Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
00:56:59 (191418): wrapper (7.7.26015): starting
00:56:59 (191418): wrapper: running run_atlas (--nthreads 6)
[2026-01-10 00:56:59] Arguments: --nthreads 6
[2026-01-10 00:56:59] Threads: 6
[2026-01-10 00:56:59] Checking for CVMFS
[2026-01-10 00:56:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:56:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:56:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:56:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:56:59] 2.11.5.0 8601 176 48880 154961 3 188 3676718 4194305 1836 130560 0 403710 99.990 11161 593 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2026-01-10 00:56:59] CVMFS is ok
[2026-01-10 00:56:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:56:59] Checking for apptainer binary...
[2026-01-10 00:56:59] apptainer is not installed, using version from CVMFS
[2026-01-10 00:56:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:57:00] boinc-b450f
[2026-01-10 00:57:00] apptainer works
[2026-01-10 00:57:00] Set ATHENA_PROC_NUMBER=6
[2026-01-10 00:57:00] Set ATHENA_CORE_NUMBER=6
[2026-01-10 00:57:00] Starting ATLAS job with PandaID=6963188517
[2026-01-10 00:57:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 02:41:29]  *** The last 200 lines of the pilot log: ***
[2026-01-10 02:41:29] 2026-01-10 01:40:44,882 | INFO     | time since job start (6210s) is within the limit (349056.0s)
[2026-01-10 02:41:29] 2026-01-10 01:40:45,739 | INFO     | monitor loop #475: job 0:6963188517 is in state 'finished'
[2026-01-10 02:41:29] 2026-01-10 01:40:45,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 02:41:29] 2026-01-10 01:40:46,883 | INFO     | time since job start (6212s) is within the limit (349056.0s)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,242 | INFO     | monitor loop #476: job 0:6963188517 is in state 'finished'
[2026-01-10 02:41:29] 2026-01-10 01:40:48,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,628 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 02:41:29] 2026-01-10 01:40:48,630 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3922.6418333333327
[2026-01-10 02:41:29] 2026-01-10 01:40:48,633 | INFO     | using path: /var/lib/boinc-client/slots/11/PanDA_Pilot-6963188517/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,633 | INFO     | extracted standard info from prmon json
[2026-01-10 02:41:29] 2026-01-10 01:40:48,633 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 02:41:29] 2026-01-10 01:40:48,633 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 02:41:29] 2026-01-10 01:40:48,634 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 02:41:29] 2026-01-10 01:40:48,634 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 02:41:29] 2026-01-10 01:40:48,635 | INFO     | fitting pss+swap vs Time
[2026-01-10 02:41:29] 2026-01-10 01:40:48,635 | INFO     | sum of square deviations: 329031285.5
[2026-01-10 02:41:29] 2026-01-10 01:40:48,636 | INFO     | sum of deviations: 4619192487.0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,636 | INFO     | mean x: 1768006134.5
[2026-01-10 02:41:29] 2026-01-10 01:40:48,636 | INFO     | mean y: 2415965.8039215687
[2026-01-10 02:41:29] 2026-01-10 01:40:48,636 | INFO     | intersect: -24818204483.835087
[2026-01-10 02:41:29] 2026-01-10 01:40:48,636 | INFO     | chi2: 1.2179605163227432
[2026-01-10 02:41:29] 2026-01-10 01:40:48,636 | INFO     | sum of square deviations: 282974608.0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,637 | INFO     | sum of deviations: 4304500563.0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,637 | INFO     | mean x: 1768005982.0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,637 | INFO     | mean y: 2414940.474226804
