Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:42:42 (22335): wrapper (7.7.26015): starting
07:42:42 (22335): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 07:42:42] Arguments: --nthreads 8
[2026-01-10 07:42:42] Threads: 8
[2026-01-10 07:42:42] Checking for CVMFS
[2026-01-10 07:42:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 07:42:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 07:42:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 07:42:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 07:42:43] 2.11.2.0 21704 36510 129280 154970 1 125 19755100 25165824 94 130560 0 17828410 99.813 11966354 3020 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 07:42:43] CVMFS is ok
[2026-01-10 07:42:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 07:42:43] Checking for apptainer binary...
[2026-01-10 07:42:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 07:42:43] Running /usr/bin/apptainer --version
[2026-01-10 07:42:43] apptainer version 1.3.2-1.el7
[2026-01-10 07:42:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 07:42:44] cg-vwn497.simple-grid.lan
[2026-01-10 07:42:44] apptainer works
[2026-01-10 07:42:44] Set ATHENA_PROC_NUMBER=8
[2026-01-10 07:42:44] Set ATHENA_CORE_NUMBER=8
[2026-01-10 07:42:44] Starting ATLAS job with PandaID=6963192059
[2026-01-10 07:42:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:57:43]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:57:43] 2026-01-10 11:57:00,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:57:43] 2026-01-10 11:57:00,766 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 12:57:43] 2026-01-10 11:57:00,767 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-10 12:57:43] 2026-01-10 11:57:00,769 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6963192059/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:57:43] 2026-01-10 11:57:00,769 | INFO     | extracted standard info from prmon json
[2026-01-10 12:57:43] 2026-01-10 11:57:00,769 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:57:43] 2026-01-10 11:57:00,770 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:57:43] 2026-01-10 11:57:00,770 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 12:57:43] 2026-01-10 11:57:00,770 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 12:57:43] 2026-01-10 11:57:00,784 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:57:43] 2026-01-10 11:57:00,785 | INFO     | sum of square deviations: 8971993338.0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,788 | INFO     | sum of deviations: -15154922716.000034
[2026-01-10 12:57:43] 2026-01-10 11:57:00,788 | INFO     | mean x: 1768036751.0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,788 | INFO     | mean y: 2483236.1335504884
[2026-01-10 12:57:43] 2026-01-10 11:57:00,788 | INFO     | intersect: 2988938900.0011864
[2026-01-10 12:57:43] 2026-01-10 11:57:00,789 | INFO     | chi2: 3.2028340964686857
[2026-01-10 12:57:43] 2026-01-10 11:57:00,790 | INFO     | sum of square deviations: 8540720135.5
[2026-01-10 12:57:43] 2026-01-10 11:57:00,793 | INFO     | sum of deviations: 26784851760.500008
[2026-01-10 12:57:43] 2026-01-10 11:57:00,793 | INFO     | mean x: 1768036598.5
[2026-01-10 12:57:43] 2026-01-10 11:57:00,793 | INFO     | mean y: 2497921.294701987
[2026-01-10 12:57:43] 2026-01-10 11:57:00,793 | INFO     | intersect: -5542303623.146582
[2026-01-10 12:57:43] 2026-01-10 11:57:00,794 | INFO     | chi2: 1.543209367053122
[2026-01-10 12:57:43] 2026-01-10 11:57:00,794 | INFO     | current chi2=1.543209367053122 (change=51.81738046455165 %)
[2026-01-10 12:57:43] 2026-01-10 11:57:00,795 | INFO     | sum of square deviations: 8123493708.0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,814 | INFO     | sum of deviations: 26240703913.999996
