Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
15:08:18 (607928): wrapper (7.7.26015): starting
15:08:18 (607928): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 15:08:18] Arguments: --nthreads 12
[2026-01-10 15:08:18] Threads: 12
[2026-01-10 15:08:18] Checking for CVMFS
[2026-01-10 15:08:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 15:08:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 15:08:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 15:08:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 15:08:18] 2.12.7.0 5106 602 65120 154990 1 97 3233886 4194304 1955 130560 10 1321489 99.973 23175 212 http://s1fnal-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-01-10 15:08:18] CVMFS is ok
[2026-01-10 15:08:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 15:08:18] Checking for apptainer binary...
[2026-01-10 15:08:18] apptainer is not installed, using version from CVMFS
[2026-01-10 15:08:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 15:08:18] Trebeth
[2026-01-10 15:08:18] apptainer works
[2026-01-10 15:08:18] Set ATHENA_PROC_NUMBER=12
[2026-01-10 15:08:18] Set ATHENA_CORE_NUMBER=12
[2026-01-10 15:08:18] Starting ATLAS job with PandaID=6964539081
[2026-01-10 15:08:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 16:41:57]  *** The last 200 lines of the pilot log: ***
[2026-01-10 16:41:57]  lfn=log.47898826._039965.job.log.tgz.1
[2026-01-10 16:41:57]  mtime=0
[2026-01-10 16:41:57]  protocol_id=None
[2026-01-10 16:41:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 16:41:57]  replicas=None
[2026-01-10 16:41:57]  scope=mc23_13p6TeV
[2026-01-10 16:41:57]  status=None
[2026-01-10 16:41:57]  status_code=0
[2026-01-10 16:41:57]  storage_token=
[2026-01-10 16:41:57]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6964539081/log.47898826._039965.job.log.tgz.1
[2026-01-10 16:41:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/75/log.47898826._039965.job.log.tgz.1
[2026-01-10 16:41:57]  workdir=None
[2026-01-10 16:41:57] ]
[2026-01-10 16:41:57] 2026-01-10 21:41:17,820 | INFO     | transferring file log.47898826._039965.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6964539081/log.47898826._039965.job.log.tgz.1 to /var/lib/boinc
[2026-01-10 16:41:57] 2026-01-10 21:41:17,821 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6964539081/log.47898826._039965.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.478988
[2026-01-10 16:41:57] 2026-01-10 21:41:17,836 | INFO     | adding to output.list: log.47898826._039965.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/75/log.47898826._039965.job.log.tg
[2026-01-10 16:41:57] 2026-01-10 21:41:17,837 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 16:41:57] 2026-01-10 21:41:17,837 | INFO     | summary of transferred files:
[2026-01-10 16:41:57] 2026-01-10 21:41:17,837 | INFO     |  -- lfn=log.47898826._039965.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 16:41:57] 2026-01-10 21:41:17,837 | INFO     | stage-out finished correctly
[2026-01-10 16:41:57] 2026-01-10 21:41:17,920 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 16:41:57] 2026-01-10 21:41:17,952 | INFO     | time since job start (5554s) is within the limit (349056.0s)
[2026-01-10 16:41:57] 2026-01-10 21:41:19,014 | INFO     | monitor loop #414: job 0:6964539081 is in state 'finished'
[2026-01-10 16:41:57] 2026-01-10 21:41:19,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:41:57] 2026-01-10 21:41:19,967 | INFO     | time since job start (5556s) is within the limit (349056.0s)
[2026-01-10 16:41:57] 2026-01-10 21:41:20,193 | INFO     | job 6964539081 has state=finished
