Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:11:40 (726890): wrapper (7.7.26015): starting
09:11:40 (726890): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 09:11:40] Arguments: --nthreads 4
[2026-01-10 09:11:40] Threads: 4
[2026-01-10 09:11:40] Checking for CVMFS
[2026-01-10 09:11:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:11:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:11:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:11:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:11:40] 2.9.2.0 3067 2557 94716 154972 3 57 21221721 36864001 0 130560 0 1879991 99.990 89330 5174 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 09:11:40] CVMFS is ok
[2026-01-10 09:11:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:11:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:11:40] Further information can be found at the LHC@home message board.
[2026-01-10 09:11:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:11:40] Checking for apptainer binary...
[2026-01-10 09:11:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:11:40] Running /usr/bin/apptainer --version
[2026-01-10 09:11:40] apptainer version 1.4.1-1.1
[2026-01-10 09:11:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:11:40] thA383a
[2026-01-10 09:11:40] apptainer works
[2026-01-10 09:11:40] Set ATHENA_PROC_NUMBER=4
[2026-01-10 09:11:40] Set ATHENA_CORE_NUMBER=4
[2026-01-10 09:11:40] Starting ATLAS job with PandaID=6963189647
[2026-01-10 09:11:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:55:01]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | job 6963189647 has completed (purged errors)
[2026-01-10 10:55:01] 2026-01-10 09:54:23,495 | INFO     | overall cleanup function is called
[2026-01-10 10:55:01] 2026-01-10 09:54:24,502 | INFO     | --- collectZombieJob: --- 10, [737262]
[2026-01-10 10:55:01] 2026-01-10 09:54:24,502 | INFO     | zombie collector waiting for pid 737262
[2026-01-10 10:55:01] 2026-01-10 09:54:24,502 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:55:01] 2026-01-10 09:54:24,502 | INFO     | collected zombie processes
[2026-01-10 10:55:01] 2026-01-10 09:54:24,502 | INFO     | will attempt to kill all subprocesses of pid=737262
[2026-01-10 10:55:01] 2026-01-10 09:54:24,546 | INFO     | process IDs to be killed: [737262] (in reverse order)
[2026-01-10 10:55:01] 2026-01-10 09:54:24,579 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:55:01] 2026-01-10 09:54:24,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:55:01] 2026-01-10 09:54:24,581 | INFO     | did not find any defunct processes belonging to 737262
[2026-01-10 10:55:01] 2026-01-10 09:54:24,582 | INFO     | did not find any defunct processes belonging to 737262
[2026-01-10 10:55:01] 2026-01-10 09:54:24,582 | INFO     | ready for new job
[2026-01-10 10:55:01] 2026-01-10 09:54:24,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:55:01] 2026-01-10 09:54:24,583 | INFO     | ***************************************
[2026-01-10 10:55:01] 2026-01-10 09:54:24,583 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:55:01] 2026-01-10 09:54:24,583 | INFO     | ***************************************
[2026-01-10 10:55:01] 2026-01-10 09:54:24,583 | INFO     | 
[2026-01-10 10:55:01] 2026-01-10 09:54:24,584 | INFO     | architecture information:
[2026-01-10 10:55:01] 2026-01-10 09:54:24,584 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:55:01] 2026-01-10 09:54:24,598 | INFO     | cat /etc/os-release:
[2026-01-10 10:55:01] NAME="CentOS Linux"
[2026-01-10 10:55:01] VERSION="7 (Core)"
[2026-01-10 10:55:01] ID="centos"
[2026-01-10 10:55:01] ID_LIKE="rhel fedora"
[2026-01-10 10:55:01] VERSION_ID="7"
[2026-01-10 10:55:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:55:01] ANSI_COLOR="0;31"
[2026-01-10 10:55:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:55:01] HOME_URL="https://www.centos.org/"
[2026-01-10 10:55:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:55:01] 
[2026-01-10 10:55:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:55:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:55:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:55:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:55:01] 
[2026-01-10 10:55:01] 2026-01-10 09:54:24,598 | INFO     | ***************************************
