Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:22:21 (5946): wrapper (7.7.26015): starting
18:22:21 (5946): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 18:22:21] Arguments: --nthreads 8
[2026-01-09 18:22:21] Threads: 8
[2026-01-09 18:22:21] Checking for CVMFS
[2026-01-09 18:22:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:22:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:22:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:22:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:22:21] 2.11.2.0 14221 181681 136696 154961 2 188 10346324 18432000 908 130560 0 122785200 99.980 6984034 32165 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 18:22:21] CVMFS is ok
[2026-01-09 18:22:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:22:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:22:21] Further information can be found at the LHC@home message board.
[2026-01-09 18:22:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:22:21] Checking for apptainer binary...
[2026-01-09 18:22:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:22:21] Running /usr/bin/apptainer --version
[2026-01-09 18:22:21] apptainer version 1.3.2-1.el7
[2026-01-09 18:22:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:22:23] c-206-9.aglt2.org
[2026-01-09 18:22:23] apptainer works
[2026-01-09 18:22:23] Set ATHENA_PROC_NUMBER=8
[2026-01-09 18:22:23] Set ATHENA_CORE_NUMBER=8
[2026-01-09 18:22:23] Starting ATLAS job with PandaID=6964539218
[2026-01-09 18:22:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:40:30]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:40:30] 2026-01-10 03:39:56,794 | INFO     | time since job start (15441s) is within the limit (349056.0s)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,656 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 22:40:30] 2026-01-10 03:39:58,660 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1717.9583333333333
[2026-01-09 22:40:30] 2026-01-10 03:39:58,663 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6964539218/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,664 | INFO     | extracted standard info from prmon json
[2026-01-09 22:40:30] 2026-01-10 03:39:58,664 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 22:40:30] 2026-01-10 03:39:58,664 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 22:40:30] 2026-01-10 03:39:58,664 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 22:40:30] 2026-01-10 03:39:58,664 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 22:40:30] 2026-01-10 03:39:58,668 | INFO     | fitting pss+swap vs Time
[2026-01-09 22:40:30] 2026-01-10 03:39:58,669 | INFO     | sum of square deviations: 5021496942.0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,670 | INFO     | sum of deviations: 22550550760.000004
[2026-01-09 22:40:30] 2026-01-10 03:39:58,671 | INFO     | mean x: 1768008666.0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,671 | INFO     | mean y: 2490296.9446640317
[2026-01-09 22:40:30] 2026-01-10 03:39:58,671 | INFO     | intersect: -7937287348.498516
[2026-01-09 22:40:30] 2026-01-10 03:39:58,671 | INFO     | chi2: 1.3140662975899986
[2026-01-09 22:40:30] 2026-01-10 03:39:58,672 | INFO     | sum of square deviations: 4729621702.0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,673 | INFO     | sum of deviations: 22099986764.999996
[2026-01-09 22:40:30] 2026-01-10 03:39:58,673 | INFO     | mean x: 1768008513.5
[2026-01-09 22:40:30] 2026-01-10 03:39:58,673 | INFO     | mean y: 2490061.5080645164
[2026-01-09 22:40:30] 2026-01-10 03:39:58,674 | INFO     | intersect: -8258839746.800845
[2026-01-09 22:40:30] 2026-01-10 03:39:58,674 | INFO     | chi2: 1.314561456333298
[2026-01-09 22:40:30] 2026-01-10 03:39:58,674 | INFO     | current chi2=1.314561456333298 (change=-0.037681412589869255 %)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,674 | INFO     | right removable region: 247
