Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:49:23 (539509): wrapper (7.7.26015): starting
19:49:23 (539509): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 19:49:23] Arguments: --nthreads 9
[2026-01-09 19:49:23] Threads: 9
[2026-01-09 19:49:23] Checking for CVMFS
[2026-01-09 19:49:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:49:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:49:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:49:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:49:24] 2.13.3.0 11235 92456 209020 154962 1 105 28162082 32935937 19958 16776704 0 737040029 99.564 844252690 21682 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 19:49:24] CVMFS is ok
[2026-01-09 19:49:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:49:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:49:24] Further information can be found at the LHC@home message board.
[2026-01-09 19:49:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:49:24] Checking for apptainer binary...
[2026-01-09 19:49:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:49:24] Running /usr/bin/apptainer --version
[2026-01-09 19:49:24] apptainer version 1.4.5-2.el9
[2026-01-09 19:49:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:49:24] c7-2-37.aglt2.org
[2026-01-09 19:49:24] apptainer works
[2026-01-09 19:49:24] Set ATHENA_PROC_NUMBER=9
[2026-01-09 19:49:24] Set ATHENA_CORE_NUMBER=9
[2026-01-09 19:49:24] Starting ATLAS job with PandaID=6963161936
[2026-01-09 19:49:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 00:05:36]  *** The last 200 lines of the pilot log: ***
[2026-01-10 00:05:36] 2026-01-10 05:04:32,119 | INFO     | monitor loop #1010: job 0:6963161936 is in state 'finished'
[2026-01-10 00:05:36] 2026-01-10 05:04:32,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 00:05:36] 2026-01-10 05:04:32,932 | INFO     | time since job start (15268s) is within the limit (349056.0s)
[2026-01-10 00:05:36] 2026-01-10 05:04:34,624 | INFO     | monitor loop #1011: job 0:6963161936 is in state 'finished'
[2026-01-10 00:05:36] 2026-01-10 05:04:34,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 00:05:36] 2026-01-10 05:04:34,938 | INFO     | time since job start (15270s) is within the limit (349056.0s)
[2026-01-10 00:05:36] 2026-01-10 05:04:35,068 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 00:05:36] 2026-01-10 05:04:35,095 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3231.311406250002
[2026-01-10 00:05:36] 2026-01-10 05:04:35,155 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963161936/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 00:05:36] 2026-01-10 05:04:35,155 | INFO     | extracted standard info from prmon json
[2026-01-10 00:05:36] 2026-01-10 05:04:35,155 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 00:05:36] 2026-01-10 05:04:35,155 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 00:05:36] 2026-01-10 05:04:35,156 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 00:05:36] 2026-01-10 05:04:35,156 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 00:05:36] 2026-01-10 05:04:35,180 | INFO     | fitting pss+swap vs Time
[2026-01-10 00:05:36] 2026-01-10 05:04:35,182 | INFO     | sum of square deviations: 4787053324.996
[2026-01-10 00:05:36] 2026-01-10 05:04:35,183 | INFO     | sum of deviations: 46040118511.50604
[2026-01-10 00:05:36] 2026-01-10 05:04:35,183 | INFO     | mean x: 1768013870.0040162
[2026-01-10 00:05:36] 2026-01-10 05:04:35,183 | INFO     | mean y: 2524231.493975904
[2026-01-10 00:05:36] 2026-01-10 05:04:35,183 | INFO     | intersect: -17001583009.16212
[2026-01-10 00:05:36] 2026-01-10 05:04:35,184 | INFO     | chi2: 3.2240845295000233
