Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:59:17 (1134114): wrapper (7.7.26015): starting
12:59:17 (1134114): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 12:59:17] Arguments: --nthreads 4
[2026-01-10 12:59:17] Threads: 4
[2026-01-10 12:59:17] Checking for CVMFS
[2026-01-10 12:59:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 12:59:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 12:59:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 12:59:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 12:59:18] 2.9.2.0 172682 3516 94756 154978 3 131 22655556 36864001 0 130560 0 2459279 99.989 129169 2977 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 12:59:18] CVMFS is ok
[2026-01-10 12:59:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 12:59:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 12:59:18] Further information can be found at the LHC@home message board.
[2026-01-10 12:59:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 12:59:18] Checking for apptainer binary...
[2026-01-10 12:59:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 12:59:18] Running /usr/bin/apptainer --version
[2026-01-10 12:59:18] apptainer version 1.4.1-1.1
[2026-01-10 12:59:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 12:59:18] thA314a
[2026-01-10 12:59:18] apptainer works
[2026-01-10 12:59:18] Set ATHENA_PROC_NUMBER=4
[2026-01-10 12:59:18] Set ATHENA_CORE_NUMBER=4
[2026-01-10 12:59:18] Starting ATLAS job with PandaID=6963192071
[2026-01-10 12:59:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 14:39:51]  *** The last 200 lines of the pilot log: ***
[2026-01-10 14:39:51] 2026-01-10 13:39:21,161 | INFO     | collected zombie processes
[2026-01-10 14:39:51] 2026-01-10 13:39:21,161 | INFO     | will attempt to kill all subprocesses of pid=1144502
[2026-01-10 14:39:51] 2026-01-10 13:39:21,212 | INFO     | process IDs to be killed: [1144502] (in reverse order)
[2026-01-10 14:39:51] 2026-01-10 13:39:21,248 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 14:39:51] 2026-01-10 13:39:21,248 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 14:39:51] 2026-01-10 13:39:21,250 | INFO     | did not find any defunct processes belonging to 1144502
[2026-01-10 14:39:51] 2026-01-10 13:39:21,252 | INFO     | did not find any defunct processes belonging to 1144502
[2026-01-10 14:39:51] 2026-01-10 13:39:21,252 | INFO     | ready for new job
[2026-01-10 14:39:51] 2026-01-10 13:39:21,252 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 14:39:51] 2026-01-10 13:39:21,252 | INFO     | ***************************************
[2026-01-10 14:39:51] 2026-01-10 13:39:21,252 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 14:39:51] 2026-01-10 13:39:21,252 | INFO     | ***************************************
[2026-01-10 14:39:51] 2026-01-10 13:39:21,252 | INFO     | 
[2026-01-10 14:39:51] 2026-01-10 13:39:21,253 | INFO     | architecture information:
[2026-01-10 14:39:51] 2026-01-10 13:39:21,253 | INFO     | executing command: cat /etc/os-release
[2026-01-10 14:39:51] 2026-01-10 13:39:21,267 | INFO     | cat /etc/os-release:
[2026-01-10 14:39:51] NAME="CentOS Linux"
[2026-01-10 14:39:51] VERSION="7 (Core)"
[2026-01-10 14:39:51] ID="centos"
[2026-01-10 14:39:51] ID_LIKE="rhel fedora"
[2026-01-10 14:39:51] VERSION_ID="7"
[2026-01-10 14:39:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 14:39:51] ANSI_COLOR="0;31"
[2026-01-10 14:39:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 14:39:51] HOME_URL="https://www.centos.org/"
[2026-01-10 14:39:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 14:39:51] 
[2026-01-10 14:39:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 14:39:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 14:39:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 14:39:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 14:39:51] 
[2026-01-10 14:39:51] 2026-01-10 13:39:21,267 | INFO     | ***************************************
[2026-01-10 14:39:51] 2026-01-10 13:39:21,770 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 14:39:51] 2026-01-10 13:39:21,786 | INFO     | sufficient remaining disk space (237713227776 B)
[2026-01-10 14:39:51] 2026-01-10 13:39:21,786 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 14:39:51] 2026-01-10 13:39:21,786 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 14:39:51] 2026-01-10 13:39:21,786 | INFO     | update_server=False
