Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:04:37 (744862): wrapper (7.7.26015): starting
14:04:37 (744862): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 14:04:37] Arguments: --nthreads 4
[2026-01-10 14:04:37] Threads: 4
[2026-01-10 14:04:37] Checking for CVMFS
[2026-01-10 14:04:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 14:04:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 14:04:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 14:04:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 14:04:38] 2.9.2.0 3912768 3677 99516 154980 3 57 21305600 36864001 0 130560 0 2669106 99.989 137347 3357 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 14:04:38] CVMFS is ok
[2026-01-10 14:04:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 14:04:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 14:04:38] Further information can be found at the LHC@home message board.
[2026-01-10 14:04:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 14:04:38] Checking for apptainer binary...
[2026-01-10 14:04:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 14:04:38] Running /usr/bin/apptainer --version
[2026-01-10 14:04:38] apptainer version 1.4.1-1.1
[2026-01-10 14:04:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 14:04:38] thA375a
[2026-01-10 14:04:38] apptainer works
[2026-01-10 14:04:38] Set ATHENA_PROC_NUMBER=4
[2026-01-10 14:04:38] Set ATHENA_CORE_NUMBER=4
[2026-01-10 14:04:38] Starting ATLAS job with PandaID=6963189050
[2026-01-10 14:04:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 15:46:59]  *** The last 200 lines of the pilot log: ***
[2026-01-10 15:46:59] 2026-01-10 14:46:17,727 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 15:46:59] 2026-01-10 14:46:17,727 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 15:46:59] 2026-01-10 14:46:17,727 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 15:46:59] 2026-01-10 14:46:17,727 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 15:46:59] 2026-01-10 14:46:17,727 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 15:46:59] 2026-01-10 14:46:17,727 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 15:46:59] 2026-01-10 14:46:17,727 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 15:46:59] 2026-01-10 14:46:17,727 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 15:46:59] 2026-01-10 14:46:17,727 | INFO     | job 6963189050 has completed (purged errors)
[2026-01-10 15:46:59] 2026-01-10 14:46:17,727 | INFO     | overall cleanup function is called
[2026-01-10 15:46:59] 2026-01-10 14:46:18,734 | INFO     | --- collectZombieJob: --- 10, [755231]
[2026-01-10 15:46:59] 2026-01-10 14:46:18,734 | INFO     | zombie collector waiting for pid 755231
[2026-01-10 15:46:59] 2026-01-10 14:46:18,734 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 15:46:59] 2026-01-10 14:46:18,734 | INFO     | collected zombie processes
[2026-01-10 15:46:59] 2026-01-10 14:46:18,734 | INFO     | will attempt to kill all subprocesses of pid=755231
[2026-01-10 15:46:59] 2026-01-10 14:46:18,779 | INFO     | process IDs to be killed: [755231] (in reverse order)
[2026-01-10 15:46:59] 2026-01-10 14:46:18,812 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 15:46:59] 2026-01-10 14:46:18,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 15:46:59] 2026-01-10 14:46:18,814 | INFO     | did not find any defunct processes belonging to 755231
[2026-01-10 15:46:59] 2026-01-10 14:46:18,815 | INFO     | did not find any defunct processes belonging to 755231
[2026-01-10 15:46:59] 2026-01-10 14:46:18,815 | INFO     | ready for new job
[2026-01-10 15:46:59] 2026-01-10 14:46:18,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 15:46:59] 2026-01-10 14:46:18,816 | INFO     | ***************************************
[2026-01-10 15:46:59] 2026-01-10 14:46:18,816 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 15:46:59] 2026-01-10 14:46:18,816 | INFO     | ***************************************
[2026-01-10 15:46:59] 2026-01-10 14:46:18,816 | INFO     | 
[2026-01-10 15:46:59] 2026-01-10 14:46:18,817 | INFO     | architecture information:
[2026-01-10 15:46:59] 2026-01-10 14:46:18,817 | INFO     | executing command: cat /etc/os-release
[2026-01-10 15:46:59] 2026-01-10 14:46:18,831 | INFO     | cat /etc/os-release:
[2026-01-10 15:46:59] NAME="CentOS Linux"
[2026-01-10 15:46:59] VERSION="7 (Core)"
[2026-01-10 15:46:59] ID="centos"
[2026-01-10 15:46:59] ID_LIKE="rhel fedora"
[2026-01-10 15:46:59] VERSION_ID="7"
[2026-01-10 15:46:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 15:46:59] ANSI_COLOR="0;31"
[2026-01-10 15:46:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 15:46:59] HOME_URL="https://www.centos.org/"