[2026-01-10 16:41:57] 2026-01-10 21:41:20,194 | INFO     | preparing for final server update for job 6964539081 in state='finished'
[2026-01-10 16:41:57] 2026-01-10 21:41:20,194 | INFO     | this job has now completed (state=finished)
[2026-01-10 16:41:57] 2026-01-10 21:41:20,194 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 16:41:57] 2026-01-10 21:41:20,195 | INFO     | log transfer has been attempted: DONE
[2026-01-10 16:41:57] 2026-01-10 21:41:20,195 | INFO     | job 6964539081 has finished - writing final server update
[2026-01-10 16:41:57] 2026-01-10 21:41:20,195 | INFO     | total number of processed events: 400 (read)
[2026-01-10 16:41:57] 2026-01-10 21:41:20,196 | INFO     | executing command: lscpu
[2026-01-10 16:41:57] 2026-01-10 21:41:20,252 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 16:41:57] 2026-01-10 21:41:21,518 | INFO     | monitor loop #415: job 0:6964539081 is in state 'finished'
[2026-01-10 16:41:57] 2026-01-10 21:41:21,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:41:57] 2026-01-10 21:41:21,971 | INFO     | time since job start (5558s) is within the limit (349056.0s)
[2026-01-10 16:41:57] 2026-01-10 21:41:23,096 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 16:41:57] 2026-01-10 21:41:23,105 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3012.1124285714277
[2026-01-10 16:41:57] 2026-01-10 21:41:23,115 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6964539081/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 16:41:57] 2026-01-10 21:41:23,115 | INFO     | extracted standard info from prmon json
[2026-01-10 16:41:57] 2026-01-10 21:41:23,115 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 16:41:57] 2026-01-10 21:41:23,116 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 16:41:57] 2026-01-10 21:41:23,116 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 16:41:57] 2026-01-10 21:41:23,116 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 16:41:57] 2026-01-10 21:41:23,118 | INFO     | fitting pss+swap vs Time
[2026-01-10 16:41:57] 2026-01-10 21:41:23,118 | INFO     | sum of square deviations: 183761585.0
[2026-01-10 16:41:57] 2026-01-10 21:41:23,119 | INFO     | sum of deviations: 217118855.50000012
[2026-01-10 16:41:57] 2026-01-10 21:41:23,119 | INFO     | mean x: 1768078581.5
[2026-01-10 16:41:57] 2026-01-10 21:41:23,119 | INFO     | mean y: 2717469.488095238
[2026-01-10 16:41:57] 2026-01-10 21:41:23,119 | INFO     | intersect: -2086311083.7285285
[2026-01-10 16:41:57] 2026-01-10 21:41:23,119 | INFO     | chi2: 0.08981710488181285
[2026-01-10 16:41:57] 2026-01-10 21:41:23,120 | INFO     | current memory leak: 1.18 B/s (using 84 data points, chi2=0.09)
[2026-01-10 16:41:57] 2026-01-10 21:41:23,120 | INFO     | could have reported an average CPU frequency of 3028 MHz (7 samples)
[2026-01-10 16:41:57] 2026-01-10 21:41:23,120 | INFO     | ..............................
[2026-01-10 16:41:57] 2026-01-10 21:41:23,120 | INFO     | . Timing measurements:
[2026-01-10 16:41:57] 2026-01-10 21:41:23,120 | INFO     | . get job = 0 s
[2026-01-10 16:41:57] 2026-01-10 21:41:23,120 | INFO     | . initial setup = 18 s
[2026-01-10 16:41:57] 2026-01-10 21:41:23,121 | INFO     | . payload setup = 4 s
[2026-01-10 16:41:57] 2026-01-10 21:41:23,121 | INFO     | . stage-in = 0 s
[2026-01-10 16:41:57] 2026-01-10 21:41:23,121 | INFO     | . payload execution = 5530 s
[2026-01-10 16:41:57] 2026-01-10 21:41:23,121 | INFO     | . stage-out = 0 s
[2026-01-10 16:41:57] 2026-01-10 21:41:23,121 | INFO     | . log creation = 0 s
[2026-01-10 16:41:57] 2026-01-10 21:41:23,121 | INFO     | ..............................