[2026-01-10 02:41:29] 2026-01-10 01:40:48,637 | INFO     | intersect: -26891809946.6802
[2026-01-10 02:41:29] 2026-01-10 01:40:48,637 | INFO     | chi2: 1.2194674210706316
[2026-01-10 02:41:29] 2026-01-10 01:40:48,637 | INFO     | current chi2=1.2194674210706316 (change=-0.12372361235797925 %)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,637 | INFO     | right removable region: 96
[2026-01-10 02:41:29] 2026-01-10 01:40:48,637 | INFO     | sum of square deviations: 282974608.0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,638 | INFO     | sum of deviations: -5845211234.999998
[2026-01-10 02:41:29] 2026-01-10 01:40:48,638 | INFO     | mean x: 1768006287.0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,638 | INFO     | mean y: 2449483.7010309277
[2026-01-10 02:41:29] 2026-01-10 01:40:48,638 | INFO     | intersect: 36522935492.54827
[2026-01-10 02:41:29] 2026-01-10 01:40:48,638 | INFO     | chi2: 0.04678849167440036
[2026-01-10 02:41:29] 2026-01-10 01:40:48,638 | INFO     | current chi2=0.04678849167440036 (change=96.15845579168167 %)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,638 | INFO     | sum of square deviations: 241429643.0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,639 | INFO     | sum of deviations: -3868303013.5000005
[2026-01-10 02:41:29] 2026-01-10 01:40:48,639 | INFO     | mean x: 1768006439.5
[2026-01-10 02:41:29] 2026-01-10 01:40:48,639 | INFO     | mean y: 2442204.054347826
[2026-01-10 02:41:29] 2026-01-10 01:40:48,639 | INFO     | intersect: 28330300178.83194
[2026-01-10 02:41:29] 2026-01-10 01:40:48,639 | INFO     | chi2: 0.04121948429070288
[2026-01-10 02:41:29] 2026-01-10 01:40:48,639 | INFO     | current chi2=0.04121948429070288 (change=11.902515307507732 %)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,639 | INFO     | left removable region: 20
[2026-01-10 02:41:29] 2026-01-10 01:40:48,639 | INFO     | sum of square deviations: 136095575.0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,640 | INFO     | sum of deviations: 330836062.0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,640 | INFO     | mean x: 1768006561.5
[2026-01-10 02:41:29] 2026-01-10 01:40:48,640 | INFO     | mean y: 2422593.8421052634
[2026-01-10 02:41:29] 2026-01-10 01:40:48,640 | INFO     | intersect: -4295441817.964236
[2026-01-10 02:41:29] 2026-01-10 01:40:48,640 | INFO     | chi2: 0.00015714810299922443
[2026-01-10 02:41:29] 2026-01-10 01:40:48,640 | INFO     | current memory leak: 2.43 B/s (using 76 data points, chi2=0.00)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,640 | INFO     | could have reported an average CPU frequency of 3838 MHz (7 samples)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,641 | INFO     | ..............................
[2026-01-10 02:41:29] 2026-01-10 01:40:48,641 | INFO     | . Timing measurements:
[2026-01-10 02:41:29] 2026-01-10 01:40:48,641 | INFO     | . get job = 0 s
[2026-01-10 02:41:29] 2026-01-10 01:40:48,641 | INFO     | . initial setup = 1 s
[2026-01-10 02:41:29] 2026-01-10 01:40:48,641 | INFO     | . payload setup = 3 s
[2026-01-10 02:41:29] 2026-01-10 01:40:48,641 | INFO     | . stage-in = 0 s
[2026-01-10 02:41:29] 2026-01-10 01:40:48,641 | INFO     | . payload execution = 6184 s
[2026-01-10 02:41:29] 2026-01-10 01:40:48,641 | INFO     | . stage-out = 0 s
[2026-01-10 02:41:29] 2026-01-10 01:40:48,641 | INFO     | . log creation = 0 s
[2026-01-10 02:41:29] 2026-01-10 01:40:48,641 | INFO     | ..............................
