Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:43:33 (3644117): wrapper (7.7.26015): starting
14:43:33 (3644117): wrapper: running run_atlas (--nthreads 2)
[2026-01-10 14:43:33] Arguments: --nthreads 2
[2026-01-10 14:43:33] Threads: 2
[2026-01-10 14:43:33] Checking for CVMFS
[2026-01-10 14:43:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 14:43:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 14:43:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 14:43:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 14:43:33] 2.9.2.0 3074018 3225 64176 154981 0 56 29840280 36864001 0 130560 0 1509380 99.985 118959 3034 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 14:43:33] CVMFS is ok
[2026-01-10 14:43:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 14:43:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 14:43:33] Further information can be found at the LHC@home message board.
[2026-01-10 14:43:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 14:43:33] Checking for apptainer binary...
[2026-01-10 14:43:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 14:43:33] Running /usr/bin/apptainer --version
[2026-01-10 14:43:33] apptainer version 1.4.1-1.1
[2026-01-10 14:43:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 14:43:33] atlasA229
[2026-01-10 14:43:33] apptainer works
[2026-01-10 14:43:33] Set ATHENA_PROC_NUMBER=2
[2026-01-10 14:43:33] Set ATHENA_CORE_NUMBER=2
[2026-01-10 14:43:33] Starting ATLAS job with PandaID=6964539302
[2026-01-10 14:43:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 15:36:58]  *** The last 200 lines of the pilot log: ***
[2026-01-10 15:36:58] 2026-01-10 14:36:22,997 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 15:36:58] 2026-01-10 14:36:22,997 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 15:36:58] 2026-01-10 14:36:22,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 15:36:58] 2026-01-10 14:36:22,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 15:36:58] 2026-01-10 14:36:22,997 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 15:36:58] 2026-01-10 14:36:22,998 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 15:36:58] 2026-01-10 14:36:22,998 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 15:36:58] 2026-01-10 14:36:22,998 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 15:36:58] 2026-01-10 14:36:22,998 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 15:36:58] 2026-01-10 14:36:22,998 | INFO     | job 6964539302 has completed (purged errors)
[2026-01-10 15:36:58] 2026-01-10 14:36:22,998 | INFO     | overall cleanup function is called
[2026-01-10 15:36:58] 2026-01-10 14:36:24,005 | INFO     | --- collectZombieJob: --- 10, [3654244]
[2026-01-10 15:36:58] 2026-01-10 14:36:24,005 | INFO     | zombie collector waiting for pid 3654244
[2026-01-10 15:36:58] 2026-01-10 14:36:24,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 15:36:58] 2026-01-10 14:36:24,005 | INFO     | collected zombie processes
[2026-01-10 15:36:58] 2026-01-10 14:36:24,005 | INFO     | will attempt to kill all subprocesses of pid=3654244
[2026-01-10 15:36:58] 2026-01-10 14:36:24,045 | INFO     | process IDs to be killed: [3654244] (in reverse order)
[2026-01-10 15:36:58] 2026-01-10 14:36:24,066 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 15:36:58] 2026-01-10 14:36:24,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 15:36:58] 2026-01-10 14:36:24,067 | INFO     | did not find any defunct processes belonging to 3654244
[2026-01-10 15:36:58] 2026-01-10 14:36:24,067 | INFO     | did not find any defunct processes belonging to 3654244
[2026-01-10 15:36:58] 2026-01-10 14:36:24,067 | INFO     | ready for new job
[2026-01-10 15:36:58] 2026-01-10 14:36:24,067 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 15:36:58] 2026-01-10 14:36:24,068 | INFO     | ***************************************
[2026-01-10 15:36:58] 2026-01-10 14:36:24,068 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 15:36:58] 2026-01-10 14:36:24,068 | INFO     | ***************************************
[2026-01-10 15:36:58] 2026-01-10 14:36:24,068 | INFO     | 
[2026-01-10 15:36:58] 2026-01-10 14:36:24,068 | INFO     | architecture information:
[2026-01-10 15:36:58] 2026-01-10 14:36:24,068 | INFO     | executing command: cat /etc/os-release
[2026-01-10 15:36:58] 2026-01-10 14:36:24,078 | INFO     | cat /etc/os-release:
[2026-01-10 15:36:58] NAME="CentOS Linux"
[2026-01-10 15:36:58] VERSION="7 (Core)"
[2026-01-10 15:36:58] ID="centos"
[2026-01-10 15:36:58] ID_LIKE="rhel fedora"
[2026-01-10 15:36:58] VERSION_ID="7"
[2026-01-10 15:36:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 15:36:58] ANSI_COLOR="0;31"
[2026-01-10 15:36:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 15:36:58] HOME_URL="https://www.centos.org/"
