Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:56:39 (4156904): wrapper (7.7.26015): starting
17:56:39 (4156904): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:56:39] Arguments: --nthreads 8
[2026-01-09 17:56:39] Threads: 8
[2026-01-09 17:56:39] Checking for CVMFS
[2026-01-09 17:56:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:56:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:56:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:56:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:56:40] 2.13.3.0 7069 24170 256940 154959 2 363 29098282 40960000 13587 16776704 0 36873372 99.825 48710586 31800 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 17:56:40] CVMFS is ok
[2026-01-09 17:56:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:56:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:56:40] Further information can be found at the LHC@home message board.
[2026-01-09 17:56:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:56:40] Checking for apptainer binary...
[2026-01-09 17:56:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:56:40] Running /usr/bin/apptainer --version
[2026-01-09 17:56:41] apptainer version 1.4.5-2.el9
[2026-01-09 17:56:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:56:41] c-210-35-3.aglt2.org
[2026-01-09 17:56:41] apptainer works
[2026-01-09 17:56:41] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:56:41] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:56:41] Starting ATLAS job with PandaID=6962917983
[2026-01-09 17:56:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:00:04 (4156904): BOINC client no longer exists - exiting
19:00:04 (4156904): timer handler: client dead, exiting
19:09:23 (173025): wrapper (7.7.26015): starting
19:09:23 (173025): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 19:09:23] Arguments: --nthreads 8
[2026-01-09 19:09:23] Threads: 8
[2026-01-09 19:09:23] This job has been restarted, cleaning up previous attempt
[2026-01-09 19:09:23] Checking for CVMFS
[2026-01-09 19:09:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:09:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:09:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:09:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:09:25] 2.13.3.0 7069 24243 250252 154961 1 71 32003856 40960001 12056 16776704 0 36967904 99.824 48806136 31799 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 19:09:25] CVMFS is ok
[2026-01-09 19:09:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:09:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:09:25] Further information can be found at the LHC@home message board.
[2026-01-09 19:09:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:09:25] Checking for apptainer binary...
[2026-01-09 19:09:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:09:25] Running /usr/bin/apptainer --version
[2026-01-09 19:09:25] apptainer version 1.4.5-2.el9
[2026-01-09 19:09:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:09:26] c-210-35-3.aglt2.org
[2026-01-09 19:09:26] apptainer works
[2026-01-09 19:09:26] Set ATHENA_PROC_NUMBER=8
[2026-01-09 19:09:26] Set ATHENA_CORE_NUMBER=8
[2026-01-09 19:09:26] Starting ATLAS job with PandaID=6962917983
[2026-01-09 19:09:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:51:23]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:51:23] 2026-01-10 12:50:28,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 07:51:23] 2026-01-10 12:50:29,867 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 07:51:23] 2026-01-10 12:50:29,890 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2947.053232142857
[2026-01-10 07:51:23] 2026-01-10 12:50:29,979 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6962917983/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 07:51:23] 2026-01-10 12:50:29,980 | INFO     | extracted standard info from prmon json
[2026-01-10 07:51:23] 2026-01-10 12:50:29,980 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 07:51:23] 2026-01-10 12:50:29,980 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 07:51:23] 2026-01-10 12:50:29,981 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 07:51:23] 2026-01-10 12:50:29,981 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 07:51:23] 2026-01-10 12:50:30,018 | INFO     | fitting pss+swap vs Time
