Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:50:28 (392137): wrapper (7.7.26015): starting
00:50:28 (392137): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 00:50:28] Arguments: --nthreads 4
[2026-01-10 00:50:28] Threads: 4
[2026-01-10 00:50:28] Checking for CVMFS
[2026-01-10 00:50:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:50:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:50:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:50:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:50:28] 2.11.0.0 87117 3040 130380 154963 2 253 3343113 4096000 5385 130560 0 12500262 99.998 109994 3641 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-10 00:50:28] CVMFS is ok
[2026-01-10 00:50:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 00:50:28] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-10 00:50:28] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-10 00:50:28] Further information can be found at the LHC@home message board.
[2026-01-10 00:50:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:50:28] Checking for apptainer binary...
[2026-01-10 00:50:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 00:50:28] Running /usr/bin/apptainer --version
[2026-01-10 00:50:28] apptainer version 1.4.5
[2026-01-10 00:50:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:50:28] x32-linux2
[2026-01-10 00:50:28] apptainer works
[2026-01-10 00:50:28] Set ATHENA_PROC_NUMBER=4
[2026-01-10 00:50:28] Set ATHENA_CORE_NUMBER=4
[2026-01-10 00:50:28] Starting ATLAS job with PandaID=6963383561
[2026-01-10 00:50:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 03:40:21]  *** The last 200 lines of the pilot log: ***
[2026-01-10 03:40:21] 2026-01-10 08:39:49,171 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3676.750625
[2026-01-10 03:40:21] 2026-01-10 08:39:49,174 | INFO     | sufficient remaining disk space (412753068032 B)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,175 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,176 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6963383561/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,177 | INFO     | extracted standard info from prmon json
[2026-01-10 03:40:21] 2026-01-10 08:39:49,177 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 03:40:21] 2026-01-10 08:39:49,177 | INFO     | size of work directory /var/lib/boinc-client/slots/1/PanDA_Pilot-6963383561: 2852430 B (within 4404019200 B limit)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,177 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 03:40:21] 2026-01-10 08:39:49,178 | INFO     | pfn file=/var/lib/boinc-client/slots/1/PanDA_Pilot-6963383561/HITS.47898826._039542.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,178 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 03:40:21] 2026-01-10 08:39:49,178 | INFO     | total size of present files: 0 B (workdir size: 2852430 B)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,178 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 03:40:21] 2026-01-10 08:39:49,178 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/1/PanDA_Pilot-6963383561/HITS.47898826._039542.pool.root.1 since it does not exist
[2026-01-10 03:40:21] 2026-01-10 08:39:49,181 | INFO     | fitting pss+swap vs Time
[2026-01-10 03:40:21] 2026-01-10 08:39:49,181 | INFO     | sum of square deviations: 1418361477.5
[2026-01-10 03:40:21] 2026-01-10 08:39:49,182 | INFO     | sum of deviations: 12857891069.5
[2026-01-10 03:40:21] 2026-01-10 08:39:49,182 | INFO     | mean x: 1768029289.5
[2026-01-10 03:40:21] 2026-01-10 08:39:49,182 | INFO     | mean y: 2313456.5963855423
[2026-01-10 03:40:21] 2026-01-10 08:39:49,182 | INFO     | intersect: -16025425855.77258
[2026-01-10 03:40:21] 2026-01-10 08:39:49,182 | INFO     | chi2: 1.401429283591498