[2026-01-10 16:41:57] 2026-01-10 21:41:23,213 | INFO     | 
[2026-01-10 16:41:57] 2026-01-10 21:41:23,213 | INFO     | job summary report
[2026-01-10 16:41:57] 2026-01-10 21:41:23,213 | INFO     | --------------------------------------------------
[2026-01-10 16:41:57] 2026-01-10 21:41:23,213 | INFO     | PanDA job id: 6964539081
[2026-01-10 16:41:57] 2026-01-10 21:41:23,213 | INFO     | task id: 47898826
[2026-01-10 16:41:57] 2026-01-10 21:41:23,213 | INFO     | errors: (none)
[2026-01-10 16:41:57] 2026-01-10 21:41:23,213 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 16:41:57] 2026-01-10 21:41:23,213 | INFO     | pilot state: finished 
[2026-01-10 16:41:57] 2026-01-10 21:41:23,214 | INFO     | transexitcode: 0
[2026-01-10 16:41:57] 2026-01-10 21:41:23,214 | INFO     | exeerrorcode: 0
[2026-01-10 16:41:57] 2026-01-10 21:41:23,214 | INFO     | exeerrordiag: 
[2026-01-10 16:41:57] 2026-01-10 21:41:23,214 | INFO     | exitcode: 0
[2026-01-10 16:41:57] 2026-01-10 21:41:23,214 | INFO     | exitmsg: OK
[2026-01-10 16:41:57] 2026-01-10 21:41:23,214 | INFO     | cpuconsumptiontime: 59334 s
[2026-01-10 16:41:57] 2026-01-10 21:41:23,214 | INFO     | nevents: 400
[2026-01-10 16:41:57] 2026-01-10 21:41:23,214 | INFO     | neventsw: 0
[2026-01-10 16:41:57] 2026-01-10 21:41:23,214 | INFO     | pid: 618971
[2026-01-10 16:41:57] 2026-01-10 21:41:23,214 | INFO     | pgrp: 618971
[2026-01-10 16:41:57] 2026-01-10 21:41:23,215 | INFO     | corecount: 12
[2026-01-10 16:41:57] 2026-01-10 21:41:23,215 | INFO     | event service: False
[2026-01-10 16:41:57] 2026-01-10 21:41:23,215 | INFO     | sizes: {0: 2283748, 1: 2283947, 4: 2284209, 11: 2284237, 5538: 2310880, 5540: 2320076, 5546: 2320214}
[2026-01-10 16:41:57] 2026-01-10 21:41:23,215 | INFO     | --------------------------------------------------
[2026-01-10 16:41:57] 2026-01-10 21:41:23,215 | INFO     | 
[2026-01-10 16:41:57] 2026-01-10 21:41:23,215 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-01-10 16:41:57] 2026-01-10 21:41:23,233 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,234 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,234 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,234 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,234 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,234 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,234 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,234 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,234 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,235 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,235 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,235 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,235 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,235 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,235 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,235 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,235 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 16:41:57] 2026-01-10 21:41:23,235 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,236 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 16:41:57] 2026-01-10 21:41:23,236 | INFO     | job 6964539081 has completed (purged errors)
[2026-01-10 16:41:57] 2026-01-10 21:41:23,236 | INFO     | overall cleanup function is called
[2026-01-10 16:41:57] 2026-01-10 21:41:24,244 | INFO     | --- collectZombieJob: --- 10, [618971]
[2026-01-10 16:41:57] 2026-01-10 21:41:24,244 | INFO     | zombie collector waiting for pid 618971
[2026-01-10 16:41:57] 2026-01-10 21:41:24,244 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 16:41:57] 2026-01-10 21:41:24,244 | INFO     | collected zombie processes
[2026-01-10 16:41:57] 2026-01-10 21:41:24,245 | INFO     | will attempt to kill all subprocesses of pid=618971