[2026-01-10 07:51:23] 2026-01-10 12:50:30,019 | INFO     | sum of square deviations: 129252593473.6637
[2026-01-10 07:51:23] 2026-01-10 12:50:30,081 | INFO     | sum of deviations: 200399105431.39343
[2026-01-10 07:51:23] 2026-01-10 12:50:30,081 | INFO     | mean x: 1768026597.5381527
[2026-01-10 07:51:23] 2026-01-10 12:50:30,082 | INFO     | mean y: 2505718.372155288
[2026-01-10 07:51:23] 2026-01-10 12:50:30,082 | INFO     | intersect: -2738723211.767261
[2026-01-10 07:51:23] 2026-01-10 12:50:30,083 | INFO     | chi2: 4.0878778063432275
[2026-01-10 07:51:23] 2026-01-10 12:50:30,107 | INFO     | sum of square deviations: 126674521161.86667
[2026-01-10 07:51:23] 2026-01-10 12:50:30,155 | INFO     | time since job start (45641s) is within the limit (174528.0s)
[2026-01-10 07:51:23] 2026-01-10 12:50:30,176 | INFO     | sum of deviations: 346213908706.71014
[2026-01-10 07:51:23] 2026-01-10 12:50:30,176 | INFO     | mean x: 1768026445.0390835
[2026-01-10 07:51:23] 2026-01-10 12:50:30,176 | INFO     | mean y: 2514321.0444743936
[2026-01-10 07:51:23] 2026-01-10 12:50:30,177 | INFO     | intersect: -4829675614.385714
[2026-01-10 07:51:23] 2026-01-10 12:50:30,177 | INFO     | chi2: 1.8257781469453753
[2026-01-10 07:51:23] 2026-01-10 12:50:30,178 | INFO     | current chi2=1.8257781469453753 (change=55.336772931121246 %)
[2026-01-10 07:51:23] 2026-01-10 12:50:30,178 | INFO     | sum of square deviations: 124131006142.98788
[2026-01-10 07:51:23] 2026-01-10 12:50:30,251 | INFO     | sum of deviations: 341553582210.3393
[2026-01-10 07:51:23] 2026-01-10 12:50:30,251 | INFO     | mean x: 1768026292.541384
[2026-01-10 07:51:23] 2026-01-10 12:50:30,251 | INFO     | mean y: 2514041.6282225237
[2026-01-10 07:51:23] 2026-01-10 12:50:30,252 | INFO     | intersect: -4862311697.107544
[2026-01-10 07:51:23] 2026-01-10 12:50:30,252 | INFO     | chi2: 1.825825022395557
[2026-01-10 07:51:23] 2026-01-10 12:50:30,253 | INFO     | current chi2=1.825825022395557 (change=-0.0025674231154588323 %)
[2026-01-10 07:51:23] 2026-01-10 12:50:30,253 | INFO     | right removable region: 736
[2026-01-10 07:51:23] 2026-01-10 12:50:30,254 | INFO     | sum of square deviations: 126674412154.78719
[2026-01-10 07:51:23] 2026-01-10 12:50:30,276 | INFO     | sum of deviations: 61190960803.730576
[2026-01-10 07:51:23] 2026-01-10 12:50:30,276 | INFO     | mean x: 1768026750.0404313
[2026-01-10 07:51:23] 2026-01-10 12:50:30,276 | INFO     | mean y: 2513933.8423180594
[2026-01-10 07:51:23] 2026-01-10 12:50:30,276 | INFO     | intersect: -851543754.0629078
[2026-01-10 07:51:23] 2026-01-10 12:50:30,277 | INFO     | chi2: 2.4500297988625235
[2026-01-10 07:51:23] 2026-01-10 12:50:30,278 | INFO     | current chi2=2.4500297988625235 (change=40.06597273869655 %)
[2026-01-10 07:51:23] 2026-01-10 12:50:30,278 | INFO     | sum of square deviations: 124130743110.90395
[2026-01-10 07:51:23] 2026-01-10 12:50:30,340 | INFO     | sum of deviations: 23023598261.95378
[2026-01-10 07:51:23] 2026-01-10 12:50:30,343 | INFO     | mean x: 1768026902.5427408
[2026-01-10 07:51:23] 2026-01-10 12:50:30,343 | INFO     | mean y: 2516220.7951153326
[2026-01-10 07:51:23] 2026-01-10 12:50:30,343 | INFO     | intersect: -325414959.6708045
[2026-01-10 07:51:23] 2026-01-10 12:50:30,345 | INFO     | chi2: 2.3659401833782323
[2026-01-10 07:51:23] 2026-01-10 12:50:30,345 | INFO     | current chi2=2.3659401833782323 (change=3.4321874584273013 %)
[2026-01-10 07:51:23] 2026-01-10 12:50:30,345 | INFO     | left removable region: 20
[2026-01-10 07:51:23] 2026-01-10 12:50:30,346 | INFO     | sum of square deviations: 113819350679.28923
[2026-01-10 07:51:23] 2026-01-10 12:50:30,360 | INFO     | sum of deviations: 124774888258.66496
[2026-01-10 07:51:23] 2026-01-10 12:50:30,361 | INFO     | mean x: 1768026872.0488827
[2026-01-10 07:51:23] 2026-01-10 12:50:30,361 | INFO     | mean y: 2527220.581005587
[2026-01-10 07:51:23] 2026-01-10 12:50:30,361 | INFO     | intersect: -1935678840.8805451
[2026-01-10 07:51:23] 2026-01-10 12:50:30,362 | INFO     | chi2: 0.021154484310786714
[2026-01-10 07:51:23] 2026-01-10 12:50:30,362 | INFO     | current memory leak: 1.10 B/s (using 716 data points, chi2=0.02)
[2026-01-10 07:51:23] 2026-01-10 12:50:30,364 | INFO     | could have reported an average CPU frequency of 2944 MHz (28 samples)
[2026-01-10 07:51:23] 2026-01-10 12:50:30,364 | INFO     | ..............................