[2026-01-09 22:40:30] 2026-01-10 03:39:58,674 | INFO     | sum of square deviations: 4729621702.0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,676 | INFO     | sum of deviations: -13671519744.5
[2026-01-09 22:40:30] 2026-01-10 03:39:58,676 | INFO     | mean x: 1768008818.5
[2026-01-09 22:40:30] 2026-01-10 03:39:58,676 | INFO     | mean y: 2509063.7137096776
[2026-01-09 22:40:30] 2026-01-10 03:39:58,676 | INFO     | intersect: 5113143485.141453
[2026-01-09 22:40:30] 2026-01-10 03:39:58,677 | INFO     | chi2: 0.03725730212028936
[2026-01-09 22:40:30] 2026-01-10 03:39:58,677 | INFO     | current chi2=0.03725730212028936 (change=97.16473193258062 %)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,677 | INFO     | sum of square deviations: 4449281562.0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,679 | INFO     | sum of deviations: -16154751267.999996
[2026-01-09 22:40:30] 2026-01-10 03:39:58,679 | INFO     | mean x: 1768008971.0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,679 | INFO     | mean y: 2510393.522633745
[2026-01-09 22:40:30] 2026-01-10 03:39:58,679 | INFO     | intersect: 6421916485.965749
[2026-01-09 22:40:30] 2026-01-10 03:39:58,679 | INFO     | chi2: 0.0204642076699366
[2026-01-09 22:40:30] 2026-01-10 03:39:58,679 | INFO     | current chi2=0.0204642076699366 (change=45.07329703083272 %)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,680 | INFO     | sum of square deviations: 4180243959.5
[2026-01-09 22:40:30] 2026-01-10 03:39:58,681 | INFO     | sum of deviations: -15145532558.999998
[2026-01-09 22:40:30] 2026-01-10 03:39:58,681 | INFO     | mean x: 1768009123.5
[2026-01-09 22:40:30] 2026-01-10 03:39:58,681 | INFO     | mean y: 2509819.5210084035
[2026-01-09 22:40:30] 2026-01-10 03:39:58,682 | INFO     | intersect: 6408222022.925796
[2026-01-09 22:40:30] 2026-01-10 03:39:58,682 | INFO     | chi2: 0.020412751903459782
[2026-01-09 22:40:30] 2026-01-10 03:39:58,682 | INFO     | current chi2=0.020412751903459782 (change=0.2514427497352395 %)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,682 | INFO     | left removable region: 30
[2026-01-09 22:40:30] 2026-01-10 03:39:58,682 | INFO     | sum of square deviations: 3168461268.0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,684 | INFO     | sum of deviations: -9573523915.0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,684 | INFO     | mean x: 1768009398.0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,684 | INFO     | mean y: 2506600.7926267283
[2026-01-09 22:40:30] 2026-01-10 03:39:58,684 | INFO     | intersect: 5344557149.001428
[2026-01-09 22:40:30] 2026-01-10 03:39:58,684 | INFO     | chi2: 0.01820253226419461
[2026-01-09 22:40:30] 2026-01-10 03:39:58,684 | INFO     | current memory leak: -3.02 B/s (using 217 data points, chi2=0.02)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,685 | INFO     | could have reported an average CPU frequency of 2343 MHz (12 samples)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,685 | INFO     | ..............................
[2026-01-09 22:40:30] 2026-01-10 03:39:58,685 | INFO     | . Timing measurements:
[2026-01-09 22:40:30] 2026-01-10 03:39:58,685 | INFO     | . get job = 0 s
[2026-01-09 22:40:30] 2026-01-10 03:39:58,685 | INFO     | . initial setup = 2 s
[2026-01-09 22:40:30] 2026-01-10 03:39:58,685 | INFO     | . payload setup = 5 s
[2026-01-09 22:40:30] 2026-01-10 03:39:58,685 | INFO     | . stage-in = 0 s
[2026-01-09 22:40:30] 2026-01-10 03:39:58,686 | INFO     | . payload execution = 15410 s
[2026-01-09 22:40:30] 2026-01-10 03:39:58,686 | INFO     | . stage-out = 2 s
[2026-01-09 22:40:30] 2026-01-10 03:39:58,686 | INFO     | . log creation = 0 s
[2026-01-09 22:40:30] 2026-01-10 03:39:58,686 | INFO     | ..............................
