Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:23:30 (562502): wrapper (7.7.26015): starting
19:23:30 (562502): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 19:23:30] Arguments: --nthreads 9
[2026-01-09 19:23:30] Threads: 9
[2026-01-09 19:23:30] Checking for CVMFS
[2026-01-09 19:23:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:23:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:23:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:23:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:23:32] 2.13.3.0 25561 50742 281504 154962 3 107 35661246 40960000 14190 16776704 0 79416885 99.684 60605222 35983 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 19:23:32] CVMFS is ok
[2026-01-09 19:23:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:23:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:23:32] Further information can be found at the LHC@home message board.
[2026-01-09 19:23:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:23:32] Checking for apptainer binary...
[2026-01-09 19:23:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:23:32] Running /usr/bin/apptainer --version
[2026-01-09 19:23:32] apptainer version 1.4.5-2.el9
[2026-01-09 19:23:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:23:32] c7-11-15.aglt2.org
[2026-01-09 19:23:32] apptainer works
[2026-01-09 19:23:32] Set ATHENA_PROC_NUMBER=9
[2026-01-09 19:23:32] Set ATHENA_CORE_NUMBER=9
[2026-01-09 19:23:32] Starting ATLAS job with PandaID=6964539400
[2026-01-09 19:23:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:17:46]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:17:46] 2026-01-10 02:16:58,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:17:46] 2026-01-10 02:16:58,953 | INFO     | time since job start (6750s) is within the limit (349056.0s)
[2026-01-09 21:17:46] 2026-01-10 02:16:58,953 | INFO     | 6756s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 21:17:46] 2026-01-10 02:17:00,719 | INFO     | monitor loop #485: job 0:6964539400 is in state 'finished'
[2026-01-09 21:17:46] 2026-01-10 02:17:00,719 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:17:46] 2026-01-10 02:17:00,961 | INFO     | time since job start (6752s) is within the limit (349056.0s)
[2026-01-09 21:17:46] 2026-01-10 02:17:02,967 | INFO     | time since job start (6754s) is within the limit (349056.0s)
[2026-01-09 21:17:46] 2026-01-10 02:17:03,225 | INFO     | monitor loop #486: job 0:6964539400 is in state 'finished'
[2026-01-09 21:17:46] 2026-01-10 02:17:03,225 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:17:46] 2026-01-10 02:17:04,974 | INFO     | time since job start (6756s) is within the limit (349056.0s)
[2026-01-09 21:17:46] 2026-01-10 02:17:05,731 | INFO     | monitor loop #487: job 0:6964539400 is in state 'finished'
[2026-01-09 21:17:46] 2026-01-10 02:17:05,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:17:46] 2026-01-10 02:17:06,982 | INFO     | time since job start (6758s) is within the limit (349056.0s)
[2026-01-09 21:17:46] 2026-01-10 02:17:08,239 | INFO     | monitor loop #488: job 0:6964539400 is in state 'finished'
[2026-01-09 21:17:46] 2026-01-10 02:17:08,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:17:46] 2026-01-10 02:17:08,676 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 21:17:46] 2026-01-10 02:17:08,684 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.184515625
[2026-01-09 21:17:46] 2026-01-10 02:17:08,718 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6964539400/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 21:17:46] 2026-01-10 02:17:08,719 | INFO     | extracted standard info from prmon json
[2026-01-09 21:17:46] 2026-01-10 02:17:08,719 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 21:17:46] 2026-01-10 02:17:08,719 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 21:17:46] 2026-01-10 02:17:08,721 | INFO     | fitting pss+swap vs Time