[2026-01-10 16:41:57] 2026-01-10 21:41:24,490 | INFO     | process IDs to be killed: [618971] (in reverse order)
[2026-01-10 16:41:57] 2026-01-10 21:41:24,564 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 16:41:57] 2026-01-10 21:41:24,564 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 16:41:57] 2026-01-10 21:41:24,570 | INFO     | did not find any defunct processes belonging to 618971
[2026-01-10 16:41:57] 2026-01-10 21:41:24,576 | INFO     | did not find any defunct processes belonging to 618971
[2026-01-10 16:41:57] 2026-01-10 21:41:24,576 | INFO     | ready for new job
[2026-01-10 16:41:57] 2026-01-10 21:41:24,576 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 16:41:57] 2026-01-10 21:41:24,577 | INFO     | ***************************************
[2026-01-10 16:41:57] 2026-01-10 21:41:24,578 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 16:41:57] 2026-01-10 21:41:24,578 | INFO     | ***************************************
[2026-01-10 16:41:57] 2026-01-10 21:41:24,578 | INFO     | 
[2026-01-10 16:41:57] 2026-01-10 21:41:24,598 | INFO     | architecture information:
[2026-01-10 16:41:57] 2026-01-10 21:41:24,598 | INFO     | executing command: cat /etc/os-release
[2026-01-10 16:41:57] 2026-01-10 21:41:24,609 | INFO     | cat /etc/os-release:
[2026-01-10 16:41:57] NAME="CentOS Linux"
[2026-01-10 16:41:57] VERSION="7 (Core)"
[2026-01-10 16:41:57] ID="centos"
[2026-01-10 16:41:57] ID_LIKE="rhel fedora"
[2026-01-10 16:41:57] VERSION_ID="7"
[2026-01-10 16:41:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 16:41:57] ANSI_COLOR="0;31"
[2026-01-10 16:41:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 16:41:57] HOME_URL="https://www.centos.org/"
[2026-01-10 16:41:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 16:41:57] 
[2026-01-10 16:41:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 16:41:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 16:41:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 16:41:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 16:41:57] 
[2026-01-10 16:41:57] 2026-01-10 21:41:24,610 | INFO     | ***************************************
[2026-01-10 16:41:57] 2026-01-10 21:41:25,111 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-01-10 16:41:57] 2026-01-10 21:41:25,125 | INFO     | sufficient remaining disk space (389604704256 B)
[2026-01-10 16:41:57] 2026-01-10 21:41:25,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 16:41:57] 2026-01-10 21:41:25,126 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 16:41:57] 2026-01-10 21:41:25,126 | INFO     | update_server=False
[2026-01-10 16:41:57] 2026-01-10 21:41:25,126 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 16:41:57] 2026-01-10 21:41:25,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:41:57] 2026-01-10 21:41:25,126 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:41:57] 2026-01-10 21:41:25,126 | INFO     | aborting loop
[2026-01-10 16:41:57] 2026-01-10 21:41:25,708 | INFO     | all data control threads have been joined
[2026-01-10 16:41:57] 2026-01-10 21:41:25,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 16:41:57] 2026-01-10 21:41:26,130 | INFO     | [job] queue monitor thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:26,131 | INFO     | [job] retrieve thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:26,132 | INFO     | [job] job monitor thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:26,262 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:26,307 | INFO     | all job control threads have been joined