[2026-01-09 22:40:30] 2026-01-10 03:39:58,767 | INFO     | 
[2026-01-09 22:40:30] 2026-01-10 03:39:58,767 | INFO     | job summary report
[2026-01-09 22:40:30] 2026-01-10 03:39:58,768 | INFO     | --------------------------------------------------
[2026-01-09 22:40:30] 2026-01-10 03:39:58,768 | INFO     | PanDA job id: 6964539218
[2026-01-09 22:40:30] 2026-01-10 03:39:58,768 | INFO     | task id: 47898826
[2026-01-09 22:40:30] 2026-01-10 03:39:58,768 | INFO     | errors: (none)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,768 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 22:40:30] 2026-01-10 03:39:58,769 | INFO     | pilot state: finished 
[2026-01-09 22:40:30] 2026-01-10 03:39:58,769 | INFO     | transexitcode: 0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,769 | INFO     | exeerrorcode: 0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,769 | INFO     | exeerrordiag: 
[2026-01-09 22:40:30] 2026-01-10 03:39:58,769 | INFO     | exitcode: 0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,769 | INFO     | exitmsg: OK
[2026-01-09 22:40:30] 2026-01-10 03:39:58,769 | INFO     | cpuconsumptiontime: 118748 s
[2026-01-09 22:40:30] 2026-01-10 03:39:58,770 | INFO     | nevents: 400
[2026-01-09 22:40:30] 2026-01-10 03:39:58,770 | INFO     | neventsw: 0
[2026-01-09 22:40:30] 2026-01-10 03:39:58,770 | INFO     | pid: 16126
[2026-01-09 22:40:30] 2026-01-10 03:39:58,770 | INFO     | pgrp: 16126
[2026-01-09 22:40:30] 2026-01-10 03:39:58,770 | INFO     | corecount: 8
[2026-01-09 22:40:30] 2026-01-10 03:39:58,770 | INFO     | event service: False
[2026-01-09 22:40:30] 2026-01-10 03:39:58,771 | INFO     | sizes: {0: 2283918, 1: 2283918, 5: 2284208, 11: 2284264, 15418: 2315420, 15419: 2315419, 15422: 2324657, 15428: 2324795}
[2026-01-09 22:40:30] 2026-01-10 03:39:58,771 | INFO     | --------------------------------------------------
[2026-01-09 22:40:30] 2026-01-10 03:39:58,771 | INFO     | 
[2026-01-09 22:40:30] 2026-01-10 03:39:58,771 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 22:40:30] 2026-01-10 03:39:58,795 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,795 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,795 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,796 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,796 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,796 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,796 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,796 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,796 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,797 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,797 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,797 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,797 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,797 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,797 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,798 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,798 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,798 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,798 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,798 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:40:30] 2026-01-10 03:39:58,798 | INFO     | job 6964539218 has completed (purged errors)
[2026-01-09 22:40:30] 2026-01-10 03:39:58,798 | INFO     | overall cleanup function is called
[2026-01-09 22:40:30] 2026-01-10 03:39:59,806 | INFO     | --- collectZombieJob: --- 10, [16126]
[2026-01-09 22:40:30] 2026-01-10 03:39:59,806 | INFO     | zombie collector waiting for pid 16126
[2026-01-09 22:40:30] 2026-01-10 03:39:59,806 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:40:30] 2026-01-10 03:39:59,806 | INFO     | collected zombie processes
[2026-01-09 22:40:30] 2026-01-10 03:39:59,806 | INFO     | will attempt to kill all subprocesses of pid=16126
[2026-01-09 22:40:30] 2026-01-10 03:39:59,910 | INFO     | process IDs to be killed: [16126] (in reverse order)
[2026-01-09 22:40:30] 2026-01-10 03:39:59,954 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:40:30] 2026-01-10 03:39:59,954 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:40:30] 2026-01-10 03:39:59,957 | INFO     | did not find any defunct processes belonging to 16126
[2026-01-09 22:40:30] 2026-01-10 03:39:59,959 | INFO     | did not find any defunct processes belonging to 16126
[2026-01-09 22:40:30] 2026-01-10 03:39:59,959 | INFO     | ready for new job
[2026-01-09 22:40:30] 2026-01-10 03:39:59,959 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:40:30] 2026-01-10 03:39:59,960 | INFO     | ***************************************
[2026-01-09 22:40:30] 2026-01-10 03:39:59,961 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:40:30] 2026-01-10 03:39:59,961 | INFO     | ***************************************
[2026-01-09 22:40:30] 2026-01-10 03:39:59,961 | INFO     | 
[2026-01-09 22:40:30] 2026-01-10 03:39:59,962 | INFO     | architecture information:
[2026-01-09 22:40:30] 2026-01-10 03:39:59,962 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:40:30] 2026-01-10 03:39:59,977 | INFO     | cat /etc/os-release:
[2026-01-09 22:40:30] NAME="CentOS Linux"
[2026-01-09 22:40:30] VERSION="7 (Core)"
[2026-01-09 22:40:30] ID="centos"
[2026-01-09 22:40:30] ID_LIKE="rhel fedora"
[2026-01-09 22:40:30] VERSION_ID="7"
[2026-01-09 22:40:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:40:30] ANSI_COLOR="0;31"
[2026-01-09 22:40:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:40:30] HOME_URL="https://www.centos.org/"
[2026-01-09 22:40:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:40:30] 
[2026-01-09 22:40:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:40:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:40:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:40:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:40:30] 
[2026-01-09 22:40:30] 2026-01-10 03:39:59,977 | INFO     | ***************************************
[2026-01-09 22:40:30] 2026-01-10 03:40:00,480 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 22:40:30] 2026-01-10 03:40:00,498 | INFO     | sufficient remaining disk space (28740419584 B)
[2026-01-09 22:40:30] 2026-01-10 03:40:00,498 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:40:30] 2026-01-10 03:40:00,498 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:40:30] 2026-01-10 03:40:00,498 | INFO     | update_server=False
[2026-01-09 22:40:30] 2026-01-10 03:40:00,499 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:40:30] 2026-01-10 03:40:00,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:40:30] 2026-01-10 03:40:00,499 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:40:30] 2026-01-10 03:40:00,500 | INFO     | aborting loop
[2026-01-09 22:40:30] 2026-01-10 03:40:00,739 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:40:30] 2026-01-10 03:40:00,750 | INFO     | all data control threads have been joined
[2026-01-09 22:40:30] 2026-01-10 03:40:00,808 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:40:30] 2026-01-10 03:40:01,504 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:01,505 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:01,505 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:01,539 | INFO     | all payload control threads have been joined
[2026-01-09 22:40:30] 2026-01-10 03:40:01,727 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:01,756 | INFO     | [data] control thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:01,772 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:01,773 | INFO     | [job] validate thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:01,778 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:01,826 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:01,955 | INFO     | all job control threads have been joined
[2026-01-09 22:40:30] 2026-01-10 03:40:02,180 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:02,544 | INFO     | [payload] control thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:02,810 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:02,811 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:02,960 | INFO     | [job] control thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:03,773 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:40:30] 2026-01-10 03:40:07,779 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:11,212 | INFO     | job.realtimelogging is not enabled
[2026-01-09 22:40:30] 2026-01-10 03:40:12,217 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:40:30] 2026-01-10 03:40:12,397 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140166673561408)>', '<ExcThread(monitor, started 140165787940608)>']
[2026-01-09 22:40:30] 2026-01-10 03:40:17,399 | INFO     | all workflow threads have been joined
[2026-01-09 22:40:30] 2026-01-10 03:40:17,399 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:40:30] 2026-01-10 03:40:17,399 | INFO     | traces error code: 0
[2026-01-09 22:40:30] 2026-01-10 03:40:17,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:40:30] 2026-01-10 03:40:30,001 | INFO     | PID=9653 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 22:40:30] 2026-01-10 03:40:30,001 | INFO     | .. there are 2 such processes running
[2026-01-09 22:40:30] 2026-01-10 03:40:30,002 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:40:30] 2026-01-10 03:40:30,002 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:40:30] 2026-01-10 03:40:30,002 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:40:30] 2026-01-10 03:40:30,002 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:40:30] 2026-01-10 03:40:30,002 | INFO     | [monitor] control thread has ended
[2026-01-09 22:40:30] 2026-01-10 03:40:30,088 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:40:30] 2026-01-10 03:40:30,091 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:40:30] 2026-01-10 03:40:30,095 [wrapper] pilotpid: 9653