[2026-01-10 15:36:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 15:36:58] 
[2026-01-10 15:36:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 15:36:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 15:36:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 15:36:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 15:36:58] 
[2026-01-10 15:36:58] 2026-01-10 14:36:24,078 | INFO     | ***************************************
[2026-01-10 15:36:58] 2026-01-10 14:36:24,581 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 15:36:58] 2026-01-10 14:36:24,594 | INFO     | sufficient remaining disk space (331527225344 B)
[2026-01-10 15:36:58] 2026-01-10 14:36:24,594 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 15:36:58] 2026-01-10 14:36:24,594 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 15:36:58] 2026-01-10 14:36:24,594 | INFO     | update_server=False
[2026-01-10 15:36:58] 2026-01-10 14:36:24,594 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 15:36:58] 2026-01-10 14:36:24,732 | INFO     | all data control threads have been joined
[2026-01-10 15:36:58] 2026-01-10 14:36:24,803 | INFO     | all payload control threads have been joined
[2026-01-10 15:36:58] 2026-01-10 14:36:24,841 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 15:36:58] 2026-01-10 14:36:24,842 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 15:36:58] 2026-01-10 14:36:24,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 15:36:58] 2026-01-10 14:36:24,842 | INFO     | will abort loop
[2026-01-10 15:36:58] 2026-01-10 14:36:24,936 | INFO     | all job control threads have been joined
[2026-01-10 15:36:58] 2026-01-10 14:36:25,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 15:36:58] 2026-01-10 14:36:25,600 | INFO     | [job] retrieve thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:25,738 | INFO     | [data] control thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:25,809 | INFO     | [payload] control thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:25,848 | INFO     | [job] job monitor thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:25,942 | INFO     | [job] control thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:26,087 | INFO     | [data] copytool_in thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:26,289 | INFO     | [payload] failed_post thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:26,762 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:26,786 | INFO     | [payload] validate_post thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:27,030 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:27,060 | INFO     | [job] validate thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:27,100 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:27,173 | INFO     | [data] copytool_out thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:27,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 15:36:58] 2026-01-10 14:36:27,644 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 15:36:58] 2026-01-10 14:36:28,604 | INFO     | [job] queue monitor thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:31,651 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:35,561 | INFO     | job.realtimelogging is not enabled
[2026-01-10 15:36:58] 2026-01-10 14:36:36,565 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 15:36:58] 2026-01-10 14:36:51,353 | INFO     | [monitor] cgroup control has ended
[2026-01-10 15:36:58] 2026-01-10 14:36:53,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140672880957248)>', '<ExcThread(monitor, started 140672608737024)>']
[2026-01-10 15:36:58] 2026-01-10 14:36:55,254 | INFO     | PID=3647824 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 15:36:58] 2026-01-10 14:36:55,254 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 15:36:58] 2026-01-10 14:36:55,255 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 15:36:58] 2026-01-10 14:36:55,255 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 15:36:58] 2026-01-10 14:36:55,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 15:36:58] 2026-01-10 14:36:55,255 | INFO     | [monitor] control thread has ended
[2026-01-10 15:36:58] 2026-01-10 14:36:58,198 | INFO     | all workflow threads have been joined
[2026-01-10 15:36:58] 2026-01-10 14:36:58,199 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 15:36:58] 2026-01-10 14:36:58,199 | INFO     | traces error code: 0
[2026-01-10 15:36:58] 2026-01-10 14:36:58,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 15:36:58] 2026-01-10 14:36:58,242 [wrapper] ==== pilot stdout END ====
[2026-01-10 15:36:58] 2026-01-10 14:36:58,245 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 15:36:58] 2026-01-10 14:36:58,247 [wrapper] pilotpid: 3647824
[2026-01-10 15:36:58] 2026-01-10 14:36:58,249 [wrapper] Pilot exit status: 0