[2026-01-10 15:46:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 15:46:59] 
[2026-01-10 15:46:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 15:46:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 15:46:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 15:46:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 15:46:59] 
[2026-01-10 15:46:59] 2026-01-10 14:46:18,831 | INFO     | ***************************************
[2026-01-10 15:46:59] 2026-01-10 14:46:19,334 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 15:46:59] 2026-01-10 14:46:19,353 | INFO     | sufficient remaining disk space (239671967744 B)
[2026-01-10 15:46:59] 2026-01-10 14:46:19,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 15:46:59] 2026-01-10 14:46:19,354 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 15:46:59] 2026-01-10 14:46:19,354 | INFO     | update_server=False
[2026-01-10 15:46:59] 2026-01-10 14:46:19,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 15:46:59] 2026-01-10 14:46:19,354 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 15:46:59] 2026-01-10 14:46:19,354 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 15:46:59] 2026-01-10 14:46:19,354 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 15:46:59] 2026-01-10 14:46:19,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 15:46:59] 2026-01-10 14:46:19,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 15:46:59] 2026-01-10 14:46:19,435 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 15:46:59] 2026-01-10 14:46:19,436 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 15:46:59] 2026-01-10 14:46:19,436 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 15:46:59] 2026-01-10 14:46:19,436 | INFO     | will abort loop
[2026-01-10 15:46:59] 2026-01-10 14:46:19,626 | INFO     | all payload control threads have been joined
[2026-01-10 15:46:59] 2026-01-10 14:46:20,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 15:46:59] 2026-01-10 14:46:20,346 | INFO     | all data control threads have been joined
[2026-01-10 15:46:59] 2026-01-10 14:46:20,359 | INFO     | [job] retrieve thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:20,360 | INFO     | [job] queue monitor thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:20,441 | INFO     | [job] job monitor thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:20,486 | INFO     | [payload] validate_post thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:20,632 | INFO     | [payload] control thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:20,808 | INFO     | [payload] failed_post thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:20,836 | INFO     | [job] validate thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:20,923 | INFO     | all job control threads have been joined
[2026-01-10 15:46:59] 2026-01-10 14:46:20,939 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:21,054 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:21,249 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:21,352 | INFO     | [data] control thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:21,583 | INFO     | [data] copytool_in thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:21,928 | INFO     | [job] control thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:22,110 | INFO     | [data] copytool_out thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:22,586 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 15:46:59] 2026-01-10 14:46:26,593 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:29,552 | INFO     | job.realtimelogging is not enabled
[2026-01-10 15:46:59] 2026-01-10 14:46:30,558 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 15:46:59] 2026-01-10 14:46:53,456 | INFO     | [monitor] cgroup control has ended
[2026-01-10 15:46:59] 2026-01-10 14:46:54,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663215003456)>', '<ExcThread(monitor, started 140661982488320)>']
[2026-01-10 15:46:59] 2026-01-10 14:46:54,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 15:46:59] 2026-01-10 14:46:54,531 | INFO     | [monitor] control thread has ended
[2026-01-10 15:46:59] 2026-01-10 14:46:59,329 | INFO     | all workflow threads have been joined
[2026-01-10 15:46:59] 2026-01-10 14:46:59,329 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 15:46:59] 2026-01-10 14:46:59,330 | INFO     | traces error code: 0
[2026-01-10 15:46:59] 2026-01-10 14:46:59,330 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 15:46:59] 2026-01-10 14:46:59,409 [wrapper] ==== pilot stdout END ====
[2026-01-10 15:46:59] 2026-01-10 14:46:59,414 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 15:46:59] 2026-01-10 14:46:59,418 [wrapper] pilotpid: 748652