[2026-01-10 10:55:01] 2026-01-10 09:54:25,101 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 10:55:01] 2026-01-10 09:54:25,118 | INFO     | sufficient remaining disk space (240154312704 B)
[2026-01-10 10:55:01] 2026-01-10 09:54:25,118 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:55:01] 2026-01-10 09:54:25,118 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:55:01] 2026-01-10 09:54:25,118 | INFO     | update_server=False
[2026-01-10 10:55:01] 2026-01-10 09:54:25,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:55:01] 2026-01-10 09:54:25,119 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:55:01] 2026-01-10 09:54:25,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:55:01] 2026-01-10 09:54:25,462 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:55:01] 2026-01-10 09:54:25,462 | INFO     | aborting loop
[2026-01-10 10:55:01] 2026-01-10 09:54:25,515 | INFO     | all payload control threads have been joined
[2026-01-10 10:55:01] 2026-01-10 09:54:25,673 | INFO     | all data control threads have been joined
[2026-01-10 10:55:01] 2026-01-10 09:54:26,124 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:26,124 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:26,393 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:26,414 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:26,454 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:26,467 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:26,470 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:26,521 | INFO     | [payload] control thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:26,679 | INFO     | [data] control thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:26,822 | INFO     | all job control threads have been joined
[2026-01-10 10:55:01] 2026-01-10 09:54:27,125 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:27,308 | INFO     | [job] validate thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:27,382 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:27,473 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:27,675 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:27,828 | INFO     | [job] control thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:27,884 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:55:01] 2026-01-10 09:54:31,892 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:55:01] 2026-01-10 09:54:55,171 | INFO     | PID=730685 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 10:55:01] 2026-01-10 09:54:55,171 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:55:01] 2026-01-10 09:54:55,171 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:55:01] 2026-01-10 09:54:55,171 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:55:01] 2026-01-10 09:54:55,747 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:55:01] 2026-01-10 09:54:56,275 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620738115392)>', '<ExcThread(monitor, started 140619427075840)>']
[2026-01-10 10:55:01] 2026-01-10 09:54:57,182 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:55:01] 2026-01-10 09:54:57,182 | INFO     | [monitor] control thread has ended
[2026-01-10 10:55:01] 2026-01-10 09:55:01,301 | INFO     | all workflow threads have been joined
[2026-01-10 10:55:01] 2026-01-10 09:55:01,301 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:55:01] 2026-01-10 09:55:01,301 | INFO     | traces error code: 0
[2026-01-10 10:55:01] 2026-01-10 09:55:01,301 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:55:01] 2026-01-10 09:55:01,380 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:55:01] 2026-01-10 09:55:01,384 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:55:01] 2026-01-10 09:55:01,388 [wrapper] pilotpid: 730685
[2026-01-10 10:55:01] 2026-01-10 09:55:01,392 [wrapper] Pilot exit status: 0
[2026-01-10 10:55:01] 2026-01-10 09:55:01,403 [wrapper] pandaids: 6963189647
[2026-01-10 10:55:01] 2026-01-10 09:55:01,425 [wrapper] cleanup supervisor_pilot  750336 730686
[2026-01-10 10:55:01] 2026-01-10 09:55:01,429 [wrapper] Test setup, not cleaning
[2026-01-10 10:55:01] 2026-01-10 09:55:01,433 [wrapper] apfmon messages muted