[2026-01-10 14:39:51] 2026-01-10 13:39:21,786 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 14:39:51] 2026-01-10 13:39:21,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:39:51] 2026-01-10 13:39:21,786 | INFO     | aborting loop
[2026-01-10 14:39:51] 2026-01-10 13:39:21,787 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:39:51] 2026-01-10 13:39:22,097 | INFO     | all data control threads have been joined
[2026-01-10 14:39:51] 2026-01-10 13:39:22,174 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 14:39:51] 2026-01-10 13:39:22,201 | INFO     | all payload control threads have been joined
[2026-01-10 14:39:51] 2026-01-10 13:39:22,559 | INFO     | all job control threads have been joined
[2026-01-10 14:39:51] 2026-01-10 13:39:22,792 | INFO     | [job] retrieve thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:22,792 | INFO     | [job] job monitor thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:22,792 | INFO     | [job] queue monitor thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:22,878 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 14:39:51] 2026-01-10 13:39:23,057 | INFO     | [data] copytool_in thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:23,099 | INFO     | [data] control thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:23,180 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:23,207 | INFO     | [payload] control thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:23,565 | INFO     | [job] control thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:23,842 | INFO     | [payload] failed_post thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:24,003 | INFO     | [job] validate thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:24,100 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:24,180 | INFO     | [data] copytool_out thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:24,185 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:24,396 | INFO     | [payload] validate_post thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:26,885 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:32,447 | INFO     | [monitor] cgroup control has ended
[2026-01-10 14:39:51] 2026-01-10 13:39:32,595 | INFO     | job.realtimelogging is not enabled
[2026-01-10 14:39:51] 2026-01-10 13:39:33,601 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 14:39:51] 2026-01-10 13:39:35,658 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140675688683328)>', '<ExcThread(monitor, started 140675035145984)>']
[2026-01-10 14:39:51] 2026-01-10 13:39:40,683 | INFO     | all workflow threads have been joined
[2026-01-10 14:39:51] 2026-01-10 13:39:40,684 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 14:39:51] 2026-01-10 13:39:40,684 | INFO     | traces error code: 0
[2026-01-10 14:39:51] 2026-01-10 13:39:40,684 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 14:39:51] 2026-01-10 13:39:51,692 | INFO     | PID=1137921 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 14:39:51] 2026-01-10 13:39:51,692 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 14:39:51] 2026-01-10 13:39:51,692 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 14:39:51] 2026-01-10 13:39:51,692 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 14:39:51] 2026-01-10 13:39:51,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 14:39:51] 2026-01-10 13:39:51,692 | INFO     | [monitor] control thread has ended
[2026-01-10 14:39:51] 2026-01-10 13:39:51,760 [wrapper] ==== pilot stdout END ====
[2026-01-10 14:39:51] 2026-01-10 13:39:51,764 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 14:39:51] 2026-01-10 13:39:51,767 [wrapper] pilotpid: 1137921
[2026-01-10 14:39:51] 2026-01-10 13:39:51,771 [wrapper] Pilot exit status: 0
[2026-01-10 14:39:51] 2026-01-10 13:39:51,782 [wrapper] pandaids: 6963192071
[2026-01-10 14:39:51] 2026-01-10 13:39:51,804 [wrapper] cleanup supervisor_pilot 1157847 1137922
[2026-01-10 14:39:51] 2026-01-10 13:39:51,807 [wrapper] Test setup, not cleaning
[2026-01-10 14:39:51] 2026-01-10 13:39:51,811 [wrapper] apfmon messages muted
[2026-01-10 14:39:51] 2026-01-10 13:39:51,814 [wrapper] ==== wrapper stdout END ====