[2026-01-10 15:46:59] 2026-01-10 14:46:59,422 [wrapper] Pilot exit status: 0
[2026-01-10 15:46:59] 2026-01-10 14:46:59,434 [wrapper] pandaids: 6963189050
[2026-01-10 15:46:59] 2026-01-10 14:46:59,456 [wrapper] cleanup supervisor_pilot  767424 748653
[2026-01-10 15:46:59] 2026-01-10 14:46:59,460 [wrapper] Test setup, not cleaning
[2026-01-10 15:46:59] 2026-01-10 14:46:59,464 [wrapper] apfmon messages muted
[2026-01-10 15:46:59] 2026-01-10 14:46:59,468 [wrapper] ==== wrapper stdout END ====
[2026-01-10 15:46:59] 2026-01-10 14:46:59,472 [wrapper] ==== wrapper stderr END ====
[2026-01-10 15:46:59]  *** Error codes and diagnostics ***
[2026-01-10 15:46:59]     "exeErrorCode": 0,
[2026-01-10 15:46:59]     "exeErrorDiag": "",
[2026-01-10 15:46:59]     "pilotErrorCode": 0,
[2026-01-10 15:46:59]     "pilotErrorDiag": "",
[2026-01-10 15:46:59]  *** Listing of results directory ***
[2026-01-10 15:46:59] total 440160
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 15:46:59] -rwx------ 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc       100 Jan 10 14:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 15:46:59] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 14:04 run_atlas
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc       105 Jan 10 14:04 job.xml
[2026-01-10 15:46:59] -rw-r--r-- 2 boinc boinc 222733385 Jan 10 14:04 EVNT.47898824._001458.pool.root.1
[2026-01-10 15:46:59] -rw-r--r-- 2 boinc boinc    592396 Jan 10 14:04 input.tar.gz
[2026-01-10 15:46:59] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:04 start_atlas.sh
[2026-01-10 15:46:59] drwxrwx--x 2 boinc boinc      4096 Jan 10 14:04 shared
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:04 boinc_setup_complete
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc      6378 Jan 10 14:04 init_data.xml
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:04 boinc_lockfile
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc      2520 Jan 10 14:04 pandaJob.out
[2026-01-10 15:46:59] -rw------- 1 boinc boinc    989556 Jan 10 14:04 agis_schedconf.cvmfs.json
[2026-01-10 15:46:59] -rw------- 1 boinc boinc   1516240 Jan 10 14:04 agis_ddmendpoints.agis.ALL.json
[2026-01-10 15:46:59] drwx------ 5 boinc boinc      4096 Jan 10 14:04 pilot3
[2026-01-10 15:46:59] -rw------- 1 boinc boinc 221745365 Jan 10 15:45 HITS.47898826._037987.pool.root.1
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc       529 Jan 10 15:45 boinc_task_state.xml
[2026-01-10 15:46:59] -rw------- 1 boinc boinc      1020 Jan 10 15:46 memory_monitor_summary.json
[2026-01-10 15:46:59] -rw------- 1 boinc boinc    286965 Jan 10 15:46 log.47898826._037987.job.log.tgz.1
[2026-01-10 15:46:59] -rw------- 1 boinc boinc      7756 Jan 10 15:46 heartbeat.json
[2026-01-10 15:46:59] -rw------- 1 boinc boinc        95 Jan 10 15:46 pilot_heartbeat.json
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc      8192 Jan 10 15:46 boinc_mmap_file
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc        27 Jan 10 15:46 wrapper_checkpoint.txt
[2026-01-10 15:46:59] -rw------- 1 boinc boinc      4814 Jan 10 15:46 pilotlog.txt
[2026-01-10 15:46:59] -rw------- 1 boinc boinc    883561 Jan 10 15:46 log.47898826._037987.job.log.1
[2026-01-10 15:46:59] -rw------- 1 boinc boinc       357 Jan 10 15:46 output.list
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc       620 Jan 10 15:46 runtime_log
[2026-01-10 15:46:59] -rw------- 1 boinc boinc   1187840 Jan 10 15:46 result.tar.gz
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc      8902 Jan 10 15:46 runtime_log.err
[2026-01-10 15:46:59] -rw------- 1 boinc boinc       660 Jan 10 15:46 6v9MDm1BJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1tgKDmURS7Io.diag
[2026-01-10 15:46:59] -rw-r--r-- 1 boinc boinc     11857 Jan 10 15:46 stderr.txt
[2026-01-10 15:46:59] HITS file was successfully produced:
[2026-01-10 15:46:59] -rw------- 1 boinc boinc 221745365 Jan 10 15:45 shared/HITS.pool.root.1
[2026-01-10 15:46:59]  *** Contents of shared directory: ***
[2026-01-10 15:46:59] total 435832
[2026-01-10 15:46:59] -rw-r--r-- 2 boinc boinc 222733385 Jan 10 14:04 ATLAS.root_0
[2026-01-10 15:46:59] -rw-r--r-- 2 boinc boinc    592396 Jan 10 14:04 input.tar.gz
[2026-01-10 15:46:59] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:04 start_atlas.sh
[2026-01-10 15:46:59] -rw------- 1 boinc boinc 221745365 Jan 10 15:45 HITS.pool.root.1
[2026-01-10 15:46:59] -rw------- 1 boinc boinc   1187840 Jan 10 15:46 result.tar.gz
15:47:00 (744862): run_atlas exited; CPU time 23177.444414
15:47:00 (744862): called boinc_finish(0)

</stderr_txt>
]]>

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