[2026-01-10 02:41:29] 2026-01-10 01:40:48,704 | INFO     | 
[2026-01-10 02:41:29] 2026-01-10 01:40:48,704 | INFO     | job summary report
[2026-01-10 02:41:29] 2026-01-10 01:40:48,704 | INFO     | --------------------------------------------------
[2026-01-10 02:41:29] 2026-01-10 01:40:48,704 | INFO     | PanDA job id: 6963188517
[2026-01-10 02:41:29] 2026-01-10 01:40:48,704 | INFO     | task id: 47898826
[2026-01-10 02:41:29] 2026-01-10 01:40:48,704 | INFO     | errors: (none)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,704 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 02:41:29] 2026-01-10 01:40:48,704 | INFO     | pilot state: finished 
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | transexitcode: 0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | exeerrorcode: 0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | exeerrordiag: 
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | exitcode: 0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | exitmsg: OK
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | cpuconsumptiontime: 35855 s
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | nevents: 400
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | neventsw: 0
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | pid: 203012
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | pgrp: 203012
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | corecount: 6
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | event service: False
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | sizes: {0: 2283979, 2: 2284241, 11: 2284269, 6190: 2311386, 6191: 2320400, 6195: 2320456, 6201: 2320778}
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | --------------------------------------------------
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | 
[2026-01-10 02:41:29] 2026-01-10 01:40:48,705 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/11
[2026-01-10 02:41:29] 2026-01-10 01:40:48,711 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,711 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,711 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,711 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,713 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,713 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,713 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 02:41:29] 2026-01-10 01:40:48,713 | INFO     | job 6963188517 has completed (purged errors)
[2026-01-10 02:41:29] 2026-01-10 01:40:48,713 | INFO     | overall cleanup function is called
[2026-01-10 02:41:29] 2026-01-10 01:40:49,719 | INFO     | --- collectZombieJob: --- 10, [203012]
[2026-01-10 02:41:29] 2026-01-10 01:40:49,719 | INFO     | zombie collector waiting for pid 203012
[2026-01-10 02:41:29] 2026-01-10 01:40:49,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 02:41:29] 2026-01-10 01:40:49,719 | INFO     | collected zombie processes
[2026-01-10 02:41:29] 2026-01-10 01:40:49,719 | INFO     | will attempt to kill all subprocesses of pid=203012
[2026-01-10 02:41:29] 2026-01-10 01:40:49,802 | INFO     | process IDs to be killed: [203012] (in reverse order)
[2026-01-10 02:41:29] 2026-01-10 01:40:49,826 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 02:41:29] 2026-01-10 01:40:49,826 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 02:41:29] 2026-01-10 01:40:49,828 | INFO     | did not find any defunct processes belonging to 203012
[2026-01-10 02:41:29] 2026-01-10 01:40:49,829 | INFO     | did not find any defunct processes belonging to 203012
[2026-01-10 02:41:29] 2026-01-10 01:40:49,830 | INFO     | ready for new job
[2026-01-10 02:41:29] 2026-01-10 01:40:49,830 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 02:41:29] 2026-01-10 01:40:49,830 | INFO     | ***************************************
[2026-01-10 02:41:29] 2026-01-10 01:40:49,830 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 02:41:29] 2026-01-10 01:40:49,830 | INFO     | ***************************************
[2026-01-10 02:41:29] 2026-01-10 01:40:49,830 | INFO     | 
[2026-01-10 02:41:29] 2026-01-10 01:40:49,831 | INFO     | architecture information:
[2026-01-10 02:41:29] 2026-01-10 01:40:49,831 | INFO     | executing command: cat /etc/os-release
[2026-01-10 02:41:29] 2026-01-10 01:40:49,837 | INFO     | cat /etc/os-release:
[2026-01-10 02:41:29] NAME="CentOS Linux"
[2026-01-10 02:41:29] VERSION="7 (Core)"
[2026-01-10 02:41:29] ID="centos"
[2026-01-10 02:41:29] ID_LIKE="rhel fedora"
[2026-01-10 02:41:29] VERSION_ID="7"
[2026-01-10 02:41:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 02:41:29] ANSI_COLOR="0;31"
[2026-01-10 02:41:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 02:41:29] HOME_URL="https://www.centos.org/"
[2026-01-10 02:41:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 02:41:29] 