[2026-01-10 00:05:36] 2026-01-10 05:04:35,184 | INFO     | sum of square deviations: 4504425074.995878
[2026-01-10 00:05:36] 2026-01-10 05:04:35,185 | INFO     | sum of deviations: 60594634701.08601
[2026-01-10 00:05:36] 2026-01-10 05:04:35,185 | INFO     | mean x: 1768013717.5040984
[2026-01-10 00:05:36] 2026-01-10 05:04:35,185 | INFO     | mean y: 2531944.4139344264
[2026-01-10 00:05:36] 2026-01-10 05:04:35,185 | INFO     | intersect: -23781223712.520367
[2026-01-10 00:05:36] 2026-01-10 05:04:35,206 | INFO     | chi2: 2.5489872976284365
[2026-01-10 00:05:36] 2026-01-10 05:04:35,206 | INFO     | current chi2=2.5489872976284365 (change=20.93919144161763 %)
[2026-01-10 00:05:36] 2026-01-10 05:04:35,206 | INFO     | right removable region: 243
[2026-01-10 00:05:36] 2026-01-10 05:04:35,207 | INFO     | sum of square deviations: 4504424464.995878
[2026-01-10 00:05:36] 2026-01-10 05:04:35,208 | INFO     | sum of deviations: -15976327044.913923
[2026-01-10 00:05:36] 2026-01-10 05:04:35,208 | INFO     | mean x: 1768014022.5040984
[2026-01-10 00:05:36] 2026-01-10 05:04:35,208 | INFO     | mean y: 2557562.4139344264
[2026-01-10 00:05:36] 2026-01-10 05:04:35,208 | INFO     | intersect: 6273363180.983705
[2026-01-10 00:05:36] 2026-01-10 05:04:35,208 | INFO     | chi2: 0.7861113455916677
[2026-01-10 00:05:36] 2026-01-10 05:04:35,208 | INFO     | current chi2=0.7861113455916677 (change=75.61753302685354 %)
[2026-01-10 00:05:36] 2026-01-10 05:04:35,209 | INFO     | sum of square deviations: 4233144654.995816
[2026-01-10 00:05:36] 2026-01-10 05:04:35,233 | INFO     | sum of deviations: -21521931667.71549
[2026-01-10 00:05:36] 2026-01-10 05:04:35,233 | INFO     | mean x: 1768014175.004184
[2026-01-10 00:05:36] 2026-01-10 05:04:35,234 | INFO     | mean y: 2560654.7154811714
[2026-01-10 00:05:36] 2026-01-10 05:04:35,234 | INFO     | intersect: 8991405441.081522
[2026-01-10 00:05:36] 2026-01-10 05:04:35,234 | INFO     | chi2: 0.7467376794563241
[2026-01-10 00:05:36] 2026-01-10 05:04:35,234 | INFO     | current chi2=0.7467376794563241 (change=5.008662749385587 %)
[2026-01-10 00:05:36] 2026-01-10 05:04:35,234 | INFO     | left removable region: 20
[2026-01-10 00:05:36] 2026-01-10 05:04:35,235 | INFO     | sum of square deviations: 3438620752.0
[2026-01-10 00:05:36] 2026-01-10 05:04:35,236 | INFO     | sum of deviations: 3843955870.0
[2026-01-10 00:05:36] 2026-01-10 05:04:35,236 | INFO     | mean x: 1768014297.0
[2026-01-10 00:05:36] 2026-01-10 05:04:35,236 | INFO     | mean y: 2563041.7578475336
[2026-01-10 00:05:36] 2026-01-10 05:04:35,236 | INFO     | intersect: -1973859897.94675
[2026-01-10 00:05:36] 2026-01-10 05:04:35,261 | INFO     | chi2: 0.015279514588012315
[2026-01-10 00:05:36] 2026-01-10 05:04:35,261 | INFO     | current memory leak: 1.12 B/s (using 223 data points, chi2=0.02)
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | could have reported an average CPU frequency of 3269 MHz (12 samples)
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | ..............................
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | . Timing measurements:
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | . get job = 0 s
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | . initial setup = 6 s
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | . payload setup = 35 s
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | . stage-in = 0 s
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | . payload execution = 15163 s
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | . stage-out = 3 s
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | . log creation = 0 s
[2026-01-10 00:05:36] 2026-01-10 05:04:35,262 | INFO     | ..............................