[2026-01-10 03:40:21] 2026-01-10 08:39:49,183 | INFO     | sum of square deviations: 1294014960.0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,183 | INFO     | sum of deviations: 12343000348.0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,183 | INFO     | mean x: 1768029137.0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,183 | INFO     | mean y: 2312824.944099379
[2026-01-10 03:40:21] 2026-01-10 08:39:49,183 | INFO     | intersect: -16862085909.10542
[2026-01-10 03:40:21] 2026-01-10 08:39:49,184 | INFO     | chi2: 1.4025806616750902
[2026-01-10 03:40:21] 2026-01-10 08:39:49,184 | INFO     | current chi2=1.4025806616750902 (change=-0.08215741579492558 %)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,184 | INFO     | right removable region: 160
[2026-01-10 03:40:21] 2026-01-10 08:39:49,184 | INFO     | sum of square deviations: 1294014960.0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,185 | INFO     | sum of deviations: -7862511124.999999
[2026-01-10 03:40:21] 2026-01-10 08:39:49,185 | INFO     | mean x: 1768029442.0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,185 | INFO     | mean y: 2338438.881987578
[2026-01-10 03:40:21] 2026-01-10 08:39:49,185 | INFO     | intersect: 10744989479.834824
[2026-01-10 03:40:21] 2026-01-10 08:39:49,185 | INFO     | chi2: 0.013769538094861547
[2026-01-10 03:40:21] 2026-01-10 08:39:49,185 | INFO     | current chi2=0.013769538094861547 (change=99.01746465154676 %)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,185 | INFO     | sum of square deviations: 1177156955.0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,186 | INFO     | sum of deviations: -7864526870.000001
[2026-01-10 03:40:21] 2026-01-10 08:39:49,186 | INFO     | mean x: 1768029594.5
[2026-01-10 03:40:21] 2026-01-10 08:39:49,186 | INFO     | mean y: 2338436.346153846
[2026-01-10 03:40:21] 2026-01-10 08:39:49,186 | INFO     | intersect: 11814455923.177343
[2026-01-10 03:40:21] 2026-01-10 08:39:49,186 | INFO     | chi2: 0.012840562115262215
[2026-01-10 03:40:21] 2026-01-10 08:39:49,186 | INFO     | current chi2=0.012840562115262215 (change=6.7466023420640635 %)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,186 | INFO     | left removable region: 20
[2026-01-10 03:40:21] 2026-01-10 08:39:49,187 | INFO     | sum of square deviations: 850825255.0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,187 | INFO     | sum of deviations: -6589309517.5
[2026-01-10 03:40:21] 2026-01-10 08:39:49,187 | INFO     | mean x: 1768029716.5
[2026-01-10 03:40:21] 2026-01-10 08:39:49,187 | INFO     | mean y: 2336824.492857143
[2026-01-10 03:40:21] 2026-01-10 08:39:49,187 | INFO     | intersect: 13695036905.611485
[2026-01-10 03:40:21] 2026-01-10 08:39:49,188 | INFO     | chi2: 0.011808711751017782
[2026-01-10 03:40:21] 2026-01-10 08:39:49,188 | INFO     | current memory leak: -7.74 B/s (using 140 data points, chi2=0.01)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,188 | INFO     | could have reported an average CPU frequency of 3833 MHz (9 samples)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,188 | INFO     | ..............................
[2026-01-10 03:40:21] 2026-01-10 08:39:49,188 | INFO     | . Timing measurements:
[2026-01-10 03:40:21] 2026-01-10 08:39:49,188 | INFO     | . get job = 0 s
[2026-01-10 03:40:21] 2026-01-10 08:39:49,188 | INFO     | . initial setup = 2 s
[2026-01-10 03:40:21] 2026-01-10 08:39:49,188 | INFO     | . payload setup = 3 s
[2026-01-10 03:40:21] 2026-01-10 08:39:49,188 | INFO     | . stage-in = 0 s
[2026-01-10 03:40:21] 2026-01-10 08:39:49,188 | INFO     | . payload execution = 10125 s
[2026-01-10 03:40:21] 2026-01-10 08:39:49,189 | INFO     | . stage-out = 0 s
[2026-01-10 03:40:21] 2026-01-10 08:39:49,189 | INFO     | . log creation = 0 s
[2026-01-10 03:40:21] 2026-01-10 08:39:49,189 | INFO     | ..............................
