Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:16:44 (310151): wrapper (7.7.26015): starting
18:16:44 (310151): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 18:16:44] Arguments: --nthreads 4
[2026-01-10 18:16:44] Threads: 4
[2026-01-10 18:16:44] Checking for CVMFS
[2026-01-10 18:16:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:16:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:16:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:16:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:16:44] 2.9.2.0 3022 1345 85308 154987 2 56 18617341 36864001 0 130560 0 812340 99.982 52223 2103 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 18:16:44] CVMFS is ok
[2026-01-10 18:16:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:16:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:16:44] Further information can be found at the LHC@home message board.
[2026-01-10 18:16:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:16:44] Checking for apptainer binary...
[2026-01-10 18:16:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:16:44] Running /usr/bin/apptainer --version
[2026-01-10 18:16:44] apptainer version 1.4.1-1.1
[2026-01-10 18:16:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:16:44] iaxoA393
[2026-01-10 18:16:44] apptainer works
[2026-01-10 18:16:44] Set ATHENA_PROC_NUMBER=4
[2026-01-10 18:16:44] Set ATHENA_CORE_NUMBER=4
[2026-01-10 18:16:44] Starting ATLAS job with PandaID=6963676822
[2026-01-10 18:16:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:55:04]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | job 6963676822 has completed (purged errors)
[2026-01-10 19:55:04] 2026-01-10 18:54:29,658 | INFO     | overall cleanup function is called
[2026-01-10 19:55:04] 2026-01-10 18:54:30,663 | INFO     | --- collectZombieJob: --- 10, [320523]
[2026-01-10 19:55:04] 2026-01-10 18:54:30,664 | INFO     | zombie collector waiting for pid 320523
[2026-01-10 19:55:04] 2026-01-10 18:54:30,664 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:55:04] 2026-01-10 18:54:30,664 | INFO     | collected zombie processes
[2026-01-10 19:55:04] 2026-01-10 18:54:30,664 | INFO     | will attempt to kill all subprocesses of pid=320523
[2026-01-10 19:55:04] 2026-01-10 18:54:30,707 | INFO     | process IDs to be killed: [320523] (in reverse order)
[2026-01-10 19:55:04] 2026-01-10 18:54:30,737 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:55:04] 2026-01-10 18:54:30,737 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:55:04] 2026-01-10 18:54:30,739 | INFO     | did not find any defunct processes belonging to 320523
[2026-01-10 19:55:04] 2026-01-10 18:54:30,740 | INFO     | did not find any defunct processes belonging to 320523
[2026-01-10 19:55:04] 2026-01-10 18:54:30,740 | INFO     | ready for new job
[2026-01-10 19:55:04] 2026-01-10 18:54:30,740 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:55:04] 2026-01-10 18:54:30,741 | INFO     | ***************************************
[2026-01-10 19:55:04] 2026-01-10 18:54:30,741 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:55:04] 2026-01-10 18:54:30,741 | INFO     | ***************************************
[2026-01-10 19:55:04] 2026-01-10 18:54:30,741 | INFO     | 
[2026-01-10 19:55:04] 2026-01-10 18:54:30,741 | INFO     | architecture information:
[2026-01-10 19:55:04] 2026-01-10 18:54:30,742 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:55:04] 2026-01-10 18:54:30,754 | INFO     | cat /etc/os-release:
[2026-01-10 19:55:04] NAME="CentOS Linux"
[2026-01-10 19:55:04] VERSION="7 (Core)"
[2026-01-10 19:55:04] ID="centos"
[2026-01-10 19:55:04] ID_LIKE="rhel fedora"
[2026-01-10 19:55:04] VERSION_ID="7"
[2026-01-10 19:55:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:55:04] ANSI_COLOR="0;31"
[2026-01-10 19:55:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:55:04] HOME_URL="https://www.centos.org/"
[2026-01-10 19:55:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:55:04] 
[2026-01-10 19:55:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:55:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:55:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:55:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:55:04] 
[2026-01-10 19:55:04] 2026-01-10 18:54:30,755 | INFO     | ***************************************