[2026-01-10 15:36:58] 2026-01-10 14:36:58,255 [wrapper] pandaids: 6964539302
[2026-01-10 15:36:58] 2026-01-10 14:36:58,268 [wrapper] cleanup supervisor_pilot 3663456 3647825
[2026-01-10 15:36:58] 2026-01-10 14:36:58,270 [wrapper] Test setup, not cleaning
[2026-01-10 15:36:58] 2026-01-10 14:36:58,273 [wrapper] apfmon messages muted
[2026-01-10 15:36:58] 2026-01-10 14:36:58,275 [wrapper] ==== wrapper stdout END ====
[2026-01-10 15:36:58] 2026-01-10 14:36:58,277 [wrapper] ==== wrapper stderr END ====
[2026-01-10 15:36:58]  *** Error codes and diagnostics ***
[2026-01-10 15:36:58]     "exeErrorCode": 0,
[2026-01-10 15:36:58]     "exeErrorDiag": "",
[2026-01-10 15:36:58]     "pilotErrorCode": 0,
[2026-01-10 15:36:58]     "pilotErrorDiag": "",
[2026-01-10 15:36:58]  *** Listing of results directory ***
[2026-01-10 15:36:58] total 431212
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc    579449 Jan  9 16:55 pilot3.tar.gz
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc      5112 Jan  9 16:59 queuedata.json
[2026-01-10 15:36:58] -rwx------ 1 boinc boinc     36322 Jan  9 17:00 runpilot2-wrapper.sh
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc       100 Jan 10 14:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 15:36:58] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 14:43 run_atlas
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc       105 Jan 10 14:43 job.xml
[2026-01-10 15:36:58] -rw-r--r-- 2 boinc boinc 392637332 Jan 10 14:43 EVNT.47962006._000038.pool.root.1
[2026-01-10 15:36:58] -rw-r--r-- 2 boinc boinc    592605 Jan 10 14:43 input.tar.gz
[2026-01-10 15:36:58] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:43 start_atlas.sh
[2026-01-10 15:36:58] drwxrwx--x 2 boinc boinc      4096 Jan 10 14:43 shared
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:43 boinc_setup_complete
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc      6207 Jan 10 14:43 init_data.xml
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:43 boinc_lockfile
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc      2889 Jan 10 14:43 pandaJob.out
[2026-01-10 15:36:58] -rw------- 1 boinc boinc    989556 Jan 10 14:43 agis_schedconf.cvmfs.json
[2026-01-10 15:36:58] -rw------- 1 boinc boinc   1516240 Jan 10 14:43 agis_ddmendpoints.agis.ALL.json
[2026-01-10 15:36:58] drwx------ 5 boinc boinc      4096 Jan 10 14:43 pilot3
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc       528 Jan 10 15:33 boinc_task_state.xml
[2026-01-10 15:36:58] -rw------- 1 boinc boinc        95 Jan 10 15:36 pilot_heartbeat.json
[2026-01-10 15:36:58] -rw------- 1 boinc boinc  42988515 Jan 10 15:36 HITS.47962010._001866.pool.root.1
[2026-01-10 15:36:58] -rw------- 1 boinc boinc      1007 Jan 10 15:36 memory_monitor_summary.json
[2026-01-10 15:36:58] -rw------- 1 boinc boinc    525893 Jan 10 15:36 log.47962010._001866.job.log.tgz.1
[2026-01-10 15:36:58] -rw------- 1 boinc boinc      8513 Jan 10 15:36 heartbeat.json
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc      8192 Jan 10 15:36 boinc_mmap_file
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc        26 Jan 10 15:36 wrapper_checkpoint.txt
[2026-01-10 15:36:58] -rw------- 1 boinc boinc      5010 Jan 10 15:36 pilotlog.txt
[2026-01-10 15:36:58] -rw------- 1 boinc boinc    490514 Jan 10 15:36 log.47962010._001866.job.log.1
[2026-01-10 15:36:58] -rw------- 1 boinc boinc       353 Jan 10 15:36 output.list
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc       620 Jan 10 15:36 runtime_log
[2026-01-10 15:36:58] -rw------- 1 boinc boinc   1034240 Jan 10 15:36 result.tar.gz
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc      8912 Jan 10 15:36 runtime_log.err
[2026-01-10 15:36:58] -rw------- 1 boinc boinc       660 Jan 10 15:36 Ux3LDmI5Ty8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIfmKDm7eEkNm.diag
[2026-01-10 15:36:58] -rw-r--r-- 1 boinc boinc     12052 Jan 10 15:36 stderr.txt
[2026-01-10 15:36:58] HITS file was successfully produced:
[2026-01-10 15:36:58] -rw------- 1 boinc boinc 42988515 Jan 10 15:36 shared/HITS.pool.root.1
[2026-01-10 15:36:58]  *** Contents of shared directory: ***
[2026-01-10 15:36:58] total 427032
[2026-01-10 15:36:58] -rw-r--r-- 2 boinc boinc 392637332 Jan 10 14:43 ATLAS.root_0
[2026-01-10 15:36:58] -rw-r--r-- 2 boinc boinc    592605 Jan 10 14:43 input.tar.gz
[2026-01-10 15:36:58] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:43 start_atlas.sh
[2026-01-10 15:36:58] -rw------- 1 boinc boinc  42988515 Jan 10 15:36 HITS.pool.root.1
[2026-01-10 15:36:58] -rw------- 1 boinc boinc   1034240 Jan 10 15:36 result.tar.gz
15:37:00 (3644117): run_atlas exited; CPU time 5300.153653
15:37:00 (3644117): called boinc_finish(0)

</stderr_txt>
]]>

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