[2026-01-10 03:40:21] 2026-01-10 08:39:49,254 | INFO     | 
[2026-01-10 03:40:21] 2026-01-10 08:39:49,254 | INFO     | job summary report
[2026-01-10 03:40:21] 2026-01-10 08:39:49,254 | INFO     | --------------------------------------------------
[2026-01-10 03:40:21] 2026-01-10 08:39:49,254 | INFO     | PanDA job id: 6963383561
[2026-01-10 03:40:21] 2026-01-10 08:39:49,254 | INFO     | task id: 47898826
[2026-01-10 03:40:21] 2026-01-10 08:39:49,254 | INFO     | errors: (none)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | pilot state: finished 
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | transexitcode: 0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | exeerrorcode: 0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | exeerrordiag: 
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | exitcode: 0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | exitmsg: OK
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | cpuconsumptiontime: 39342 s
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | nevents: 400
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | neventsw: 0
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | pid: 402655
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | pgrp: 402655
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | corecount: 4
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | event service: False
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | sizes: {0: 2283751, 1: 2283950, 4: 2284212, 11: 2284240, 10132: 2322001, 10139: 2322231}
[2026-01-10 03:40:21] 2026-01-10 08:39:49,255 | INFO     | --------------------------------------------------
[2026-01-10 03:40:21] 2026-01-10 08:39:49,256 | INFO     | 
[2026-01-10 03:40:21] 2026-01-10 08:39:49,256 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-01-10 03:40:21] 2026-01-10 08:39:49,269 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,270 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,270 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,270 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,270 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,270 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,270 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,270 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,270 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,270 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,270 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | job 6963383561 has completed (purged errors)
[2026-01-10 03:40:21] 2026-01-10 08:39:49,271 | INFO     | overall cleanup function is called
[2026-01-10 03:40:21] 2026-01-10 08:39:49,404 | INFO     | number of running child processes to parent process 402655: 1
[2026-01-10 03:40:21] 2026-01-10 08:39:49,404 | INFO     | maximum number of monitored processes: 6
[2026-01-10 03:40:21] 2026-01-10 08:39:49,404 | INFO     | aborting job monitoring since job object (job id=6963383561) has expired
[2026-01-10 03:40:21] 2026-01-10 08:39:50,278 | INFO     | --- collectZombieJob: --- 10, [402655]
[2026-01-10 03:40:21] 2026-01-10 08:39:50,278 | INFO     | zombie collector waiting for pid 402655
[2026-01-10 03:40:21] 2026-01-10 08:39:50,278 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 03:40:21] 2026-01-10 08:39:50,278 | INFO     | collected zombie processes
[2026-01-10 03:40:21] 2026-01-10 08:39:50,278 | INFO     | will attempt to kill all subprocesses of pid=402655
[2026-01-10 03:40:21] 2026-01-10 08:39:50,420 | INFO     | process IDs to be killed: [402655] (in reverse order)
[2026-01-10 03:40:21] 2026-01-10 08:39:50,472 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 03:40:21] 2026-01-10 08:39:50,472 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 03:40:21] 2026-01-10 08:39:50,476 | INFO     | did not find any defunct processes belonging to 402655
[2026-01-10 03:40:21] 2026-01-10 08:39:50,479 | INFO     | did not find any defunct processes belonging to 402655
[2026-01-10 03:40:21] 2026-01-10 08:39:50,479 | INFO     | ready for new job
[2026-01-10 03:40:21] 2026-01-10 08:39:50,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 03:40:21] 2026-01-10 08:39:50,481 | INFO     | ***************************************
[2026-01-10 03:40:21] 2026-01-10 08:39:50,481 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 03:40:21] 2026-01-10 08:39:50,481 | INFO     | ***************************************
[2026-01-10 03:40:21] 2026-01-10 08:39:50,481 | INFO     | 
[2026-01-10 03:40:21] 2026-01-10 08:39:50,482 | INFO     | architecture information:
[2026-01-10 03:40:21] 2026-01-10 08:39:50,483 | INFO     | executing command: cat /etc/os-release
[2026-01-10 03:40:21] 2026-01-10 08:39:50,492 | INFO     | cat /etc/os-release:
[2026-01-10 03:40:21] NAME="CentOS Linux"
[2026-01-10 03:40:21] VERSION="7 (Core)"
[2026-01-10 03:40:21] ID="centos"