[2026-01-09 21:17:46] 2026-01-10 02:17:08,721 | INFO     | sum of square deviations: 390343450.99074095
[2026-01-09 21:17:46] 2026-01-10 02:17:08,721 | INFO     | sum of deviations: -86468443110.2778
[2026-01-09 21:17:46] 2026-01-10 02:17:08,721 | INFO     | mean x: 1768008075.9907408
[2026-01-09 21:17:46] 2026-01-10 02:17:08,722 | INFO     | mean y: 1991930.7222222222
[2026-01-09 21:17:46] 2026-01-10 02:17:08,722 | INFO     | intersect: 391649156368.3378
[2026-01-09 21:17:46] 2026-01-10 02:17:08,722 | INFO     | chi2: 28.711129415423038
[2026-01-09 21:17:46] 2026-01-10 02:17:08,722 | INFO     | sum of square deviations: 338614829.33980525
[2026-01-09 21:17:46] 2026-01-10 02:17:08,722 | INFO     | sum of deviations: -63293733254.13595
[2026-01-09 21:17:46] 2026-01-10 02:17:08,723 | INFO     | mean x: 1768007923.5631068
[2026-01-09 21:17:46] 2026-01-10 02:17:08,723 | INFO     | mean y: 2060380.1747572816
[2026-01-09 21:17:46] 2026-01-10 02:17:08,723 | INFO     | intersect: 330477314885.0648
[2026-01-09 21:17:46] 2026-01-10 02:17:08,731 | INFO     | chi2: 26.11148918929792
[2026-01-09 21:17:46] 2026-01-10 02:17:08,731 | INFO     | current chi2=26.11148918929792 (change=9.054468699265602 %)
[2026-01-09 21:17:46] 2026-01-10 02:17:08,731 | INFO     | right removable region: 102
[2026-01-09 21:17:46] 2026-01-10 02:17:08,731 | INFO     | sum of square deviations: 338516619.33980525
[2026-01-09 21:17:46] 2026-01-10 02:17:08,732 | INFO     | sum of deviations: -114181236113.50485
[2026-01-09 21:17:46] 2026-01-10 02:17:08,732 | INFO     | mean x: 1768008228.5631068
[2026-01-09 21:17:46] 2026-01-10 02:17:08,732 | INFO     | mean y: 2073302.077669903
[2026-01-09 21:17:46] 2026-01-10 02:17:08,732 | INFO     | intersect: 596349057358.248
[2026-01-09 21:17:46] 2026-01-10 02:17:08,732 | INFO     | chi2: 21.56952810966993
[2026-01-09 21:17:46] 2026-01-10 02:17:08,732 | INFO     | current chi2=21.56952810966993 (change=24.873982497939583 %)
[2026-01-09 21:17:46] 2026-01-10 02:17:08,732 | INFO     | left removable region: 10
[2026-01-09 21:17:46] 2026-01-10 02:17:08,732 | INFO     | sum of square deviations: 241151561.25
[2026-01-09 21:17:46] 2026-01-10 02:17:08,733 | INFO     | sum of deviations: -104185389823.00003
[2026-01-09 21:17:46] 2026-01-10 02:17:08,733 | INFO     | mean x: 1768008198.25
[2026-01-09 21:17:46] 2026-01-10 02:17:08,733 | INFO     | mean y: 2237312.652173913
[2026-01-09 21:17:46] 2026-01-10 02:17:08,733 | INFO     | intersect: 763839810621.8989
[2026-01-09 21:17:46] 2026-01-10 02:17:08,733 | INFO     | chi2: 15.218470594820394
[2026-01-09 21:17:46] 2026-01-10 02:17:08,733 | INFO     | current memory leak: -432.03 B/s (using 92 data points, chi2=15.22)
[2026-01-09 21:17:46] 2026-01-10 02:17:08,734 | INFO     | could have reported an average CPU frequency of 3290 MHz (7 samples)
[2026-01-09 21:17:46] 2026-01-10 02:17:08,734 | INFO     | ..............................
[2026-01-09 21:17:46] 2026-01-10 02:17:08,742 | INFO     | . Timing measurements:
[2026-01-09 21:17:46] 2026-01-10 02:17:08,742 | INFO     | . get job = 0 s
[2026-01-09 21:17:46] 2026-01-10 02:17:08,742 | INFO     | . initial setup = 4 s
[2026-01-09 21:17:46] 2026-01-10 02:17:08,742 | INFO     | . payload setup = 61 s
[2026-01-09 21:17:46] 2026-01-10 02:17:08,742 | INFO     | . stage-in = 0 s
[2026-01-09 21:17:46] 2026-01-10 02:17:08,742 | INFO     | . payload execution = 6582 s
[2026-01-09 21:17:46] 2026-01-10 02:17:08,742 | INFO     | . stage-out = 2 s
[2026-01-09 21:17:46] 2026-01-10 02:17:08,742 | INFO     | . log creation = 1 s
[2026-01-09 21:17:46] 2026-01-10 02:17:08,742 | INFO     | ..............................
