Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:48:43 (1203833): wrapper (7.7.26015): starting
08:48:43 (1203833): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 08:48:43] Arguments: --nthreads 4
[2026-01-11 08:48:43] Threads: 4
[2026-01-11 08:48:43] Checking for CVMFS
[2026-01-11 08:48:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 08:48:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 08:48:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 08:48:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 08:48:43] 2.9.2.0 99878 4646 102784 155009 2 81 36662465 36864000 0 130560 0 2911519 99.988 172867 3812 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-11 08:48:43] CVMFS is ok
[2026-01-11 08:48:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 08:48:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 08:48:43] Further information can be found at the LHC@home message board.
[2026-01-11 08:48:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 08:48:43] Checking for apptainer binary...
[2026-01-11 08:48:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 08:48:43] Running /usr/bin/apptainer --version
[2026-01-11 08:48:43] apptainer version 1.4.1-1.1
[2026-01-11 08:48:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 08:48:43] thA315a
[2026-01-11 08:48:43] apptainer works
[2026-01-11 08:48:43] Set ATHENA_PROC_NUMBER=4
[2026-01-11 08:48:43] Set ATHENA_CORE_NUMBER=4
[2026-01-11 08:48:43] Starting ATLAS job with PandaID=6963188501
[2026-01-11 08:48:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 10:27:04]  *** The last 200 lines of the pilot log: ***
[2026-01-11 10:27:04] 2026-01-11 09:26:28,914 | INFO     | job 6963188501 has completed (purged errors)
[2026-01-11 10:27:04] 2026-01-11 09:26:28,914 | INFO     | overall cleanup function is called
[2026-01-11 10:27:04] 2026-01-11 09:26:29,920 | INFO     | --- collectZombieJob: --- 10, [1214223]
[2026-01-11 10:27:04] 2026-01-11 09:26:29,920 | INFO     | zombie collector waiting for pid 1214223
[2026-01-11 10:27:04] 2026-01-11 09:26:29,920 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 10:27:04] 2026-01-11 09:26:29,920 | INFO     | collected zombie processes
[2026-01-11 10:27:04] 2026-01-11 09:26:29,920 | INFO     | will attempt to kill all subprocesses of pid=1214223
[2026-01-11 10:27:04] 2026-01-11 09:26:29,965 | INFO     | process IDs to be killed: [1214223] (in reverse order)
[2026-01-11 10:27:04] 2026-01-11 09:26:29,996 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 10:27:04] 2026-01-11 09:26:29,996 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 10:27:04] 2026-01-11 09:26:29,998 | INFO     | did not find any defunct processes belonging to 1214223
[2026-01-11 10:27:04] 2026-01-11 09:26:29,999 | INFO     | did not find any defunct processes belonging to 1214223
[2026-01-11 10:27:04] 2026-01-11 09:26:29,999 | INFO     | ready for new job
[2026-01-11 10:27:04] 2026-01-11 09:26:29,999 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 10:27:04] 2026-01-11 09:26:30,000 | INFO     | ***************************************
[2026-01-11 10:27:04] 2026-01-11 09:26:30,000 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 10:27:04] 2026-01-11 09:26:30,000 | INFO     | ***************************************
[2026-01-11 10:27:04] 2026-01-11 09:26:30,000 | INFO     | 
[2026-01-11 10:27:04] 2026-01-11 09:26:30,001 | INFO     | architecture information:
[2026-01-11 10:27:04] 2026-01-11 09:26:30,001 | INFO     | executing command: cat /etc/os-release
[2026-01-11 10:27:04] 2026-01-11 09:26:30,013 | INFO     | cat /etc/os-release:
[2026-01-11 10:27:04] NAME="CentOS Linux"
[2026-01-11 10:27:04] VERSION="7 (Core)"
[2026-01-11 10:27:04] ID="centos"
[2026-01-11 10:27:04] ID_LIKE="rhel fedora"
[2026-01-11 10:27:04] VERSION_ID="7"
[2026-01-11 10:27:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 10:27:04] ANSI_COLOR="0;31"
[2026-01-11 10:27:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 10:27:04] HOME_URL="https://www.centos.org/"
[2026-01-11 10:27:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 10:27:04] 
[2026-01-11 10:27:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 10:27:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 10:27:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 10:27:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 10:27:04] 