[2026-01-10 03:40:21] ID_LIKE="rhel fedora"
[2026-01-10 03:40:21] VERSION_ID="7"
[2026-01-10 03:40:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 03:40:21] ANSI_COLOR="0;31"
[2026-01-10 03:40:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 03:40:21] HOME_URL="https://www.centos.org/"
[2026-01-10 03:40:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 03:40:21] 
[2026-01-10 03:40:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 03:40:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 03:40:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 03:40:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 03:40:21] 
[2026-01-10 03:40:21] 2026-01-10 08:39:50,493 | INFO     | ***************************************
[2026-01-10 03:40:21] 2026-01-10 08:39:50,995 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-01-10 03:40:21] 2026-01-10 08:39:51,007 | INFO     | sufficient remaining disk space (412756213760 B)
[2026-01-10 03:40:21] 2026-01-10 08:39:51,007 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 03:40:21] 2026-01-10 08:39:51,007 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 03:40:21] 2026-01-10 08:39:51,007 | INFO     | update_server=False
[2026-01-10 03:40:21] 2026-01-10 08:39:51,007 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 03:40:21] 2026-01-10 08:39:51,007 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:40:21] 2026-01-10 08:39:51,008 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:40:21] 2026-01-10 08:39:51,008 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 03:40:21] 2026-01-10 08:39:51,008 | INFO     | aborting loop
[2026-01-10 03:40:21] 2026-01-10 08:39:51,084 | INFO     | all data control threads have been joined
[2026-01-10 03:40:21] 2026-01-10 08:39:51,906 | INFO     | all payload control threads have been joined
[2026-01-10 03:40:21] 2026-01-10 08:39:52,012 | INFO     | [job] retrieve thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,013 | INFO     | [job] queue monitor thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,013 | INFO     | [job] job monitor thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,086 | INFO     | [data] control thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,102 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,357 | INFO     | [job] validate thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,658 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,700 | INFO     | all job control threads have been joined
[2026-01-10 03:40:21] 2026-01-10 08:39:52,762 | INFO     | [payload] validate_post thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,780 | INFO     | [monitor] cgroup control has ended
[2026-01-10 03:40:21] 2026-01-10 08:39:52,782 | INFO     | [data] copytool_in thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,784 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,827 | INFO     | [payload] failed_post thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:52,908 | INFO     | [payload] control thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:53,013 | INFO     | [data] copytool_out thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:53,244 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 03:40:21] 2026-01-10 08:39:53,706 | INFO     | [job] control thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:39:57,245 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:40:01,056 | INFO     | job.realtimelogging is not enabled
[2026-01-10 03:40:21] 2026-01-10 08:40:02,061 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 03:40:21] 2026-01-10 08:40:02,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137603210868544)>', '<ExcThread(monitor, started 137602430662400)>']
[2026-01-10 03:40:21] 2026-01-10 08:40:07,435 | INFO     | all workflow threads have been joined
[2026-01-10 03:40:21] 2026-01-10 08:40:07,436 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 03:40:21] 2026-01-10 08:40:07,436 | INFO     | traces error code: 0
[2026-01-10 03:40:21] 2026-01-10 08:40:07,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 03:40:21] 2026-01-10 08:40:21,721 | INFO     | PID=395989 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 03:40:21] 2026-01-10 08:40:21,721 | INFO     | .. there are 7 such processes running
[2026-01-10 03:40:21] 2026-01-10 08:40:21,721 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 03:40:21] 2026-01-10 08:40:21,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 03:40:21] 2026-01-10 08:40:21,721 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 03:40:21] 2026-01-10 08:40:21,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 03:40:21] 2026-01-10 08:40:21,722 | INFO     | [monitor] control thread has ended
[2026-01-10 03:40:21] 2026-01-10 08:40:21,784 [wrapper] ==== pilot stdout END ====
[2026-01-10 03:40:21] 2026-01-10 08:40:21,786 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 03:40:21] 2026-01-10 08:40:21,788 [wrapper] pilotpid: 395989