[2026-01-10 07:51:23] 2026-01-10 12:50:30,364 | INFO     | . Timing measurements:
[2026-01-10 07:51:23] 2026-01-10 12:50:30,364 | INFO     | . get job = 0 s
[2026-01-10 07:51:23] 2026-01-10 12:50:30,364 | INFO     | . initial setup = 1 s
[2026-01-10 07:51:23] 2026-01-10 12:50:30,364 | INFO     | . payload setup = 14 s
[2026-01-10 07:51:23] 2026-01-10 12:50:30,364 | INFO     | . stage-in = 0 s
[2026-01-10 07:51:23] 2026-01-10 12:50:30,365 | INFO     | . payload execution = 45546 s
[2026-01-10 07:51:23] 2026-01-10 12:50:30,365 | INFO     | . stage-out = 8 s
[2026-01-10 07:51:23] 2026-01-10 12:50:30,365 | INFO     | . log creation = 2 s
[2026-01-10 07:51:23] 2026-01-10 12:50:30,365 | INFO     | ..............................
[2026-01-10 07:51:23] 2026-01-10 12:50:30,925 | INFO     | 
[2026-01-10 07:51:23] 2026-01-10 12:50:30,925 | INFO     | job summary report
[2026-01-10 07:51:23] 2026-01-10 12:50:30,925 | INFO     | --------------------------------------------------
[2026-01-10 07:51:23] 2026-01-10 12:50:30,925 | INFO     | PanDA job id: 6962917983
[2026-01-10 07:51:23] 2026-01-10 12:50:30,925 | INFO     | task id: 47898826
[2026-01-10 07:51:23] 2026-01-10 12:50:30,925 | INFO     | errors: (none)
[2026-01-10 07:51:23] 2026-01-10 12:50:30,925 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 07:51:23] 2026-01-10 12:50:30,925 | INFO     | pilot state: finished 
[2026-01-10 07:51:23] 2026-01-10 12:50:30,925 | INFO     | transexitcode: 0
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | exeerrorcode: 0
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | exeerrordiag: 
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | exitcode: 0
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | exitmsg: OK
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | cpuconsumptiontime: 59550 s
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | nevents: 400
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | neventsw: 0
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | pid: 208004
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | pgrp: 208004
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | corecount: 8
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | event service: False
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | sizes: {0: 2283798, 1: 2283997, 10: 2284259, 12: 2284287, 45565: 2329381, 45566: 2329380, 45576: 2338590, 45578: 2338646, 45616: 2338840}
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | --------------------------------------------------
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | 
[2026-01-10 07:51:23] 2026-01-10 12:50:30,926 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 07:51:23] 2026-01-10 12:50:31,080 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,080 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,080 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,082 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:51:23] 2026-01-10 12:50:31,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,082 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:51:23] 2026-01-10 12:50:31,082 | INFO     | job 6962917983 has completed (purged errors)
[2026-01-10 07:51:23] 2026-01-10 12:50:31,082 | INFO     | overall cleanup function is called
[2026-01-10 07:51:23] 2026-01-10 12:50:32,104 | INFO     | --- collectZombieJob: --- 10, [208004]
[2026-01-10 07:51:23] 2026-01-10 12:50:32,104 | INFO     | zombie collector waiting for pid 208004
[2026-01-10 07:51:23] 2026-01-10 12:50:32,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:51:23] 2026-01-10 12:50:32,104 | INFO     | collected zombie processes
[2026-01-10 07:51:23] 2026-01-10 12:50:32,104 | INFO     | will attempt to kill all subprocesses of pid=208004
[2026-01-10 07:51:23] 2026-01-10 12:50:34,434 | INFO     | process IDs to be killed: [208004] (in reverse order)
[2026-01-10 07:51:23] 2026-01-10 12:50:35,440 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:51:23] 2026-01-10 12:50:35,440 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:51:23] 2026-01-10 12:50:35,544 | INFO     | did not find any defunct processes belonging to 208004
[2026-01-10 07:51:23] 2026-01-10 12:50:35,663 | INFO     | did not find any defunct processes belonging to 208004
[2026-01-10 07:51:23] 2026-01-10 12:50:35,663 | INFO     | ready for new job
[2026-01-10 07:51:23] 2026-01-10 12:50:35,663 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:51:23] 2026-01-10 12:50:35,703 | INFO     | ***************************************
[2026-01-10 07:51:23] 2026-01-10 12:50:35,703 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:51:23] 2026-01-10 12:50:35,703 | INFO     | ***************************************
[2026-01-10 07:51:23] 2026-01-10 12:50:35,704 | INFO     | 
[2026-01-10 07:51:23] 2026-01-10 12:50:35,743 | INFO     | architecture information:
[2026-01-10 07:51:23] 2026-01-10 12:50:35,765 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:51:23] 2026-01-10 12:50:35,945 | INFO     | cat /etc/os-release:
[2026-01-10 07:51:23] NAME="CentOS Linux"
[2026-01-10 07:51:23] VERSION="7 (Core)"
[2026-01-10 07:51:23] ID="centos"
[2026-01-10 07:51:23] ID_LIKE="rhel fedora"
[2026-01-10 07:51:23] VERSION_ID="7"
[2026-01-10 07:51:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:51:23] ANSI_COLOR="0;31"
[2026-01-10 07:51:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:51:23] HOME_URL="https://www.centos.org/"
[2026-01-10 07:51:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:51:23] 
[2026-01-10 07:51:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:51:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:51:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:51:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:51:23] 
[2026-01-10 07:51:23] 2026-01-10 12:50:35,945 | INFO     | ***************************************
[2026-01-10 07:51:23] 2026-01-10 12:50:36,453 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 07:51:23] 2026-01-10 12:50:36,826 | INFO     | sufficient remaining disk space (73723281408 B)
[2026-01-10 07:51:23] 2026-01-10 12:50:36,826 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:51:23] 2026-01-10 12:50:36,827 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:51:23] 2026-01-10 12:50:36,827 | INFO     | update_server=False
[2026-01-10 07:51:23] 2026-01-10 12:50:36,827 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:51:23] 2026-01-10 12:50:36,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:51:23] 2026-01-10 12:50:36,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:51:23] 2026-01-10 12:50:36,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:51:23] 2026-01-10 12:50:36,837 | INFO     | aborting loop
[2026-01-10 07:51:23] 2026-01-10 12:50:37,193 | INFO     | all data control threads have been joined
[2026-01-10 07:51:23] 2026-01-10 12:50:37,760 | INFO     | all job control threads have been joined
[2026-01-10 07:51:23] 2026-01-10 12:50:37,833 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:37,834 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:37,843 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:37,916 | INFO     | all payload control threads have been joined
[2026-01-10 07:51:23] 2026-01-10 12:50:38,203 | INFO     | [data] control thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:38,445 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:38,469 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:38,473 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:38,549 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:38,766 | INFO     | [job] control thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:38,845 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:38,883 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:38,931 | INFO     | [job] validate thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:38,937 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:38,942 | INFO     | [payload] control thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:39,053 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:50:39,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:51:23] 2026-01-10 12:50:43,840 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:51:23] 2026-01-10 12:51:03,924 | INFO     | PID=183697 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 07:51:23] 2026-01-10 12:51:03,925 | INFO     | .. there are 12 such processes running
[2026-01-10 07:51:23] 2026-01-10 12:51:03,926 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:51:23] 2026-01-10 12:51:03,926 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:51:23] 2026-01-10 12:51:03,926 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:51:23] 2026-01-10 12:51:12,810 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:51:23] 2026-01-10 12:51:14,328 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648580138816)>', '<ExcThread(monitor, started 140648225171200)>']
[2026-01-10 07:51:23] 2026-01-10 12:51:15,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:51:23] 2026-01-10 12:51:15,029 | INFO     | [monitor] control thread has ended
[2026-01-10 07:51:23] 2026-01-10 12:51:19,354 | INFO     | all workflow threads have been joined
[2026-01-10 07:51:23] 2026-01-10 12:51:19,354 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:51:23] 2026-01-10 12:51:19,354 | INFO     | traces error code: 0
[2026-01-10 07:51:23] 2026-01-10 12:51:19,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:51:23] 2026-01-10 12:51:20,739 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:51:23] 2026-01-10 12:51:20,769 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:51:23] 2026-01-10 12:51:20,812 [wrapper] pilotpid: 183697
[2026-01-10 07:51:23] 2026-01-10 12:51:20,870 [wrapper] Pilot exit status: 0
[2026-01-10 07:51:23] 2026-01-10 12:51:21,131 [wrapper] pandaids: 6962917983 6962917983