[2026-01-11 10:27:04] 2026-01-11 09:26:30,013 | INFO     | ***************************************
[2026-01-11 10:27:04] 2026-01-11 09:26:30,517 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | INFO     | sufficient remaining disk space (224375341056 B)
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | INFO     | update_server=False
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 10:27:04] 2026-01-11 09:26:30,534 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 10:27:04] 2026-01-11 09:26:30,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 10:27:04] 2026-01-11 09:26:30,728 | INFO     | aborting loop
[2026-01-11 10:27:04] 2026-01-11 09:26:30,765 | INFO     | all payload control threads have been joined
[2026-01-11 10:27:04] 2026-01-11 09:26:30,866 | INFO     | all data control threads have been joined
[2026-01-11 10:27:04] 2026-01-11 09:26:31,539 | INFO     | [job] retrieve thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:31,540 | INFO     | [job] queue monitor thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:31,605 | INFO     | [payload] failed_post thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:31,611 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:31,673 | INFO     | all job control threads have been joined
[2026-01-11 10:27:04] 2026-01-11 09:26:31,713 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:31,733 | INFO     | [job] job monitor thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:31,770 | INFO     | [payload] control thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:31,872 | INFO     | [data] control thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:31,960 | INFO     | [data] copytool_in thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:32,240 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:32,540 | INFO     | [data] copytool_out thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:32,679 | INFO     | [job] control thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:32,980 | INFO     | [payload] validate_post thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:33,014 | INFO     | [job] validate thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:33,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 10:27:04] 2026-01-11 09:26:37,453 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:41,055 | INFO     | job.realtimelogging is not enabled
[2026-01-11 10:27:04] 2026-01-11 09:26:42,061 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 10:27:04] 2026-01-11 09:26:58,451 | INFO     | [monitor] cgroup control has ended
[2026-01-11 10:27:04] 2026-01-11 09:26:58,814 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701190653760)>', '<ExcThread(monitor, started 140700536514304)>']
[2026-01-11 10:27:04] 2026-01-11 09:26:59,674 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 10:27:04] 2026-01-11 09:26:59,674 | INFO     | [monitor] control thread has ended
[2026-01-11 10:27:04] 2026-01-11 09:27:03,839 | INFO     | all workflow threads have been joined
[2026-01-11 10:27:04] 2026-01-11 09:27:03,840 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 10:27:04] 2026-01-11 09:27:03,840 | INFO     | traces error code: 0
[2026-01-11 10:27:04] 2026-01-11 09:27:03,841 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 10:27:04] 2026-01-11 09:27:03,906 [wrapper] ==== pilot stdout END ====
[2026-01-11 10:27:04] 2026-01-11 09:27:03,910 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 10:27:04] 2026-01-11 09:27:03,914 [wrapper] pilotpid: 1207647
[2026-01-11 10:27:04] 2026-01-11 09:27:03,917 [wrapper] Pilot exit status: 0
[2026-01-11 10:27:04] 2026-01-11 09:27:03,929 [wrapper] pandaids: 6963188501
[2026-01-11 10:27:04] 2026-01-11 09:27:03,951 [wrapper] cleanup supervisor_pilot 1226493 1207648
[2026-01-11 10:27:04] 2026-01-11 09:27:03,954 [wrapper] Test setup, not cleaning
[2026-01-11 10:27:04] 2026-01-11 09:27:03,958 [wrapper] apfmon messages muted
[2026-01-11 10:27:04] 2026-01-11 09:27:03,961 [wrapper] ==== wrapper stdout END ====
[2026-01-11 10:27:04] 2026-01-11 09:27:03,965 [wrapper] ==== wrapper stderr END ====