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | 
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | job summary report
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | --------------------------------------------------
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | PanDA job id: 6963161936
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | task id: 47898826
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | errors: (none)
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | pilot state: finished 
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | transexitcode: 0
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | exeerrorcode: 0
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | exeerrordiag: 
[2026-01-10 00:05:36] 2026-01-10 05:04:35,629 | INFO     | exitcode: 0
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | exitmsg: OK
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | cpuconsumptiontime: 47702 s
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | nevents: 400
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | neventsw: 0
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | pid: 555484
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | pgrp: 555484
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | corecount: 9
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | event service: False
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | sizes: {0: 2283744, 1: 2283828, 2: 2284027, 3: 2284027, 13: 2284055, 24: 2284111, 25: 2284529, 35: 2284557, 15203: 2315762, 15207: 2324760, 15210: 2324816, 15223: 
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | --------------------------------------------------
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | 
[2026-01-10 00:05:36] 2026-01-10 05:04:35,630 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 00:05:36] 2026-01-10 05:04:35,781 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,782 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,783 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,783 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 00:05:36] 2026-01-10 05:04:35,783 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,783 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 00:05:36] 2026-01-10 05:04:35,783 | INFO     | job 6963161936 has completed (purged errors)
[2026-01-10 00:05:36] 2026-01-10 05:04:35,783 | INFO     | overall cleanup function is called
[2026-01-10 00:05:36] 2026-01-10 05:04:36,799 | INFO     | --- collectZombieJob: --- 10, [555484]
[2026-01-10 00:05:36] 2026-01-10 05:04:36,799 | INFO     | zombie collector waiting for pid 555484
[2026-01-10 00:05:36] 2026-01-10 05:04:36,799 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 00:05:36] 2026-01-10 05:04:36,799 | INFO     | collected zombie processes
[2026-01-10 00:05:36] 2026-01-10 05:04:36,800 | INFO     | will attempt to kill all subprocesses of pid=555484
[2026-01-10 00:05:36] 2026-01-10 05:04:37,106 | INFO     | PID=543838 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 00:05:36] 2026-01-10 05:04:37,106 | INFO     | .. there are 16 such processes running
[2026-01-10 00:05:36] 2026-01-10 05:04:37,399 | INFO     | process IDs to be killed: [555484] (in reverse order)
[2026-01-10 00:05:36] 2026-01-10 05:04:37,596 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 00:05:36] 2026-01-10 05:04:37,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 00:05:36] 2026-01-10 05:04:37,635 | INFO     | did not find any defunct processes belonging to 555484
[2026-01-10 00:05:36] 2026-01-10 05:04:37,749 | INFO     | did not find any defunct processes belonging to 555484
[2026-01-10 00:05:36] 2026-01-10 05:04:37,750 | INFO     | ready for new job
[2026-01-10 00:05:36] 2026-01-10 05:04:37,750 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 00:05:36] 2026-01-10 05:04:37,777 | INFO     | ***************************************
[2026-01-10 00:05:36] 2026-01-10 05:04:37,777 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 00:05:36] 2026-01-10 05:04:37,777 | INFO     | ***************************************
[2026-01-10 00:05:36] 2026-01-10 05:04:37,777 | INFO     | 
[2026-01-10 00:05:36] 2026-01-10 05:04:37,786 | INFO     | architecture information:
[2026-01-10 00:05:36] 2026-01-10 05:04:37,807 | INFO     | executing command: cat /etc/os-release
[2026-01-10 00:05:36] 2026-01-10 05:04:37,859 | INFO     | cat /etc/os-release:
[2026-01-10 00:05:36] NAME="CentOS Linux"
[2026-01-10 00:05:36] VERSION="7 (Core)"
[2026-01-10 00:05:36] ID="centos"
[2026-01-10 00:05:36] ID_LIKE="rhel fedora"
[2026-01-10 00:05:36] VERSION_ID="7"
[2026-01-10 00:05:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 00:05:36] ANSI_COLOR="0;31"
[2026-01-10 00:05:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 00:05:36] HOME_URL="https://www.centos.org/"