[2026-01-10 12:57:43] 2026-01-10 11:57:00,814 | INFO     | mean x: 1768036446.0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,814 | INFO     | mean y: 2497722.387205387
[2026-01-10 12:57:43] 2026-01-10 11:57:00,815 | INFO     | intersect: -5708655945.763927
[2026-01-10 12:57:43] 2026-01-10 11:57:00,815 | INFO     | chi2: 1.543663724913088
[2026-01-10 12:57:43] 2026-01-10 11:57:00,815 | INFO     | current chi2=1.543663724913088 (change=-0.02944239904619622 %)
[2026-01-10 12:57:43] 2026-01-10 11:57:00,815 | INFO     | right removable region: 296
[2026-01-10 12:57:43] 2026-01-10 11:57:00,816 | INFO     | sum of square deviations: 8540720135.5
[2026-01-10 12:57:43] 2026-01-10 11:57:00,819 | INFO     | sum of deviations: -60249838897.0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,819 | INFO     | mean x: 1768036903.5
[2026-01-10 12:57:43] 2026-01-10 11:57:00,819 | INFO     | mean y: 2499055.2317880793
[2026-01-10 12:57:43] 2026-01-10 11:57:00,819 | INFO     | intersect: 12474976423.62755
[2026-01-10 12:57:43] 2026-01-10 11:57:00,820 | INFO     | chi2: 1.8022892460974138
[2026-01-10 12:57:43] 2026-01-10 11:57:00,820 | INFO     | current chi2=1.8022892460974138 (change=43.72829838159446 %)
[2026-01-10 12:57:43] 2026-01-10 11:57:00,820 | INFO     | sum of square deviations: 8123493708.0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,823 | INFO     | sum of deviations: -53399800221.0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,824 | INFO     | mean x: 1768037056.0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,824 | INFO     | mean y: 2496537.1582491584
[2026-01-10 12:57:43] 2026-01-10 11:57:00,824 | INFO     | intersect: 11624691243.944004
[2026-01-10 12:57:43] 2026-01-10 11:57:00,824 | INFO     | chi2: 1.7823897702131448
[2026-01-10 12:57:43] 2026-01-10 11:57:00,824 | INFO     | current chi2=1.7823897702131448 (change=1.1041222116460114 %)
[2026-01-10 12:57:43] 2026-01-10 11:57:00,824 | INFO     | left removable region: 20
[2026-01-10 12:57:43] 2026-01-10 11:57:00,825 | INFO     | sum of square deviations: 6519285025.0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,827 | INFO     | sum of deviations: 8502146511.0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,828 | INFO     | mean x: 1768037025.5
[2026-01-10 12:57:43] 2026-01-10 11:57:00,828 | INFO     | mean y: 2503441.065217391
[2026-01-10 12:57:43] 2026-01-10 11:57:00,828 | INFO     | intersect: -2303287726.222125
[2026-01-10 12:57:43] 2026-01-10 11:57:00,828 | INFO     | chi2: 0.001776287804681587
[2026-01-10 12:57:43] 2026-01-10 11:57:00,828 | INFO     | current memory leak: 1.30 B/s (using 276 data points, chi2=0.00)
[2026-01-10 12:57:43] 2026-01-10 11:57:00,829 | INFO     | could have reported an average CPU frequency of 2249 MHz (13 samples)
[2026-01-10 12:57:43] 2026-01-10 11:57:00,829 | INFO     | ..............................
[2026-01-10 12:57:43] 2026-01-10 11:57:00,829 | INFO     | . Timing measurements:
[2026-01-10 12:57:43] 2026-01-10 11:57:00,830 | INFO     | . get job = 0 s
[2026-01-10 12:57:43] 2026-01-10 11:57:00,830 | INFO     | . initial setup = 1 s
[2026-01-10 12:57:43] 2026-01-10 11:57:00,830 | INFO     | . payload setup = 9 s
[2026-01-10 12:57:43] 2026-01-10 11:57:00,830 | INFO     | . stage-in = 0 s
[2026-01-10 12:57:43] 2026-01-10 11:57:00,830 | INFO     | . payload execution = 18690 s
[2026-01-10 12:57:43] 2026-01-10 11:57:00,830 | INFO     | . stage-out = 4 s
[2026-01-10 12:57:43] 2026-01-10 11:57:00,830 | INFO     | . log creation = 1 s
[2026-01-10 12:57:43] 2026-01-10 11:57:00,830 | INFO     | ..............................