[2026-01-11 10:27:04]  *** Error codes and diagnostics ***
[2026-01-11 10:27:04]     "exeErrorCode": 0,
[2026-01-11 10:27:04]     "exeErrorDiag": "",
[2026-01-11 10:27:04]     "pilotErrorCode": 0,
[2026-01-11 10:27:04]     "pilotErrorDiag": "",
[2026-01-11 10:27:04]  *** Listing of results directory ***
[2026-01-11 10:27:04] total 445816
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-11 10:27:04] -rwx------ 1 boinc boinc     36322 Jan  9 05:25 runpilot2-wrapper.sh
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:29 queuedata.json
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc       100 Jan 11 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 10:27:04] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 08:48 run_atlas
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc       105 Jan 11 08:48 job.xml
[2026-01-11 10:27:04] -rw-r--r-- 2 boinc boinc 226520786 Jan 11 08:48 EVNT.47898824._001442.pool.root.1
[2026-01-11 10:27:04] -rw-r--r-- 2 boinc boinc    592402 Jan 11 08:48 input.tar.gz
[2026-01-11 10:27:04] -rw-r--r-- 2 boinc boinc     15847 Jan 11 08:48 start_atlas.sh
[2026-01-11 10:27:04] drwxrwx--x 2 boinc boinc      4096 Jan 11 08:48 shared
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc         0 Jan 11 08:48 boinc_setup_complete
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc      6371 Jan 11 08:48 init_data.xml
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc         0 Jan 11 08:48 boinc_lockfile
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc      2520 Jan 11 08:48 pandaJob.out
[2026-01-11 10:27:04] -rw------- 1 boinc boinc    989548 Jan 11 08:48 agis_schedconf.cvmfs.json
[2026-01-11 10:27:04] -rw------- 1 boinc boinc   1516240 Jan 11 08:48 agis_ddmendpoints.agis.ALL.json
[2026-01-11 10:27:04] drwx------ 5 boinc boinc      4096 Jan 11 08:48 pilot3
[2026-01-11 10:27:04] -rw------- 1 boinc boinc 223819893 Jan 11 10:25 HITS.47898826._037588.pool.root.1
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc       529 Jan 11 10:26 boinc_task_state.xml
[2026-01-11 10:27:04] -rw------- 1 boinc boinc      1020 Jan 11 10:26 memory_monitor_summary.json
[2026-01-11 10:27:04] -rw------- 1 boinc boinc    284560 Jan 11 10:26 log.47898826._037588.job.log.tgz.1
[2026-01-11 10:27:04] -rw------- 1 boinc boinc        95 Jan 11 10:26 pilot_heartbeat.json
[2026-01-11 10:27:04] -rw------- 1 boinc boinc      7760 Jan 11 10:26 heartbeat.json
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc        27 Jan 11 10:26 wrapper_checkpoint.txt
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc      8192 Jan 11 10:26 boinc_mmap_file
[2026-01-11 10:27:04] -rw------- 1 boinc boinc      4628 Jan 11 10:27 pilotlog.txt
[2026-01-11 10:27:04] -rw------- 1 boinc boinc    851604 Jan 11 10:27 log.47898826._037588.job.log.1
[2026-01-11 10:27:04] -rw------- 1 boinc boinc       357 Jan 11 10:27 output.list
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc       620 Jan 11 10:27 runtime_log
[2026-01-11 10:27:04] -rw------- 1 boinc boinc   1157120 Jan 11 10:27 result.tar.gz
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc      8902 Jan 11 10:27 runtime_log.err
[2026-01-11 10:27:04] -rw------- 1 boinc boinc       660 Jan 11 10:27 9NRNDm8EJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmv8gKDmg6xwNm.diag
[2026-01-11 10:27:04] -rw-r--r-- 1 boinc boinc     10828 Jan 11 10:27 stderr.txt
[2026-01-11 10:27:04] HITS file was successfully produced:
[2026-01-11 10:27:04] -rw------- 1 boinc boinc 223819893 Jan 11 10:25 shared/HITS.pool.root.1
[2026-01-11 10:27:04]  *** Contents of shared directory: ***
[2026-01-11 10:27:04] total 441524
[2026-01-11 10:27:04] -rw-r--r-- 2 boinc boinc 226520786 Jan 11 08:48 ATLAS.root_0
[2026-01-11 10:27:04] -rw-r--r-- 2 boinc boinc    592402 Jan 11 08:48 input.tar.gz
[2026-01-11 10:27:04] -rw-r--r-- 2 boinc boinc     15847 Jan 11 08:48 start_atlas.sh
[2026-01-11 10:27:04] -rw------- 1 boinc boinc 223819893 Jan 11 10:25 HITS.pool.root.1
[2026-01-11 10:27:04] -rw------- 1 boinc boinc   1157120 Jan 11 10:27 result.tar.gz
10:27:05 (1203833): run_atlas exited; CPU time 22413.553994
10:27:05 (1203833): called boinc_finish(0)

</stderr_txt>
]]>

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