[2026-01-10 00:05:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 00:05:36] 
[2026-01-10 00:05:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 00:05:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 00:05:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 00:05:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 00:05:36] 
[2026-01-10 00:05:36] 2026-01-10 05:04:37,860 | INFO     | ***************************************
[2026-01-10 00:05:36] 2026-01-10 05:04:38,363 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 00:05:36] 2026-01-10 05:04:38,490 | INFO     | sufficient remaining disk space (74152148992 B)
[2026-01-10 00:05:36] 2026-01-10 05:04:38,491 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 00:05:36] 2026-01-10 05:04:38,491 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 00:05:36] 2026-01-10 05:04:38,491 | INFO     | update_server=False
[2026-01-10 00:05:36] 2026-01-10 05:04:38,491 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 00:05:36] 2026-01-10 05:04:38,492 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:05:36] 2026-01-10 05:04:38,492 | INFO     | aborting loop
[2026-01-10 00:05:36] 2026-01-10 05:04:39,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 00:05:36] 2026-01-10 05:04:39,455 | INFO     | all data control threads have been joined
[2026-01-10 00:05:36] 2026-01-10 05:04:39,497 | INFO     | [job] retrieve thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:39,498 | INFO     | [job] job monitor thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:39,520 | INFO     | all job control threads have been joined
[2026-01-10 00:05:36] 2026-01-10 05:04:39,572 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:39,694 | INFO     | [data] copytool_in thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:39,710 | INFO     | [job] validate thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:39,890 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:39,904 | INFO     | all payload control threads have been joined
[2026-01-10 00:05:36] 2026-01-10 05:04:40,078 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:40,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:05:36] 2026-01-10 05:04:40,461 | INFO     | [data] control thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:40,527 | INFO     | [job] control thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:40,566 | INFO     | [payload] validate_post thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:40,569 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:40,642 | INFO     | [payload] failed_post thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:40,909 | INFO     | [payload] control thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:41,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 00:05:36] 2026-01-10 05:04:41,355 | INFO     | [data] copytool_out thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:41,451 | INFO     | [job] queue monitor thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:45,365 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 00:05:36] 2026-01-10 05:04:56,107 [wrapper] supervise_pilot (15 min periods counter: 18)
[2026-01-10 00:05:36] 2026-01-10 05:05:10,266 | INFO     | PID=543838 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 00:05:36] 2026-01-10 05:05:10,266 | INFO     | .. there are 16 such processes running
[2026-01-10 00:05:36] 2026-01-10 05:05:10,266 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 00:05:36] 2026-01-10 05:05:10,266 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 00:05:36] 2026-01-10 05:05:10,266 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 00:05:36] 2026-01-10 05:05:29,927 | INFO     | [monitor] cgroup control has ended
[2026-01-10 00:05:36] 2026-01-10 05:05:30,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139957868238656)>', '<ExcThread(monitor, started 139957515564800)>']
[2026-01-10 00:05:36] 2026-01-10 05:05:31,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 00:05:36] 2026-01-10 05:05:31,394 | INFO     | [monitor] control thread has ended
[2026-01-10 00:05:36] 2026-01-10 05:05:35,448 | INFO     | all workflow threads have been joined
[2026-01-10 00:05:36] 2026-01-10 05:05:35,448 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 00:05:36] 2026-01-10 05:05:35,448 | INFO     | traces error code: 0
[2026-01-10 00:05:36] 2026-01-10 05:05:35,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 00:05:36] 2026-01-10 05:05:36,036 [wrapper] ==== pilot stdout END ====
[2026-01-10 00:05:36] 2026-01-10 05:05:36,059 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 00:05:36] 2026-01-10 05:05:36,072 [wrapper] pilotpid: 543838
[2026-01-10 00:05:36] 2026-01-10 05:05:36,074 [wrapper] Pilot exit status: 0
[2026-01-10 00:05:36] 2026-01-10 05:05:36,084 [wrapper] pandaids: 6963161936