[2026-01-10 12:57:43] 2026-01-10 11:57:00,940 | INFO     | 
[2026-01-10 12:57:43] 2026-01-10 11:57:00,940 | INFO     | job summary report
[2026-01-10 12:57:43] 2026-01-10 11:57:00,940 | INFO     | --------------------------------------------------
[2026-01-10 12:57:43] 2026-01-10 11:57:00,940 | INFO     | PanDA job id: 6963192059
[2026-01-10 12:57:43] 2026-01-10 11:57:00,941 | INFO     | task id: 47898826
[2026-01-10 12:57:43] 2026-01-10 11:57:00,941 | INFO     | errors: (none)
[2026-01-10 12:57:43] 2026-01-10 11:57:00,941 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:57:43] 2026-01-10 11:57:00,941 | INFO     | pilot state: finished 
[2026-01-10 12:57:43] 2026-01-10 11:57:00,941 | INFO     | transexitcode: 0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,941 | INFO     | exeerrorcode: 0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,941 | INFO     | exeerrordiag: 
[2026-01-10 12:57:43] 2026-01-10 11:57:00,941 | INFO     | exitcode: 0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | exitmsg: OK
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | cpuconsumptiontime: 72549 s
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | nevents: 400
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | neventsw: 0
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | pid: 6480
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | pgrp: 6480
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | corecount: 8
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | event service: False
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | sizes: {0: 2283743, 1: 2283998, 6: 2284260, 12: 2284288, 18704: 2316406, 18709: 2325406, 18710: 2325590, 18822: 2325784}
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | --------------------------------------------------
[2026-01-10 12:57:43] 2026-01-10 11:57:00,942 | INFO     | 
[2026-01-10 12:57:43] 2026-01-10 11:57:00,943 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-10 12:57:43] 2026-01-10 11:57:01,393 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,393 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,393 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,393 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,393 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,394 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,395 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,395 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:57:43] 2026-01-10 11:57:01,395 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,395 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:57:43] 2026-01-10 11:57:01,395 | INFO     | job 6963192059 has completed (purged errors)
[2026-01-10 12:57:43] 2026-01-10 11:57:01,395 | INFO     | overall cleanup function is called
[2026-01-10 12:57:43] 2026-01-10 11:57:02,404 | INFO     | --- collectZombieJob: --- 10, [6480]
[2026-01-10 12:57:43] 2026-01-10 11:57:02,404 | INFO     | zombie collector waiting for pid 6480
[2026-01-10 12:57:43] 2026-01-10 11:57:02,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:57:43] 2026-01-10 11:57:02,404 | INFO     | collected zombie processes
[2026-01-10 12:57:43] 2026-01-10 11:57:02,405 | INFO     | will attempt to kill all subprocesses of pid=6480
[2026-01-10 12:57:43] 2026-01-10 11:57:02,486 | INFO     | process IDs to be killed: [6480] (in reverse order)
[2026-01-10 12:57:43] 2026-01-10 11:57:03,463 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:57:43] 2026-01-10 11:57:03,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:57:43] 2026-01-10 11:57:03,465 | INFO     | did not find any defunct processes belonging to 6480
[2026-01-10 12:57:43] 2026-01-10 11:57:03,466 | INFO     | did not find any defunct processes belonging to 6480
[2026-01-10 12:57:43] 2026-01-10 11:57:03,467 | INFO     | ready for new job
[2026-01-10 12:57:43] 2026-01-10 11:57:03,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:57:43] 2026-01-10 11:57:03,474 | INFO     | ***************************************
[2026-01-10 12:57:43] 2026-01-10 11:57:03,474 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:57:43] 2026-01-10 11:57:03,474 | INFO     | ***************************************
[2026-01-10 12:57:43] 2026-01-10 11:57:03,475 | INFO     | 
[2026-01-10 12:57:43] 2026-01-10 11:57:03,475 | INFO     | pilot is running in a VM
[2026-01-10 12:57:43] 2026-01-10 11:57:03,475 | INFO     | architecture information:
[2026-01-10 12:57:43] 2026-01-10 11:57:03,497 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:57:43] 2026-01-10 11:57:03,819 | INFO     | cat /etc/os-release:
[2026-01-10 12:57:43] NAME="CentOS Linux"
[2026-01-10 12:57:43] VERSION="7 (Core)"