[2026-01-09 21:17:46] 2026-01-10 02:17:09,011 | INFO     | time since job start (6761s) is within the limit (349056.0s)
[2026-01-09 21:17:46] 2026-01-10 02:17:09,070 | INFO     | 
[2026-01-09 21:17:46] 2026-01-10 02:17:09,071 | INFO     | job summary report
[2026-01-09 21:17:46] 2026-01-10 02:17:09,071 | INFO     | --------------------------------------------------
[2026-01-09 21:17:46] 2026-01-10 02:17:09,071 | INFO     | PanDA job id: 6964539400
[2026-01-09 21:17:46] 2026-01-10 02:17:09,071 | INFO     | task id: 47962010
[2026-01-09 21:17:46] 2026-01-10 02:17:09,071 | INFO     | errors: (none)
[2026-01-09 21:17:46] 2026-01-10 02:17:09,071 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | pilot state: finished 
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | transexitcode: 0
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | exeerrorcode: 0
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | exeerrordiag: 
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | exitcode: 0
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | exitmsg: OK
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | cpuconsumptiontime: 12557 s
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | nevents: 50
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | neventsw: 0
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | pid: 579922
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | pgrp: 579922
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | corecount: 9
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | event service: False
[2026-01-09 21:17:46] 2026-01-10 02:17:09,072 | INFO     | sizes: {0: 2283741, 1: 2284597, 12: 2284597, 23: 2284625, 33: 2284915, 34: 2284971, 6647: 2313071, 6648: 2313070, 6652: 2322120, 6655: 2322176, 6702: 2322422}
[2026-01-09 21:17:46] 2026-01-10 02:17:09,073 | INFO     | --------------------------------------------------
[2026-01-09 21:17:46] 2026-01-10 02:17:09,073 | INFO     | 
[2026-01-09 21:17:46] 2026-01-10 02:17:09,073 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 21:17:46] 2026-01-10 02:17:09,434 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,435 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,435 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,435 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,435 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,435 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,435 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,435 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,435 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,435 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,435 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | job 6964539400 has completed (purged errors)
[2026-01-09 21:17:46] 2026-01-10 02:17:09,436 | INFO     | overall cleanup function is called
[2026-01-09 21:17:46] 2026-01-10 02:17:10,467 | INFO     | --- collectZombieJob: --- 10, [579922]
[2026-01-09 21:17:46] 2026-01-10 02:17:10,467 | INFO     | zombie collector waiting for pid 579922
[2026-01-09 21:17:46] 2026-01-10 02:17:10,467 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:17:46] 2026-01-10 02:17:10,467 | INFO     | collected zombie processes
[2026-01-09 21:17:46] 2026-01-10 02:17:10,467 | INFO     | will attempt to kill all subprocesses of pid=579922
[2026-01-09 21:17:46] 2026-01-10 02:17:11,143 | INFO     | process IDs to be killed: [579922] (in reverse order)
[2026-01-09 21:17:46] 2026-01-10 02:17:12,095 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:17:46] 2026-01-10 02:17:12,095 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:17:46] 2026-01-10 02:17:12,120 | INFO     | did not find any defunct processes belonging to 579922
[2026-01-09 21:17:46] 2026-01-10 02:17:12,132 | INFO     | did not find any defunct processes belonging to 579922
[2026-01-09 21:17:46] 2026-01-10 02:17:12,133 | INFO     | ready for new job
[2026-01-09 21:17:46] 2026-01-10 02:17:12,133 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:17:46] 2026-01-10 02:17:12,134 | INFO     | ***************************************
[2026-01-09 21:17:46] 2026-01-10 02:17:12,134 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:17:46] 2026-01-10 02:17:12,134 | INFO     | ***************************************
[2026-01-09 21:17:46] 2026-01-10 02:17:12,135 | INFO     | 
[2026-01-09 21:17:46] 2026-01-10 02:17:12,138 | INFO     | architecture information:
[2026-01-09 21:17:46] 2026-01-10 02:17:12,146 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:17:46] 2026-01-10 02:17:12,476 | INFO     | cat /etc/os-release:
[2026-01-09 21:17:46] NAME="CentOS Linux"
[2026-01-09 21:17:46] VERSION="7 (Core)"
[2026-01-09 21:17:46] ID="centos"
[2026-01-09 21:17:46] ID_LIKE="rhel fedora"
[2026-01-09 21:17:46] VERSION_ID="7"