[2026-01-10 03:40:21] 2026-01-10 08:40:21,790 [wrapper] Pilot exit status: 0
[2026-01-10 03:40:21] 2026-01-10 08:40:21,796 [wrapper] pandaids: 6963383561
[2026-01-10 03:40:21] 2026-01-10 08:40:21,829 [wrapper] cleanup supervisor_pilot  578209 395990
[2026-01-10 03:40:21] 2026-01-10 08:40:21,831 [wrapper] Test setup, not cleaning
[2026-01-10 03:40:21] 2026-01-10 08:40:21,833 [wrapper] apfmon messages muted
[2026-01-10 03:40:21] 2026-01-10 08:40:21,835 [wrapper] ==== wrapper stdout END ====
[2026-01-10 03:40:21] 2026-01-10 08:40:21,837 [wrapper] ==== wrapper stderr END ====
[2026-01-10 03:40:21]  *** Error codes and diagnostics ***
[2026-01-10 03:40:21]     "exeErrorCode": 0,
[2026-01-10 03:40:21]     "exeErrorDiag": "",
[2026-01-10 03:40:21]     "pilotErrorCode": 0,
[2026-01-10 03:40:21]     "pilotErrorDiag": "",
[2026-01-10 03:40:21]  *** Listing of results directory ***
[2026-01-10 03:40:21] total 440464
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-10 03:40:21] -rwx------ 1 boinc boinc     36322 Jan  8 23:23 runpilot2-wrapper.sh
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc      5112 Jan  8 23:24 queuedata.json
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc       100 Jan 10 00:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 03:40:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 00:50 run_atlas
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc       105 Jan 10 00:50 job.xml
[2026-01-10 03:40:21] -rw-r--r-- 2 boinc boinc 226104952 Jan 10 00:50 EVNT.47898824._000484.pool.root.1
[2026-01-10 03:40:21] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:50 start_atlas.sh
[2026-01-10 03:40:21] drwxrwx--x 2 boinc boinc      4096 Jan 10 00:50 shared
[2026-01-10 03:40:21] -rw-r--r-- 2 boinc boinc    592401 Jan 10 00:50 input.tar.gz
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc      9252 Jan 10 00:50 init_data.xml
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:50 boinc_setup_complete
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:50 boinc_lockfile
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc      2517 Jan 10 00:50 pandaJob.out
[2026-01-10 03:40:21] -rw------- 1 boinc boinc    989382 Jan 10 00:50 agis_schedconf.cvmfs.json
[2026-01-10 03:40:21] -rw------- 1 boinc boinc   1516240 Jan 10 00:50 agis_ddmendpoints.agis.ALL.json
[2026-01-10 03:40:21] drwx------ 5 boinc boinc      4096 Jan 10 00:50 pilot3
[2026-01-10 03:40:21] -rw------- 1 boinc boinc 217386662 Jan 10 03:39 HITS.47898826._039542.pool.root.1
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc       531 Jan 10 03:39 boinc_task_state.xml
[2026-01-10 03:40:21] -rw------- 1 boinc boinc      1024 Jan 10 03:39 memory_monitor_summary.json
[2026-01-10 03:40:21] -rw------- 1 boinc boinc        95 Jan 10 03:39 pilot_heartbeat.json
[2026-01-10 03:40:21] -rw------- 1 boinc boinc    346544 Jan 10 03:39 log.47898826._039542.job.log.tgz.1
[2026-01-10 03:40:21] -rw------- 1 boinc boinc      7745 Jan 10 03:39 heartbeat.json
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc      8192 Jan 10 03:40 boinc_mmap_file
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc        28 Jan 10 03:40 wrapper_checkpoint.txt
[2026-01-10 03:40:21] -rw------- 1 boinc boinc       821 Jan 10 03:40 pilotlog.txt
[2026-01-10 03:40:21] -rw------- 1 boinc boinc   1466760 Jan 10 03:40 log.47898826._039542.job.log.1
[2026-01-10 03:40:21] -rw------- 1 boinc boinc       357 Jan 10 03:40 output.list
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc       620 Jan 10 03:40 runtime_log
[2026-01-10 03:40:21] -rw------- 1 boinc boinc   1832960 Jan 10 03:40 result.tar.gz
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc      8893 Jan 10 03:40 runtime_log.err
[2026-01-10 03:40:21] -rw------- 1 boinc boinc       647 Jan 10 03:40 17PMDmHDJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmf2gKDm39cM0n.diag
[2026-01-10 03:40:21] -rw-r--r-- 1 boinc boinc     21570 Jan 10 03:40 stderr.txt
[2026-01-10 03:40:21] HITS file was successfully produced:
[2026-01-10 03:40:21] -rw------- 1 boinc boinc 217386662 Jan 10 03:39 shared/HITS.pool.root.1
[2026-01-10 03:40:21]  *** Contents of shared directory: ***
[2026-01-10 03:40:21] total 435496
[2026-01-10 03:40:21] -rw-r--r-- 2 boinc boinc 226104952 Jan 10 00:50 ATLAS.root_0
[2026-01-10 03:40:21] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:50 start_atlas.sh
[2026-01-10 03:40:21] -rw-r--r-- 2 boinc boinc    592401 Jan 10 00:50 input.tar.gz
[2026-01-10 03:40:21] -rw------- 1 boinc boinc 217386662 Jan 10 03:39 HITS.pool.root.1
[2026-01-10 03:40:21] -rw------- 1 boinc boinc   1832960 Jan 10 03:40 result.tar.gz
03:40:23 (392137): run_atlas exited; CPU time 39485.104494
03:40:23 (392137): called boinc_finish(0)

</stderr_txt>
]]>

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