[2026-01-10 12:57:43] ID="centos"
[2026-01-10 12:57:43] ID_LIKE="rhel fedora"
[2026-01-10 12:57:43] VERSION_ID="7"
[2026-01-10 12:57:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:57:43] ANSI_COLOR="0;31"
[2026-01-10 12:57:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:57:43] HOME_URL="https://www.centos.org/"
[2026-01-10 12:57:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:57:43] 
[2026-01-10 12:57:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:57:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:57:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:57:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:57:43] 
[2026-01-10 12:57:43] 2026-01-10 11:57:03,820 | INFO     | ***************************************
[2026-01-10 12:57:43] 2026-01-10 11:57:04,323 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-10 12:57:43] 2026-01-10 11:57:04,522 | INFO     | sufficient remaining disk space (498403901440 B)
[2026-01-10 12:57:43] 2026-01-10 11:57:04,522 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:57:43] 2026-01-10 11:57:04,522 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:57:43] 2026-01-10 11:57:04,523 | INFO     | update_server=False
[2026-01-10 12:57:43] 2026-01-10 11:57:04,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:57:43] 2026-01-10 11:57:04,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:57:43] 2026-01-10 11:57:04,525 | INFO     | aborting loop
[2026-01-10 12:57:43] 2026-01-10 11:57:04,892 | INFO     | all data control threads have been joined
[2026-01-10 12:57:43] 2026-01-10 11:57:05,012 | INFO     | all payload control threads have been joined
[2026-01-10 12:57:43] 2026-01-10 11:57:05,440 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:57:43] 2026-01-10 11:57:05,529 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:05,531 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:05,621 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:05,632 | INFO     | [job] validate thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:05,782 | INFO     | all job control threads have been joined
[2026-01-10 12:57:43] 2026-01-10 11:57:05,825 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:05,832 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:05,898 | INFO     | [data] control thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:05,960 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:57:43] 2026-01-10 11:57:05,988 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:06,018 | INFO     | [payload] control thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:06,153 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:06,524 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:06,603 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:06,788 | INFO     | [job] control thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:06,966 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:07,447 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:07,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:57:43] 2026-01-10 11:57:11,773 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:57:43] 2026-01-10 11:57:32,759 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:57:43] 2026-01-10 11:57:33,211 | INFO     | PID=26057 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 12:57:43] 2026-01-10 11:57:33,211 | INFO     | .. there are 2 such processes running
[2026-01-10 12:57:43] 2026-01-10 11:57:33,212 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:57:43] 2026-01-10 11:57:33,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:57:43] 2026-01-10 11:57:33,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:57:43] 2026-01-10 11:57:33,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140173118113600)>', '<ExcThread(monitor, started 140172683368192)>']
[2026-01-10 12:57:43] 2026-01-10 11:57:34,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:57:43] 2026-01-10 11:57:34,218 | INFO     | [monitor] control thread has ended
[2026-01-10 12:57:43] 2026-01-10 11:57:38,660 | INFO     | all workflow threads have been joined
[2026-01-10 12:57:43] 2026-01-10 11:57:38,660 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:57:43] 2026-01-10 11:57:38,660 | INFO     | traces error code: 0
[2026-01-10 12:57:43] 2026-01-10 11:57:38,661 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:57:43] 2026-01-10 11:57:39,093 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:57:43] 2026-01-10 11:57:39,186 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:57:43] 2026-01-10 11:57:39,236 [wrapper] pilotpid: 26057
[2026-01-10 12:57:43] 2026-01-10 11:57:39,353 [wrapper] Pilot exit status: 0
[2026-01-10 12:57:43] 2026-01-10 11:57:39,781 [wrapper] pandaids: 6963192059