[2026-01-10 16:41:57] 2026-01-10 21:41:26,324 | INFO     | [data] copytool_in thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:26,395 | INFO     | [payload] validate_post thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:26,530 | INFO     | all payload control threads have been joined
[2026-01-10 16:41:57] 2026-01-10 21:41:26,710 | INFO     | [data] control thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:26,910 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:27,202 | INFO     | [job] validate thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:27,313 | INFO     | [job] control thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:27,443 | INFO     | [payload] failed_post thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:27,534 | INFO     | [payload] control thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:27,582 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:27,934 | INFO     | [data] copytool_out thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:28,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 16:41:57] 2026-01-10 21:41:32,502 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:35,715 | INFO     | job.realtimelogging is not enabled
[2026-01-10 16:41:57] 2026-01-10 21:41:36,719 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 16:41:57] 2026-01-10 21:41:52,271 | INFO     | [monitor] cgroup control has ended
[2026-01-10 16:41:57] 2026-01-10 21:41:52,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140430345652032)>', '<ExcThread(monitor, started 140429769033472)>']
[2026-01-10 16:41:57] 2026-01-10 21:41:55,300 | INFO     | PID=611937 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 16:41:57] 2026-01-10 21:41:55,300 | INFO     | .. there are 3 such processes running
[2026-01-10 16:41:57] 2026-01-10 21:41:55,301 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 16:41:57] 2026-01-10 21:41:55,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 16:41:57] 2026-01-10 21:41:55,301 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 16:41:57] 2026-01-10 21:41:55,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 16:41:57] 2026-01-10 21:41:55,302 | INFO     | [monitor] control thread has ended
[2026-01-10 16:41:57] 2026-01-10 21:41:57,466 | INFO     | all workflow threads have been joined
[2026-01-10 16:41:57] 2026-01-10 21:41:57,467 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 16:41:57] 2026-01-10 21:41:57,467 | INFO     | traces error code: 0
[2026-01-10 16:41:57] 2026-01-10 21:41:57,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 16:41:57] 2026-01-10 21:41:57,576 [wrapper] ==== pilot stdout END ====
[2026-01-10 16:41:57] 2026-01-10 21:41:57,578 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 16:41:57] 2026-01-10 21:41:57,580 [wrapper] pilotpid: 611937
[2026-01-10 16:41:57] 2026-01-10 21:41:57,582 [wrapper] Pilot exit status: 0
[2026-01-10 16:41:57] 2026-01-10 21:41:57,589 [wrapper] pandaids: 6964539081
[2026-01-10 16:41:57] 2026-01-10 21:41:57,631 [wrapper] cleanup supervisor_pilot  680673 611938
[2026-01-10 16:41:57] 2026-01-10 21:41:57,633 [wrapper] Test setup, not cleaning
[2026-01-10 16:41:57] 2026-01-10 21:41:57,635 [wrapper] apfmon messages muted
[2026-01-10 16:41:57] 2026-01-10 21:41:57,637 [wrapper] ==== wrapper stdout END ====
[2026-01-10 16:41:57] 2026-01-10 21:41:57,638 [wrapper] ==== wrapper stderr END ====
[2026-01-10 16:41:57]  *** Error codes and diagnostics ***
[2026-01-10 16:41:57]     "exeErrorCode": 0,
[2026-01-10 16:41:57]     "exeErrorDiag": "",
[2026-01-10 16:41:57]     "pilotErrorCode": 0,
[2026-01-10 16:41:57]     "pilotErrorDiag": "",
[2026-01-10 16:41:57]  *** Listing of results directory ***
[2026-01-10 16:41:57] total 441912
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc      5112 Jan  9 10:55 queuedata.json
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc    579449 Jan  9 10:55 pilot3.tar.gz