[2026-01-10 19:55:04] 2026-01-10 18:54:31,258 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 19:55:04] 2026-01-10 18:54:31,273 | INFO     | sufficient remaining disk space (342739648512 B)
[2026-01-10 19:55:04] 2026-01-10 18:54:31,273 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:55:04] 2026-01-10 18:54:31,274 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:55:04] 2026-01-10 18:54:31,274 | INFO     | update_server=False
[2026-01-10 19:55:04] 2026-01-10 18:54:31,274 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:55:04] 2026-01-10 18:54:31,274 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:55:04] 2026-01-10 18:54:31,274 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:55:04] 2026-01-10 18:54:31,524 | INFO     | all data control threads have been joined
[2026-01-10 19:55:04] 2026-01-10 18:54:31,923 | INFO     | all payload control threads have been joined
[2026-01-10 19:55:04] 2026-01-10 18:54:32,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:55:04] 2026-01-10 18:54:32,214 | INFO     | aborting loop
[2026-01-10 19:55:04] 2026-01-10 18:54:32,279 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:32,280 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:32,298 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:32,378 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:32,530 | INFO     | [data] control thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:32,603 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:32,677 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:32,681 | INFO     | all job control threads have been joined
[2026-01-10 19:55:04] 2026-01-10 18:54:32,929 | INFO     | [payload] control thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:33,220 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:33,242 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:33,280 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:33,583 | INFO     | [job] validate thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:33,605 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:33,686 | INFO     | [job] control thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:33,781 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:34,139 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:55:04] 2026-01-10 18:54:38,145 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:55:04] 2026-01-10 18:54:58,735 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:55:04] 2026-01-10 18:54:59,662 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139855190976320)>', '<ExcThread(monitor, started 139854235023104)>']
[2026-01-10 19:55:04] 2026-01-10 18:55:01,177 | INFO     | PID=313949 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 19:55:04] 2026-01-10 18:55:01,177 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:55:04] 2026-01-10 18:55:01,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:55:04] 2026-01-10 18:55:01,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:55:04] 2026-01-10 18:55:01,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:55:04] 2026-01-10 18:55:01,177 | INFO     | [monitor] control thread has ended
[2026-01-10 19:55:04] 2026-01-10 18:55:04,663 | INFO     | all workflow threads have been joined
[2026-01-10 19:55:04] 2026-01-10 18:55:04,663 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:55:04] 2026-01-10 18:55:04,663 | INFO     | traces error code: 0
[2026-01-10 19:55:04] 2026-01-10 18:55:04,663 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:55:04] 2026-01-10 18:55:04,729 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:55:04] 2026-01-10 18:55:04,732 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:55:04] 2026-01-10 18:55:04,736 [wrapper] pilotpid: 313949
[2026-01-10 19:55:04] 2026-01-10 18:55:04,739 [wrapper] Pilot exit status: 0
[2026-01-10 19:55:04] 2026-01-10 18:55:04,750 [wrapper] pandaids: 6963676822
[2026-01-10 19:55:04] 2026-01-10 18:55:04,770 [wrapper] cleanup supervisor_pilot  332770 313950
[2026-01-10 19:55:04] 2026-01-10 18:55:04,774 [wrapper] Test setup, not cleaning
[2026-01-10 19:55:04] 2026-01-10 18:55:04,777 [wrapper] apfmon messages muted