[2026-01-10 10:55:01] 2026-01-10 09:55:01,437 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:55:01] 2026-01-10 09:55:01,440 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:55:01]  *** Error codes and diagnostics ***
[2026-01-10 10:55:01]     "exeErrorCode": 0,
[2026-01-10 10:55:01]     "exeErrorDiag": "",
[2026-01-10 10:55:01]     "pilotErrorCode": 0,
[2026-01-10 10:55:01]     "pilotErrorDiag": "",
[2026-01-10 10:55:01]  *** Listing of results directory ***
[2026-01-10 10:55:01] total 447860
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 10:55:01] -rwx------ 1 boinc boinc     36322 Jan  9 05:23 runpilot2-wrapper.sh
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:24 queuedata.json
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc       100 Jan 10 09:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:55:01] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 09:11 run_atlas
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc       105 Jan 10 09:11 job.xml
[2026-01-10 10:55:01] -rw-r--r-- 2 boinc boinc 226879329 Jan 10 09:11 EVNT.47898824._001479.pool.root.1
[2026-01-10 10:55:01] -rw-r--r-- 2 boinc boinc    592397 Jan 10 09:11 input.tar.gz
[2026-01-10 10:55:01] -rw-r--r-- 2 boinc boinc     15847 Jan 10 09:11 start_atlas.sh
[2026-01-10 10:55:01] drwxrwx--x 2 boinc boinc      4096 Jan 10 09:11 shared
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc         0 Jan 10 09:11 boinc_setup_complete
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc      6377 Jan 10 09:11 init_data.xml
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc         0 Jan 10 09:11 boinc_lockfile
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc      2520 Jan 10 09:11 pandaJob.out
[2026-01-10 10:55:01] -rw------- 1 boinc boinc    989374 Jan 10 09:11 agis_schedconf.cvmfs.json
[2026-01-10 10:55:01] -rw------- 1 boinc boinc   1516240 Jan 10 09:11 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:55:01] drwx------ 5 boinc boinc      4096 Jan 10 09:11 pilot3
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc       529 Jan 10 10:53 boinc_task_state.xml
[2026-01-10 10:55:01] -rw------- 1 boinc boinc 225453563 Jan 10 10:53 HITS.47898826._038516.pool.root.1
[2026-01-10 10:55:01] -rw------- 1 boinc boinc      1020 Jan 10 10:54 memory_monitor_summary.json
[2026-01-10 10:55:01] -rw------- 1 boinc boinc    293535 Jan 10 10:54 log.47898826._038516.job.log.tgz.1
[2026-01-10 10:55:01] -rw------- 1 boinc boinc        95 Jan 10 10:54 pilot_heartbeat.json
[2026-01-10 10:55:01] -rw------- 1 boinc boinc      7765 Jan 10 10:54 heartbeat.json
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc      8192 Jan 10 10:54 boinc_mmap_file
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc        27 Jan 10 10:54 wrapper_checkpoint.txt
[2026-01-10 10:55:01] -rw------- 1 boinc boinc      4751 Jan 10 10:55 pilotlog.txt
[2026-01-10 10:55:01] -rw------- 1 boinc boinc    891923 Jan 10 10:55 log.47898826._038516.job.log.1
[2026-01-10 10:55:01] -rw------- 1 boinc boinc       357 Jan 10 10:55 output.list
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc       620 Jan 10 10:55 runtime_log
[2026-01-10 10:55:01] -rw------- 1 boinc boinc   1208320 Jan 10 10:55 result.tar.gz
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc      8902 Jan 10 10:55 runtime_log.err
[2026-01-10 10:55:01] -rw------- 1 boinc boinc       660 Jan 10 10:55 BkoKDmrCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiygKDmFUqe0n.diag
[2026-01-10 10:55:01] -rw-r--r-- 1 boinc boinc     11921 Jan 10 10:55 stderr.txt
[2026-01-10 10:55:01] HITS file was successfully produced:
[2026-01-10 10:55:01] -rw------- 1 boinc boinc 225453563 Jan 10 10:53 shared/HITS.pool.root.1
[2026-01-10 10:55:01]  *** Contents of shared directory: ***
[2026-01-10 10:55:01] total 443520
[2026-01-10 10:55:01] -rw-r--r-- 2 boinc boinc 226879329 Jan 10 09:11 ATLAS.root_0
[2026-01-10 10:55:01] -rw-r--r-- 2 boinc boinc    592397 Jan 10 09:11 input.tar.gz
[2026-01-10 10:55:01] -rw-r--r-- 2 boinc boinc     15847 Jan 10 09:11 start_atlas.sh
[2026-01-10 10:55:01] -rw------- 1 boinc boinc 225453563 Jan 10 10:53 HITS.pool.root.1
[2026-01-10 10:55:01] -rw------- 1 boinc boinc   1208320 Jan 10 10:55 result.tar.gz
10:55:02 (726890): run_atlas exited; CPU time 23498.033194
10:55:02 (726890): called boinc_finish(0)

</stderr_txt>
]]>

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