[2026-01-10 16:41:57] -rwx------ 1 boinc boinc     36322 Jan  9 10:56 runpilot2-wrapper.sh
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc       100 Jan 10 15:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 16:41:57] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 15:08 run_atlas
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc       105 Jan 10 15:08 job.xml
[2026-01-10 16:41:57] -rw-r--r-- 2 boinc boinc 223851478 Jan 10 15:08 EVNT.47898824._000783.pool.root.1
[2026-01-10 16:41:57] -rw-r--r-- 2 boinc boinc     15847 Jan 10 15:08 start_atlas.sh
[2026-01-10 16:41:57] drwxrwx--x 2 boinc boinc      4096 Jan 10 15:08 shared
[2026-01-10 16:41:57] -rw-r--r-- 2 boinc boinc    592398 Jan 10 15:08 input.tar.gz
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc      7579 Jan 10 15:08 init_data.xml
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc         0 Jan 10 15:08 boinc_lockfile
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc      2515 Jan 10 15:08 pandaJob.out
[2026-01-10 16:41:57] -rw------- 1 boinc boinc        50 Jan 10 15:08 setup.sh.local
[2026-01-10 16:41:57] -rw------- 1 boinc boinc    989540 Jan 10 15:08 agis_schedconf.cvmfs.json
[2026-01-10 16:41:57] -rw------- 1 boinc boinc   1516240 Jan 10 15:08 agis_ddmendpoints.agis.ALL.json
[2026-01-10 16:41:57] drwx------ 5 boinc boinc      4096 Jan 10 15:08 pilot3
[2026-01-10 16:41:57] -rw------- 1 boinc boinc 222341285 Jan 10 16:40 HITS.47898826._039965.pool.root.1
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc       530 Jan 10 16:41 boinc_task_state.xml
[2026-01-10 16:41:57] -rw------- 1 boinc boinc      1022 Jan 10 16:41 memory_monitor_summary.json
[2026-01-10 16:41:57] -rw------- 1 boinc boinc    383668 Jan 10 16:41 log.47898826._039965.job.log.tgz.1
[2026-01-10 16:41:57] -rw------- 1 boinc boinc      7768 Jan 10 16:41 heartbeat.json
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc      8192 Jan 10 16:41 boinc_mmap_file
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc        27 Jan 10 16:41 wrapper_checkpoint.txt
[2026-01-10 16:41:57] -rw------- 1 boinc boinc        95 Jan 10 16:41 pilot_heartbeat.json
[2026-01-10 16:41:57] -rw------- 1 boinc boinc      4902 Jan 10 16:41 pilotlog.txt
[2026-01-10 16:41:57] -rw------- 1 boinc boinc    820630 Jan 10 16:41 log.47898826._039965.job.log.1
[2026-01-10 16:41:57] -rw------- 1 boinc boinc       357 Jan 10 16:41 output.list
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc       620 Jan 10 16:41 runtime_log
[2026-01-10 16:41:57] -rw------- 1 boinc boinc   1218560 Jan 10 16:41 result.tar.gz
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc      9404 Jan 10 16:41 runtime_log.err
[2026-01-10 16:41:57] -rw------- 1 boinc boinc       652 Jan 10 16:41 OvlKDmP1Ty8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgShKDm6jbDDo.diag
[2026-01-10 16:41:57] -rw-r--r-- 1 boinc boinc     21388 Jan 10 16:41 stderr.txt
[2026-01-10 16:41:57] HITS file was successfully produced:
[2026-01-10 16:41:57] -rw------- 1 boinc boinc 222341285 Jan 10 16:40 shared/HITS.pool.root.1
[2026-01-10 16:41:57]  *** Contents of shared directory: ***
[2026-01-10 16:41:57] total 437536
[2026-01-10 16:41:57] -rw-r--r-- 2 boinc boinc 223851478 Jan 10 15:08 ATLAS.root_0
[2026-01-10 16:41:57] -rw-r--r-- 2 boinc boinc     15847 Jan 10 15:08 start_atlas.sh
[2026-01-10 16:41:57] -rw-r--r-- 2 boinc boinc    592398 Jan 10 15:08 input.tar.gz
[2026-01-10 16:41:57] -rw------- 1 boinc boinc 222341285 Jan 10 16:40 HITS.pool.root.1
[2026-01-10 16:41:57] -rw------- 1 boinc boinc   1218560 Jan 10 16:41 result.tar.gz
16:41:59 (607928): run_atlas exited; CPU time 59464.080105
16:41:59 (607928): called boinc_finish(0)

</stderr_txt>
]]>

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