[2026-01-10 14:39:51] 2026-01-10 13:39:51,818 [wrapper] ==== wrapper stderr END ====
[2026-01-10 14:39:51]  *** Error codes and diagnostics ***
[2026-01-10 14:39:51]     "exeErrorCode": 0,
[2026-01-10 14:39:51]     "exeErrorDiag": "",
[2026-01-10 14:39:51]     "pilotErrorCode": 0,
[2026-01-10 14:39:51]     "pilotErrorDiag": "",
[2026-01-10 14:39:51]  *** Listing of results directory ***
[2026-01-10 14:39:51] total 444708
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 14:39:51] -rwx------ 1 boinc boinc     36322 Jan  9 05:23 runpilot2-wrapper.sh
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:24 queuedata.json
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc       100 Jan 10 12:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 14:39:51] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 12:59 run_atlas
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc       105 Jan 10 12:59 job.xml
[2026-01-10 14:39:51] -rw-r--r-- 2 boinc boinc 226299451 Jan 10 12:59 EVNT.47898824._001496.pool.root.1
[2026-01-10 14:39:51] -rw-r--r-- 2 boinc boinc    592403 Jan 10 12:59 input.tar.gz
[2026-01-10 14:39:51] -rw-r--r-- 2 boinc boinc     15847 Jan 10 12:59 start_atlas.sh
[2026-01-10 14:39:51] drwxrwx--x 2 boinc boinc      4096 Jan 10 12:59 shared
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc         0 Jan 10 12:59 boinc_setup_complete
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc      6371 Jan 10 12:59 init_data.xml
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc         0 Jan 10 12:59 boinc_lockfile
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc      2520 Jan 10 12:59 pandaJob.out
[2026-01-10 14:39:51] -rw------- 1 boinc boinc    989564 Jan 10 12:59 agis_schedconf.cvmfs.json
[2026-01-10 14:39:51] -rw------- 1 boinc boinc   1516240 Jan 10 12:59 agis_ddmendpoints.agis.ALL.json
[2026-01-10 14:39:51] drwx------ 5 boinc boinc      4096 Jan 10 12:59 pilot3
[2026-01-10 14:39:51] -rw------- 1 boinc boinc 222865482 Jan 10 14:38 HITS.47898826._038939.pool.root.1
[2026-01-10 14:39:51] -rw------- 1 boinc boinc        95 Jan 10 14:38 pilot_heartbeat.json
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc       529 Jan 10 14:39 boinc_task_state.xml
[2026-01-10 14:39:51] -rw------- 1 boinc boinc      1021 Jan 10 14:39 memory_monitor_summary.json
[2026-01-10 14:39:51] -rw------- 1 boinc boinc    288615 Jan 10 14:39 log.47898826._038939.job.log.tgz.1
[2026-01-10 14:39:51] -rw------- 1 boinc boinc      7761 Jan 10 14:39 heartbeat.json
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc        27 Jan 10 14:39 wrapper_checkpoint.txt
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc      8192 Jan 10 14:39 boinc_mmap_file
[2026-01-10 14:39:51] -rw------- 1 boinc boinc       747 Jan 10 14:39 pilotlog.txt
[2026-01-10 14:39:51] -rw------- 1 boinc boinc    868426 Jan 10 14:39 log.47898826._038939.job.log.1
[2026-01-10 14:39:51] -rw------- 1 boinc boinc       357 Jan 10 14:39 output.list
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc       620 Jan 10 14:39 runtime_log
[2026-01-10 14:39:51] -rw------- 1 boinc boinc   1177600 Jan 10 14:39 result.tar.gz
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc      8902 Jan 10 14:39 runtime_log.err
[2026-01-10 14:39:51] -rw------- 1 boinc boinc       660 Jan 10 14:39 rXMODmrCJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyDmKDmCoxjvm.diag
[2026-01-10 14:39:51] -rw-r--r-- 1 boinc boinc     10377 Jan 10 14:39 stderr.txt
[2026-01-10 14:39:51] HITS file was successfully produced:
[2026-01-10 14:39:51] -rw------- 1 boinc boinc 222865482 Jan 10 14:38 shared/HITS.pool.root.1
[2026-01-10 14:39:51]  *** Contents of shared directory: ***
[2026-01-10 14:39:51] total 440396
[2026-01-10 14:39:51] -rw-r--r-- 2 boinc boinc 226299451 Jan 10 12:59 ATLAS.root_0
[2026-01-10 14:39:51] -rw-r--r-- 2 boinc boinc    592403 Jan 10 12:59 input.tar.gz
[2026-01-10 14:39:51] -rw-r--r-- 2 boinc boinc     15847 Jan 10 12:59 start_atlas.sh
[2026-01-10 14:39:51] -rw------- 1 boinc boinc 222865482 Jan 10 14:38 HITS.pool.root.1
[2026-01-10 14:39:51] -rw------- 1 boinc boinc   1177600 Jan 10 14:39 result.tar.gz
14:40:14 (1134114): run_atlas exited; CPU time 22714.741858
14:40:14 (1134114): called boinc_finish(0)

</stderr_txt>
]]>

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