[2026-01-10 12:57:43] 2026-01-10 11:57:40,947 [wrapper] cleanup supervisor_pilot  3869 26058
[2026-01-10 12:57:43] 2026-01-10 11:57:41,015 [wrapper] Test setup, not cleaning
[2026-01-10 12:57:43] 2026-01-10 11:57:41,031 [wrapper] apfmon messages muted
[2026-01-10 12:57:43] 2026-01-10 11:57:41,079 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:57:43] 2026-01-10 11:57:41,133 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:57:43]  *** Error codes and diagnostics ***
[2026-01-10 12:57:43]     "exeErrorCode": 0,
[2026-01-10 12:57:43]     "exeErrorDiag": "",
[2026-01-10 12:57:43]     "pilotErrorCode": 0,
[2026-01-10 12:57:43]     "pilotErrorDiag": "",
[2026-01-10 12:57:43]  *** Listing of results directory ***
[2026-01-10 12:57:43] total 441104
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 12:57:43] -rwx------. 1 boinc boinc     36322 Jan  9 05:23 runpilot2-wrapper.sh
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc      5112 Jan  9 05:24 queuedata.json
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc       100 Jan 10 07:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:57:43] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 07:42 run_atlas
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc       105 Jan 10 07:42 job.xml
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc      6390 Jan 10 07:42 init_data.xml
[2026-01-10 12:57:43] -rw-r--r--. 2 boinc boinc 226299451 Jan 10 07:42 EVNT.47898824._001496.pool.root.1
[2026-01-10 12:57:43] -rw-r--r--. 2 boinc boinc     15847 Jan 10 07:42 start_atlas.sh
[2026-01-10 12:57:43] drwxrwx--x. 2 boinc boinc        68 Jan 10 07:42 shared
[2026-01-10 12:57:43] -rw-r--r--. 2 boinc boinc    592405 Jan 10 07:42 input.tar.gz
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc         0 Jan 10 07:42 boinc_lockfile
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc      2519 Jan 10 07:42 pandaJob.out
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc    989374 Jan 10 07:42 agis_schedconf.cvmfs.json
[2026-01-10 12:57:43] drwx------. 5 boinc boinc      4096 Jan 10 07:43 pilot3
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc 215452699 Jan 10 12:53 HITS.47898826._038927.pool.root.1
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc       531 Jan 10 12:53 boinc_task_state.xml
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc      1016 Jan 10 12:54 memory_monitor_summary.json
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc   1516240 Jan 10 12:55 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc    501001 Jan 10 12:55 log.47898826._038927.job.log.tgz.1
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc      7772 Jan 10 12:57 heartbeat.json
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc        95 Jan 10 12:57 pilot_heartbeat.json
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc      8192 Jan 10 12:57 boinc_mmap_file
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc        28 Jan 10 12:57 wrapper_checkpoint.txt
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc      4885 Jan 10 12:57 pilotlog.txt
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc   2516460 Jan 10 12:57 log.47898826._038927.job.log.1
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc       357 Jan 10 12:57 output.list
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc       620 Jan 10 12:57 runtime_log
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc   3041280 Jan 10 12:57 result.tar.gz
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc       656 Jan 10 12:57 vCEODmrCJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtDmKDml1UWZm.diag
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc      8833 Jan 10 12:57 runtime_log.err
[2026-01-10 12:57:43] -rw-r--r--. 1 boinc boinc     20741 Jan 10 12:57 stderr.txt
[2026-01-10 12:57:43] HITS file was successfully produced:
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc 215452699 Jan 10 12:53 shared/HITS.pool.root.1
[2026-01-10 12:57:43]  *** Contents of shared directory: ***
[2026-01-10 12:57:43] total 434968
[2026-01-10 12:57:43] -rw-r--r--. 2 boinc boinc 226299451 Jan 10 07:42 ATLAS.root_0
[2026-01-10 12:57:43] -rw-r--r--. 2 boinc boinc     15847 Jan 10 07:42 start_atlas.sh
[2026-01-10 12:57:43] -rw-r--r--. 2 boinc boinc    592405 Jan 10 07:42 input.tar.gz
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc 215452699 Jan 10 12:53 HITS.pool.root.1
[2026-01-10 12:57:43] -rw-------. 1 boinc boinc   3041280 Jan 10 12:57 result.tar.gz
12:57:44 (22335): run_atlas exited; CPU time 72712.186383
12:57:44 (22335): called boinc_finish(0)

</stderr_txt>
]]>

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