[2026-01-09 21:17:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:17:46] ANSI_COLOR="0;31"
[2026-01-09 21:17:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:17:46] HOME_URL="https://www.centos.org/"
[2026-01-09 21:17:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:17:46] 
[2026-01-09 21:17:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:17:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:17:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:17:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:17:46] 
[2026-01-09 21:17:46] 2026-01-10 02:17:12,477 | INFO     | ***************************************
[2026-01-09 21:17:46] 2026-01-10 02:17:12,981 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 21:17:46] 2026-01-10 02:17:13,141 | INFO     | sufficient remaining disk space (83979403264 B)
[2026-01-09 21:17:46] 2026-01-10 02:17:13,141 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:17:46] 2026-01-10 02:17:13,142 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:17:46] 2026-01-10 02:17:13,142 | INFO     | update_server=False
[2026-01-09 21:17:46] 2026-01-10 02:17:13,142 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:17:46] 2026-01-10 02:17:13,143 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:17:46] 2026-01-10 02:17:13,267 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 21:17:46] 2026-01-10 02:17:13,270 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 21:17:46] 2026-01-10 02:17:13,270 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:17:46] 2026-01-10 02:17:13,270 | INFO     | will abort loop
[2026-01-09 21:17:46] 2026-01-10 02:17:13,276 | INFO     | all data control threads have been joined
[2026-01-09 21:17:46] 2026-01-10 02:17:13,819 | INFO     | all payload control threads have been joined
[2026-01-09 21:17:46] 2026-01-10 02:17:14,096 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:17:46] 2026-01-10 02:17:14,141 | INFO     | all job control threads have been joined
[2026-01-09 21:17:46] 2026-01-10 02:17:14,147 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:14,200 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:17:46] 2026-01-10 02:17:14,276 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:14,282 | INFO     | [data] control thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:14,402 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:14,803 | INFO     | [job] validate thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:14,827 | INFO     | [payload] control thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:14,923 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:14,973 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:14,986 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:14,986 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:14,987 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:15,104 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:15,147 | INFO     | [job] control thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:15,479 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:16,207 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:17,179 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:17:46] 2026-01-10 02:17:38,394 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:17:46] 2026-01-10 02:17:39,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140511214602048)>', '<ExcThread(monitor, started 140510941386496)>']
[2026-01-09 21:17:46] 2026-01-10 02:17:43,267 | INFO     | PID=566976 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 21:17:46] 2026-01-10 02:17:43,267 | INFO     | .. there are 11 such processes running
[2026-01-09 21:17:46] 2026-01-10 02:17:43,268 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:17:46] 2026-01-10 02:17:43,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:17:46] 2026-01-10 02:17:43,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:17:46] 2026-01-10 02:17:43,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:17:46] 2026-01-10 02:17:43,268 | INFO     | [monitor] control thread has ended
[2026-01-09 21:17:46] 2026-01-10 02:17:44,469 | INFO     | all workflow threads have been joined
[2026-01-09 21:17:46] 2026-01-10 02:17:44,469 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:17:46] 2026-01-10 02:17:44,469 | INFO     | traces error code: 0
[2026-01-09 21:17:46] 2026-01-10 02:17:44,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:17:46] 2026-01-10 02:17:44,880 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:17:46] 2026-01-10 02:17:44,933 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:17:46] 2026-01-10 02:17:44,975 [wrapper] pilotpid: 566976
[2026-01-09 21:17:46] 2026-01-10 02:17:45,021 [wrapper] Pilot exit status: 0
[2026-01-09 21:17:46] 2026-01-10 02:17:45,209 [wrapper] pandaids: 6964539400