[2026-01-10 02:41:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 02:41:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 02:41:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 02:41:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 02:41:29] 
[2026-01-10 02:41:29] 2026-01-10 01:40:49,837 | INFO     | ***************************************
[2026-01-10 02:41:29] 2026-01-10 01:40:50,340 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/11
[2026-01-10 02:41:29] 2026-01-10 01:40:50,347 | INFO     | sufficient remaining disk space (21261975552 B)
[2026-01-10 02:41:29] 2026-01-10 01:40:50,347 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 02:41:29] 2026-01-10 01:40:50,347 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 02:41:29] 2026-01-10 01:40:50,347 | INFO     | update_server=False
[2026-01-10 02:41:29] 2026-01-10 01:40:50,348 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 02:41:29] 2026-01-10 01:40:50,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:41:29] 2026-01-10 01:40:50,496 | INFO     | all payload control threads have been joined
[2026-01-10 02:41:29] 2026-01-10 01:40:50,743 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 02:41:29] 2026-01-10 01:40:50,743 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 02:41:29] 2026-01-10 01:40:50,743 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:41:29] 2026-01-10 01:40:50,743 | INFO     | will abort loop
[2026-01-10 02:41:29] 2026-01-10 01:40:50,899 | INFO     | all job control threads have been joined
[2026-01-10 02:41:29] 2026-01-10 01:40:50,999 | INFO     | all data control threads have been joined
[2026-01-10 02:41:29] 2026-01-10 01:40:51,352 | INFO     | [job] retrieve thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:51,352 | INFO     | [job] queue monitor thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:51,421 | INFO     | [data] copytool_in thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:51,497 | INFO     | [payload] control thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:51,748 | INFO     | [job] job monitor thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:51,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 02:41:29] 2026-01-10 01:40:51,902 | INFO     | [job] control thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:51,994 | INFO     | [payload] validate_post thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:52,002 | INFO     | [data] control thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:52,462 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:52,612 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:52,642 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:52,667 | INFO     | [job] validate thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:52,778 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 02:41:29] 2026-01-10 01:40:52,792 | INFO     | [payload] failed_post thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:53,812 | INFO     | [data] copytool_out thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:40:56,782 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:41:00,802 | INFO     | job.realtimelogging is not enabled
[2026-01-10 02:41:29] 2026-01-10 01:41:01,807 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 02:41:29] 2026-01-10 01:41:20,002 | INFO     | PID=195883 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 02:41:29] 2026-01-10 01:41:20,002 | INFO     | .. there are 2 such processes running
[2026-01-10 02:41:29] 2026-01-10 01:41:20,003 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 02:41:29] 2026-01-10 01:41:20,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 02:41:29] 2026-01-10 01:41:20,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 02:41:29] 2026-01-10 01:41:23,952 | INFO     | [monitor] cgroup control has ended
[2026-01-10 02:41:29] 2026-01-10 01:41:24,017 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139835405276992)>', '<ExcThread(monitor, started 139834597304064)>']
[2026-01-10 02:41:29] 2026-01-10 01:41:24,022 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 02:41:29] 2026-01-10 01:41:24,022 | INFO     | [monitor] control thread has ended
[2026-01-10 02:41:29] 2026-01-10 01:41:29,042 | INFO     | all workflow threads have been joined
[2026-01-10 02:41:29] 2026-01-10 01:41:29,042 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 02:41:29] 2026-01-10 01:41:29,042 | INFO     | traces error code: 0
[2026-01-10 02:41:29] 2026-01-10 01:41:29,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 02:41:29] 2026-01-10 01:41:29,095 [wrapper] ==== pilot stdout END ====
[2026-01-10 02:41:29] 2026-01-10 01:41:29,097 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 02:41:29] 2026-01-10 01:41:29,098 [wrapper] pilotpid: 195883