[2026-01-09 22:40:30] 2026-01-10 03:40:30,098 [wrapper] Pilot exit status: 0
[2026-01-09 22:40:30] 2026-01-10 03:40:30,109 [wrapper] pandaids: 6964539218
[2026-01-09 22:40:30] 2026-01-10 03:40:30,148 [wrapper] cleanup supervisor_pilot 26781 9654
[2026-01-09 22:40:30] 2026-01-10 03:40:30,151 [wrapper] Test setup, not cleaning
[2026-01-09 22:40:30] 2026-01-10 03:40:30,155 [wrapper] apfmon messages muted
[2026-01-09 22:40:30] 2026-01-10 03:40:30,158 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:40:30] 2026-01-10 03:40:30,162 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:40:30]  *** Error codes and diagnostics ***
[2026-01-09 22:40:30]     "exeErrorCode": 0,
[2026-01-09 22:40:30]     "exeErrorDiag": "",
[2026-01-09 22:40:30]     "pilotErrorCode": 0,
[2026-01-09 22:40:30]     "pilotErrorDiag": "",
[2026-01-09 22:40:30]  *** Listing of results directory ***
[2026-01-09 22:40:30] total 437876
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas      5112 Jan  9 10:55 queuedata.json
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas    579449 Jan  9 10:55 pilot3.tar.gz
[2026-01-09 22:40:30] -rwx------ 1 boincer umatlas     36322 Jan  9 10:56 runpilot2-wrapper.sh
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas       100 Jan  9 18:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:40:30] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 18:22 run_atlas
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas       105 Jan  9 18:22 job.xml
[2026-01-09 22:40:30] -rw-r--r-- 2 boincer umatlas 224517050 Jan  9 18:22 EVNT.47898824._001448.pool.root.1
[2026-01-09 22:40:30] drwxrwx--x 2 boincer umatlas      4096 Jan  9 18:22 shared
[2026-01-09 22:40:30] -rw-r--r-- 2 boincer umatlas    592403 Jan  9 18:22 input.tar.gz
[2026-01-09 22:40:30] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 18:22 start_atlas.sh
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas         0 Jan  9 18:22 boinc_lockfile
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas      2518 Jan  9 18:22 pandaJob.out
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas        57 Jan  9 18:22 setup.sh.local
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas    989374 Jan  9 18:22 agis_schedconf.cvmfs.json
[2026-01-09 22:40:30] drwx------ 5 boincer umatlas      4096 Jan  9 18:22 pilot3
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas      5951 Jan  9 22:36 init_data.xml
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas       532 Jan  9 22:39 boinc_task_state.xml
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas 214736635 Jan  9 22:39 HITS.47898826._040102.pool.root.1
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas      1051 Jan  9 22:39 memory_monitor_summary.json
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas   1516240 Jan  9 22:39 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas    462305 Jan  9 22:39 log.47898826._040102.job.log.tgz.1
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas      7856 Jan  9 22:39 heartbeat.json
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 22:40 boinc_mmap_file
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas        29 Jan  9 22:40 wrapper_checkpoint.txt
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas       819 Jan  9 22:40 pilotlog.txt
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas        95 Jan  9 22:40 pilot_heartbeat.json
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas   2146244 Jan  9 22:40 log.47898826._040102.job.log.1
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas       357 Jan  9 22:40 output.list
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas       620 Jan  9 22:40 runtime_log
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas   2631680 Jan  9 22:40 result.tar.gz
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas      9338 Jan  9 22:40 runtime_log.err
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas       661 Jan  9 22:40 pnnNDmP1Ty8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTemKDmaKdxFo.diag
[2026-01-09 22:40:30] -rw-r--r-- 1 boincer umatlas     21058 Jan  9 22:40 stderr.txt
[2026-01-09 22:40:30] HITS file was successfully produced:
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas 214736635 Jan  9 22:39 shared/HITS.pool.root.1
[2026-01-09 22:40:30]  *** Contents of shared directory: ***
[2026-01-09 22:40:30] total 432136
[2026-01-09 22:40:30] -rw-r--r-- 2 boincer umatlas 224517050 Jan  9 18:22 ATLAS.root_0
[2026-01-09 22:40:30] -rw-r--r-- 2 boincer umatlas    592403 Jan  9 18:22 input.tar.gz
[2026-01-09 22:40:30] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 18:22 start_atlas.sh
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas 214736635 Jan  9 22:39 HITS.pool.root.1
[2026-01-09 22:40:30] -rw------- 1 boincer umatlas   2631680 Jan  9 22:40 result.tar.gz
22:40:31 (5946): run_atlas exited; CPU time 118946.684163
22:40:31 (5946): called boinc_finish(0)

</stderr_txt>
]]>

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