[2026-01-10 07:51:23] 2026-01-10 12:51:21,951 [wrapper] cleanup supervisor_pilot 2132172 183698
[2026-01-10 07:51:23] 2026-01-10 12:51:21,961 [wrapper] Test setup, not cleaning
[2026-01-10 07:51:23] 2026-01-10 12:51:21,963 [wrapper] apfmon messages muted
[2026-01-10 07:51:23] 2026-01-10 12:51:21,966 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:51:23] 2026-01-10 12:51:21,968 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:51:23]  *** Error codes and diagnostics ***
[2026-01-10 07:51:23]     "exeErrorCode": 0,
[2026-01-10 07:51:23]     "exeErrorDiag": "",
[2026-01-10 07:51:23]     "pilotErrorCode": 0,
[2026-01-10 07:51:23]     "pilotErrorDiag": "",
[2026-01-10 07:51:23]  *** Listing of results directory ***
[2026-01-10 07:51:23] total 676176
[2026-01-10 07:51:23] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 07:51:23] -rwx------. 1 boincer umatlas     36322 Jan  8 03:06 runpilot2-wrapper.sh
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:11 queuedata.json
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:11 pilot3.tar.gz
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas       100 Jan  9 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:51:23] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 17:56 run_atlas
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas       105 Jan  9 17:56 job.xml
[2026-01-10 07:51:23] -rw-r--r--. 3 boincer umatlas 225211543 Jan  9 17:56 EVNT.47898824._000665.pool.root.1
[2026-01-10 07:51:23] -rw-r--r--. 3 boincer umatlas 225211543 Jan  9 17:56 ATLAS.root_0
[2026-01-10 07:51:23] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:56 start_atlas.sh
[2026-01-10 07:51:23] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 17:56 shared
[2026-01-10 07:51:23] -rw-r--r--. 2 boincer umatlas    592401 Jan  9 17:56 input.tar.gz
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas         0 Jan  9 17:56 boinc_lockfile
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 19:09 pandaJob.out
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas        57 Jan  9 19:09 setup.sh.local
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas    989374 Jan  9 19:09 agis_schedconf.cvmfs.json
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas 224809849 Jan 10 07:46 HITS.47898826._020063.pool.root.1
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas       531 Jan 10 07:47 boinc_task_state.xml
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas      6841 Jan 10 07:49 init_data.xml
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas      1056 Jan 10 07:49 memory_monitor_summary.json
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas   1516240 Jan 10 07:49 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas    863794 Jan 10 07:49 log.47898826._020063.job.log.tgz.1
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas      7852 Jan 10 07:50 heartbeat.json
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas        96 Jan 10 07:51 pilot_heartbeat.json
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas        28 Jan 10 07:51 wrapper_checkpoint.txt
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 07:51 boinc_mmap_file
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas      4823 Jan 10 07:51 pilotlog.txt
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas   5759419 Jan 10 07:51 log.47898826._020063.job.log.1
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas       357 Jan 10 07:51 output.list
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas       620 Jan 10 07:51 runtime_log
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas   6645760 Jan 10 07:51 result.tar.gz
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas       790 Jan 10 07:51 usDODmND0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCfeKDmCsYLQo.diag
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas      9438 Jan 10 07:51 runtime_log.err
[2026-01-10 07:51:23] -rw-r--r--. 1 boincer umatlas     23500 Jan 10 07:51 stderr.txt
[2026-01-10 07:51:23] HITS file was successfully produced:
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas 224809849 Jan 10 07:46 shared/HITS.pool.root.1
[2026-01-10 07:51:23]  *** Contents of shared directory: ***
[2026-01-10 07:51:23] total 446572
[2026-01-10 07:51:23] -rw-r--r--. 3 boincer umatlas 225211543 Jan  9 17:56 ATLAS.root_0
[2026-01-10 07:51:23] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:56 start_atlas.sh
[2026-01-10 07:51:23] -rw-r--r--. 2 boincer umatlas    592401 Jan  9 17:56 input.tar.gz
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas 224809849 Jan 10 07:46 HITS.pool.root.1
[2026-01-10 07:51:23] -rw-------. 1 boincer umatlas   6645760 Jan 10 07:51 result.tar.gz
07:51:25 (173025): run_atlas exited; CPU time 60799.297180
07:51:25 (173025): called boinc_finish(0)

</stderr_txt>
]]>

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