[2026-01-10 02:41:29] 2026-01-10 01:41:29,099 [wrapper] Pilot exit status: 0
[2026-01-10 02:41:29] 2026-01-10 01:41:29,102 [wrapper] pandaids: 6963188517
[2026-01-10 02:41:29] 2026-01-10 01:41:29,116 [wrapper] cleanup supervisor_pilot  277696 195884
[2026-01-10 02:41:29] 2026-01-10 01:41:29,118 [wrapper] Test setup, not cleaning
[2026-01-10 02:41:29] 2026-01-10 01:41:29,119 [wrapper] apfmon messages muted
[2026-01-10 02:41:29] 2026-01-10 01:41:29,120 [wrapper] ==== wrapper stdout END ====
[2026-01-10 02:41:29] 2026-01-10 01:41:29,121 [wrapper] ==== wrapper stderr END ====
[2026-01-10 02:41:29]  *** Error codes and diagnostics ***
[2026-01-10 02:41:29]     "exeErrorCode": 0,
[2026-01-10 02:41:29]     "exeErrorDiag": "",
[2026-01-10 02:41:29]     "pilotErrorCode": 0,
[2026-01-10 02:41:29]     "pilotErrorDiag": "",
[2026-01-10 02:41:29]  *** Listing of results directory ***
[2026-01-10 02:41:29] total 435963
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 02:41:29] -rwx------ 1 boinc boinc     36322 Jan  9 05:25 runpilot2-wrapper.sh
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:29 queuedata.json
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc       100 Jan 10 00:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 02:41:29] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 00:56 run_atlas
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc       105 Jan 10 00:56 job.xml
[2026-01-10 02:41:29] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:56 start_atlas.sh
[2026-01-10 02:41:29] drwxrwx--x 2 boinc boinc         5 Jan 10 00:56 shared
[2026-01-10 02:41:29] -rw-r--r-- 2 boinc boinc    592399 Jan 10 00:56 input.tar.gz
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc      6796 Jan 10 00:56 init_data.xml
[2026-01-10 02:41:29] -rw-r--r-- 2 boinc boinc 224821519 Jan 10 00:56 EVNT.47898824._001443.pool.root.1
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:56 boinc_lockfile
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc      2520 Jan 10 00:57 pandaJob.out
[2026-01-10 02:41:29] -rw------- 1 boinc boinc        56 Jan 10 00:57 setup.sh.local
[2026-01-10 02:41:29] -rw------- 1 boinc boinc    989374 Jan 10 00:57 agis_schedconf.cvmfs.json
[2026-01-10 02:41:29] -rw------- 1 boinc boinc   1516240 Jan 10 00:57 agis_ddmendpoints.agis.ALL.json
[2026-01-10 02:41:29] drwx------ 5 boinc boinc        22 Jan 10 00:57 pilot3
[2026-01-10 02:41:29] -rw------- 1 boinc boinc 219558859 Jan 10 02:40 HITS.47898826._037604.pool.root.1
[2026-01-10 02:41:29] -rw------- 1 boinc boinc      1028 Jan 10 02:40 memory_monitor_summary.json
[2026-01-10 02:41:29] -rw------- 1 boinc boinc    314233 Jan 10 02:40 log.47898826._037604.job.log.tgz.1
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc       529 Jan 10 02:40 boinc_task_state.xml
[2026-01-10 02:41:29] -rw------- 1 boinc boinc      7749 Jan 10 02:40 heartbeat.json
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc      8192 Jan 10 02:41 boinc_mmap_file
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc        27 Jan 10 02:41 wrapper_checkpoint.txt
[2026-01-10 02:41:29] -rw------- 1 boinc boinc        95 Jan 10 02:41 pilot_heartbeat.json
[2026-01-10 02:41:29] -rw------- 1 boinc boinc      5088 Jan 10 02:41 pilotlog.txt
[2026-01-10 02:41:29] -rw------- 1 boinc boinc    924716 Jan 10 02:41 log.47898826._037604.job.log.1
[2026-01-10 02:41:29] -rw------- 1 boinc boinc       357 Jan 10 02:41 output.list
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc      9482 Jan 10 02:41 runtime_log.err
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc       620 Jan 10 02:41 runtime_log
[2026-01-10 02:41:29] -rw------- 1 boinc boinc   1259520 Jan 10 02:41 result.tar.gz
[2026-01-10 02:41:29] -rw------- 1 boinc boinc       658 Jan 10 02:41 4odNDm8EJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm48gKDmLGVNvm.diag
[2026-01-10 02:41:29] -rw-r--r-- 1 boinc boinc     20978 Jan 10 02:41 stderr.txt
[2026-01-10 02:41:29] HITS file was successfully produced:
[2026-01-10 02:41:29] -rw------- 1 boinc boinc 219558859 Jan 10 02:40 shared/HITS.pool.root.1
[2026-01-10 02:41:29]  *** Contents of shared directory: ***
[2026-01-10 02:41:29] total 434829
[2026-01-10 02:41:29] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:56 start_atlas.sh
[2026-01-10 02:41:29] -rw-r--r-- 2 boinc boinc    592399 Jan 10 00:56 input.tar.gz
[2026-01-10 02:41:29] -rw-r--r-- 2 boinc boinc 224821519 Jan 10 00:56 ATLAS.root_0
[2026-01-10 02:41:29] -rw------- 1 boinc boinc 219558859 Jan 10 02:40 HITS.pool.root.1
[2026-01-10 02:41:29] -rw------- 1 boinc boinc   1259520 Jan 10 02:41 result.tar.gz
02:41:30 (191418): run_atlas exited; CPU time 35935.971579
02:41:30 (191418): called boinc_finish(0)

</stderr_txt>
]]>

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