[2026-01-09 21:17:46] 2026-01-10 02:17:45,864 [wrapper] cleanup supervisor_pilot  756343 566977
[2026-01-09 21:17:46] 2026-01-10 02:17:45,904 [wrapper] Test setup, not cleaning
[2026-01-09 21:17:46] 2026-01-10 02:17:45,938 [wrapper] apfmon messages muted
[2026-01-09 21:17:46] 2026-01-10 02:17:46,015 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:17:46] 2026-01-10 02:17:46,072 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:17:46]  *** Error codes and diagnostics ***
[2026-01-09 21:17:46]     "exeErrorCode": 0,
[2026-01-09 21:17:46]     "exeErrorDiag": "",
[2026-01-09 21:17:46]     "pilotErrorCode": 0,
[2026-01-09 21:17:46]     "pilotErrorDiag": "",
[2026-01-09 21:17:46]  *** Listing of results directory ***
[2026-01-09 21:17:46] total 435600
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 10:55 pilot3.tar.gz
[2026-01-09 21:17:46] -rwx------. 1 boincer umatlas     36322 Jan  9 11:00 runpilot2-wrapper.sh
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 11:00 queuedata.json
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas       100 Jan  9 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:17:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 19:23 run_atlas
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas       105 Jan  9 19:23 job.xml
[2026-01-09 21:17:46] -rw-r--r--. 2 boincer umatlas 391230903 Jan  9 19:23 EVNT.47962006._000048.pool.root.1
[2026-01-09 21:17:46] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:23 start_atlas.sh
[2026-01-09 21:17:46] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 19:23 shared
[2026-01-09 21:17:46] -rw-r--r--. 2 boincer umatlas    592614 Jan  9 19:23 input.tar.gz
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas         0 Jan  9 19:23 boinc_lockfile
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas      2890 Jan  9 19:23 pandaJob.out
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas        57 Jan  9 19:23 setup.sh.local
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas    989374 Jan  9 19:24 agis_schedconf.cvmfs.json
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas   1516240 Jan  9 19:24 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:17:46] drwx------. 5 boincer umatlas      4096 Jan  9 19:24 pilot3
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas       530 Jan  9 20:43 boinc_task_state.xml
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas      6907 Jan  9 21:11 init_data.xml
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas  46366042 Jan  9 21:15 HITS.47962010._001964.pool.root.1
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas      1026 Jan  9 21:16 memory_monitor_summary.json
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas   1321461 Jan  9 21:16 log.47962010._001964.job.log.tgz.1
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas      8547 Jan  9 21:17 heartbeat.json
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas        95 Jan  9 21:17 pilot_heartbeat.json
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas      5009 Jan  9 21:17 pilotlog.txt
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 21:17 boinc_mmap_file
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas    947458 Jan  9 21:17 log.47962010._001964.job.log.1
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas        27 Jan  9 21:17 wrapper_checkpoint.txt
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas       353 Jan  9 21:17 output.list
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas       620 Jan  9 21:17 runtime_log
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas   2283520 Jan  9 21:17 result.tar.gz
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas      9342 Jan  9 21:17 runtime_log.err
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas       654 Jan  9 21:17 dRzLDmS5Ty8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsThKDm95QgJm.diag
[2026-01-09 21:17:46] -rw-r--r--. 1 boincer umatlas     21674 Jan  9 21:17 stderr.txt
[2026-01-09 21:17:46] HITS file was successfully produced:
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas 46366042 Jan  9 21:15 shared/HITS.pool.root.1
[2026-01-09 21:17:46]  *** Contents of shared directory: ***
[2026-01-09 21:17:46] total 430180
[2026-01-09 21:17:46] -rw-r--r--. 2 boincer umatlas 391230903 Jan  9 19:23 ATLAS.root_0
[2026-01-09 21:17:46] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:23 start_atlas.sh
[2026-01-09 21:17:46] -rw-r--r--. 2 boincer umatlas    592614 Jan  9 19:23 input.tar.gz
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas  46366042 Jan  9 21:15 HITS.pool.root.1
[2026-01-09 21:17:46] -rw-------. 1 boincer umatlas   2283520 Jan  9 21:17 result.tar.gz
21:17:48 (562502): run_atlas exited; CPU time 12609.895010
21:17:48 (562502): called boinc_finish(0)

</stderr_txt>
]]>

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