas    490246 Jan  9 23:56 log.47898826._030629.job.log.tgz.1
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas      7789 Jan  9 23:56 heartbeat.json
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:57 boinc_mmap_file
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas        28 Jan  9 23:57 wrapper_checkpoint.txt
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas        95 Jan  9 23:57 pilot_heartbeat.json
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas       823 Jan  9 23:57 pilotlog.txt
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas   2113729 Jan  9 23:57 log.47898826._030629.job.log.1
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas       357 Jan  9 23:57 output.list
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:57 runtime_log
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas   2621440 Jan  9 23:57 result.tar.gz
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 23:57 runtime_log.err
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas       657 Jan  9 23:57 Lg5LDmKWAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLClKDmZhucxm.diag
[2026-01-09 23:57:22] -rw-r--r--. 1 boincer umatlas     16470 Jan  9 23:57 stderr.txt
[2026-01-09 23:57:22] HITS file was successfully produced:
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas 222044109 Jan  9 23:55 shared/HITS.pool.root.1
[2026-01-09 23:57:22]  *** Contents of shared directory: ***
[2026-01-09 23:57:22] total 437652
[2026-01-09 23:57:22] -rw-r--r--. 2 boincer umatlas 222873864 Jan  9 19:15 ATLAS.root_0
[2026-01-09 23:57:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:15 start_atlas.sh
[2026-01-09 23:57:22] -rw-r--r--. 2 boincer umatlas    592393 Jan  9 19:15 input.tar.gz
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas 222044109 Jan  9 23:55 HITS.pool.root.1
[2026-01-09 23:57:22] -rw-------. 1 boincer umatlas   2621440 Jan  9 23:57 result.tar.gz
23:57:24 (2923687): run_atlas exited; CPU time 46781.024914
23:57:24 (2923687): called boinc_finish(0)

</stderr_txt>
]]>

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