[2026-01-10 00:05:36] 2026-01-10 05:05:36,192 [wrapper] cleanup supervisor_pilot 1715369 543839
[2026-01-10 00:05:36] 2026-01-10 05:05:36,207 [wrapper] Test setup, not cleaning
[2026-01-10 00:05:36] 2026-01-10 05:05:36,220 [wrapper] apfmon messages muted
[2026-01-10 00:05:36] 2026-01-10 05:05:36,249 [wrapper] ==== wrapper stdout END ====
[2026-01-10 00:05:36] 2026-01-10 05:05:36,253 [wrapper] ==== wrapper stderr END ====
[2026-01-10 00:05:36]  *** Error codes and diagnostics ***
[2026-01-10 00:05:36]     "exeErrorCode": 0,
[2026-01-10 00:05:36]     "exeErrorDiag": "",
[2026-01-10 00:05:36]     "pilotErrorCode": 0,
[2026-01-10 00:05:36]     "pilotErrorDiag": "",
[2026-01-10 00:05:36]  *** Listing of results directory ***
[2026-01-10 00:05:36] total 450028
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-10 00:05:36] -rwx------. 1 boincer umatlas     36322 Jan  8 16:49 runpilot2-wrapper.sh
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:51 queuedata.json
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas       100 Jan  9 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 00:05:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 19:49 run_atlas
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas       105 Jan  9 19:49 job.xml
[2026-01-10 00:05:36] -rw-r--r--. 2 boincer umatlas 224196773 Jan  9 19:49 EVNT.47898824._001232.pool.root.1
[2026-01-10 00:05:36] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:49 start_atlas.sh
[2026-01-10 00:05:36] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 19:49 shared
[2026-01-10 00:05:36] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 19:49 input.tar.gz
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas         0 Jan  9 19:49 boinc_lockfile
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 19:49 pandaJob.out
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas        57 Jan  9 19:49 setup.sh.local
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas    989374 Jan  9 19:49 agis_schedconf.cvmfs.json
[2026-01-10 00:05:36] drwx------. 5 boincer umatlas      4096 Jan  9 19:50 pilot3
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas      6946 Jan 10 00:03 init_data.xml
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas 227669915 Jan 10 00:03 HITS.47898826._033593.pool.root.1
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas       531 Jan 10 00:03 boinc_task_state.xml
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas      1042 Jan 10 00:04 memory_monitor_summary.json
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas   1516240 Jan 10 00:04 agis_ddmendpoints.agis.ALL.json
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas    497533 Jan 10 00:04 log.47898826._033593.job.log.tgz.1
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas        95 Jan 10 00:04 pilot_heartbeat.json
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas      7792 Jan 10 00:04 heartbeat.json
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas        28 Jan 10 00:05 wrapper_checkpoint.txt
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 00:05 boinc_mmap_file
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas      4823 Jan 10 00:05 pilotlog.txt
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas   2027239 Jan 10 00:05 log.47898826._033593.job.log.1
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas       357 Jan 10 00:05 output.list
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas       620 Jan 10 00:05 runtime_log
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas   2539520 Jan 10 00:05 result.tar.gz
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas      9338 Jan 10 00:05 runtime_log.err
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas       657 Jan 10 00:05 mhgLDml3Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxQgKDmJ48njn.diag
[2026-01-10 00:05:36] -rw-r--r--. 1 boincer umatlas     21469 Jan 10 00:05 stderr.txt
[2026-01-10 00:05:36] HITS file was successfully produced:
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas 227669915 Jan 10 00:03 shared/HITS.pool.root.1
[2026-01-10 00:05:36]  *** Contents of shared directory: ***
[2026-01-10 00:05:36] total 444364
[2026-01-10 00:05:36] -rw-r--r--. 2 boincer umatlas 224196773 Jan  9 19:49 ATLAS.root_0
[2026-01-10 00:05:36] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:49 start_atlas.sh
[2026-01-10 00:05:36] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 19:49 input.tar.gz
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas 227669915 Jan 10 00:03 HITS.pool.root.1
[2026-01-10 00:05:36] -rw-------. 1 boincer umatlas   2539520 Jan 10 00:05 result.tar.gz
00:05:38 (539509): run_atlas exited; CPU time 48186.012843
00:05:38 (539509): called boinc_finish(0)

</stderr_txt>
]]>

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