[2026-01-10 19:55:04] 2026-01-10 18:55:04,780 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:55:04] 2026-01-10 18:55:04,783 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:55:04]  *** Error codes and diagnostics ***
[2026-01-10 19:55:04]     "exeErrorCode": 0,
[2026-01-10 19:55:04]     "exeErrorDiag": "",
[2026-01-10 19:55:04]     "pilotErrorCode": 0,
[2026-01-10 19:55:04]     "pilotErrorDiag": "",
[2026-01-10 19:55:04]  *** Listing of results directory ***
[2026-01-10 19:55:04] total 438748
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 19:55:04] -rwx------ 1 boinc boinc     36322 Jan  9 05:23 runpilot2-wrapper.sh
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:26 queuedata.json
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc       100 Jan 10 18:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:55:04] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 18:16 run_atlas
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc       105 Jan 10 18:16 job.xml
[2026-01-10 19:55:04] -rw-r--r-- 2 boinc boinc 224685721 Jan 10 18:16 EVNT.47898824._000858.pool.root.1
[2026-01-10 19:55:04] -rw-r--r-- 2 boinc boinc    592400 Jan 10 18:16 input.tar.gz
[2026-01-10 19:55:04] -rw-r--r-- 2 boinc boinc     15847 Jan 10 18:16 start_atlas.sh
[2026-01-10 19:55:04] drwxrwx--x 2 boinc boinc      4096 Jan 10 18:16 shared
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc         0 Jan 10 18:16 boinc_setup_complete
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc      6371 Jan 10 18:16 init_data.xml
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc         0 Jan 10 18:16 boinc_lockfile
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc      2519 Jan 10 18:16 pandaJob.out
[2026-01-10 19:55:04] -rw------- 1 boinc boinc    989548 Jan 10 18:16 agis_schedconf.cvmfs.json
[2026-01-10 19:55:04] -rw------- 1 boinc boinc   1516240 Jan 10 18:16 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:55:04] drwx------ 5 boinc boinc      4096 Jan 10 18:16 pilot3
[2026-01-10 19:55:04] -rw------- 1 boinc boinc 218394747 Jan 10 19:54 HITS.47898826._039713.pool.root.1
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc       529 Jan 10 19:54 boinc_task_state.xml
[2026-01-10 19:55:04] -rw------- 1 boinc boinc      1025 Jan 10 19:54 memory_monitor_summary.json
[2026-01-10 19:55:04] -rw------- 1 boinc boinc        95 Jan 10 19:54 pilot_heartbeat.json
[2026-01-10 19:55:04] -rw------- 1 boinc boinc    297251 Jan 10 19:54 log.47898826._039713.job.log.tgz.1
[2026-01-10 19:55:04] -rw------- 1 boinc boinc      7771 Jan 10 19:54 heartbeat.json
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc        27 Jan 10 19:54 wrapper_checkpoint.txt
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc      8192 Jan 10 19:54 boinc_mmap_file
[2026-01-10 19:55:04] -rw------- 1 boinc boinc      4751 Jan 10 19:55 pilotlog.txt
[2026-01-10 19:55:04] -rw------- 1 boinc boinc    850804 Jan 10 19:55 log.47898826._039713.job.log.1
[2026-01-10 19:55:04] -rw------- 1 boinc boinc       357 Jan 10 19:55 output.list
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc       620 Jan 10 19:55 runtime_log
[2026-01-10 19:55:04] -rw------- 1 boinc boinc   1167360 Jan 10 19:55 result.tar.gz
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc      8907 Jan 10 19:55 runtime_log.err
[2026-01-10 19:55:04] -rw------- 1 boinc boinc       661 Jan 10 19:55 1l1MDmHDJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwGmKDmuq0ffm.diag
[2026-01-10 19:55:04] -rw-r--r-- 1 boinc boinc     12128 Jan 10 19:55 stderr.txt
[2026-01-10 19:55:04] HITS file was successfully produced:
[2026-01-10 19:55:04] -rw------- 1 boinc boinc 218394747 Jan 10 19:54 shared/HITS.pool.root.1
[2026-01-10 19:55:04]  *** Contents of shared directory: ***
[2026-01-10 19:55:04] total 434444
[2026-01-10 19:55:04] -rw-r--r-- 2 boinc boinc 224685721 Jan 10 18:16 ATLAS.root_0
[2026-01-10 19:55:04] -rw-r--r-- 2 boinc boinc    592400 Jan 10 18:16 input.tar.gz
[2026-01-10 19:55:04] -rw-r--r-- 2 boinc boinc     15847 Jan 10 18:16 start_atlas.sh
[2026-01-10 19:55:04] -rw------- 1 boinc boinc 218394747 Jan 10 19:54 HITS.pool.root.1
[2026-01-10 19:55:04] -rw------- 1 boinc boinc   1167360 Jan 10 19:55 result.tar.gz
19:55:06 (310151): run_atlas exited; CPU time 22348.686519
19:55:06 (310151): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN