Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:00:59 (21171): wrapper (7.7.26015): starting
18:00:59 (21171): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 18:00:59] Arguments: --nthreads 12
[2026-01-09 18:00:59] Threads: 12
[2026-01-09 18:00:59] Checking for CVMFS
[2026-01-09 18:00:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:00:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:00:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:00:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:00:59] 2.11.2.0 3009 136941 100044 154959 3 81 13399138 20275201 1 130560 0 49744933 99.879 8118353 39491 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 18:00:59] CVMFS is ok
[2026-01-09 18:00:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:00:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:00:59] Further information can be found at the LHC@home message board.
[2026-01-09 18:00:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:00:59] Checking for apptainer binary...
[2026-01-09 18:00:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:00:59] Running /usr/bin/apptainer --version
[2026-01-09 18:00:59] apptainer version 1.3.2-1.el7
[2026-01-09 18:00:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:01:01] c-115-42.aglt2.org
[2026-01-09 18:01:01] apptainer works
[2026-01-09 18:01:01] Set ATHENA_PROC_NUMBER=12
[2026-01-09 18:01:01] Set ATHENA_CORE_NUMBER=12
[2026-01-09 18:01:01] Starting ATLAS job with PandaID=6963188267
[2026-01-09 18:01:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:32:29]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:32:29]  scope=mc23_13p6TeV
[2026-01-09 19:32:29]  status=None
[2026-01-09 19:32:29]  status_code=0
[2026-01-09 19:32:29]  storage_token=
[2026-01-09 19:32:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963188267/log.47898826._037419.job.log.tgz.1
[2026-01-09 19:32:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/46/log.47898826._037419.job.log.tgz.1
[2026-01-09 19:32:29]  workdir=None
[2026-01-09 19:32:29] ]
[2026-01-09 19:32:29] 2026-01-10 00:31:22,235 | INFO     | transferring file log.47898826._037419.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963188267/log.47898826._037419.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 19:32:29] 2026-01-10 00:31:22,235 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963188267/log.47898826._037419.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._037419.job
[2026-01-09 19:32:29] 2026-01-10 00:31:22,255 | INFO     | adding to output.list: log.47898826._037419.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/46/log.47898826._037419.job.log.tg
[2026-01-09 19:32:29] 2026-01-10 00:31:22,256 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 19:32:29] 2026-01-10 00:31:22,256 | INFO     | summary of transferred files:
[2026-01-09 19:32:29] 2026-01-10 00:31:22,257 | INFO     |  -- lfn=log.47898826._037419.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 19:32:29] 2026-01-10 00:31:22,257 | INFO     | stage-out finished correctly
[2026-01-09 19:32:29] 2026-01-10 00:31:22,656 | INFO     | monitor loop #404: job 0:6963188267 is in state 'finished'
[2026-01-09 19:32:29] 2026-01-10 00:31:22,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:32:29] 2026-01-10 00:31:23,333 | INFO     | time since job start (5408s) is within the limit (349056.0s)
[2026-01-09 19:32:29] 2026-01-10 00:31:25,159 | INFO     | monitor loop #405: job 0:6963188267 is in state 'finished'
[2026-01-09 19:32:29] 2026-01-10 00:31:25,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:32:29] 2026-01-10 00:31:25,338 | INFO     | time since job start (5410s) is within the limit (349056.0s)
[2026-01-09 19:32:29] 2026-01-10 00:31:25,578 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 19:32:29] 2026-01-10 00:31:25,649 | INFO     | job 6963188267 has state=finished
[2026-01-09 19:32:29] 2026-01-10 00:31:25,650 | INFO     | preparing for final server update for job 6963188267 in state='finished'
[2026-01-09 19:32:29] 2026-01-10 00:31:25,650 | INFO     | this job has now completed (state=finished)
[2026-01-09 19:32:29] 2026-01-10 00:31:25,650 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 19:32:29] 2026-01-10 00:31:25,650 | INFO     | log transfer has been attempted: DONE
[2026-01-09 19:32:29] 2026-01-10 00:31:25,650 | INFO     | job 6963188267 has finished - writing final server update
[2026-01-09 19:32:29] 2026-01-10 00:31:25,651 | INFO     | total number of processed events: 400 (read)
[2026-01-09 19:32:29] 2026-01-10 00:31:25,651 | INFO     | executing command: lscpu
[2026-01-09 19:32:29] 2026-01-10 00:31:25,679 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 19:32:29] 2026-01-10 00:31:27,345 | INFO     | time since job start (5412s) is within the limit (349056.0s)
[2026-01-09 19:32:29] 2026-01-10 00:31:27,663 | INFO     | monitor loop #406: job 0:6963188267 is in state 'finished'
[2026-01-09 19:32:29] 2026-01-10 00:31:27,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:32:29] 2026-01-10 00:31:29,351 | INFO     | time since job start (5414s) is within the limit (349056.0s)
[2026-01-09 19:32:29] 2026-01-10 00:31:30,170 | INFO     | monitor loop #407: job 0:6963188267 is in state 'finished'
[2026-01-09 19:32:29] 2026-01-10 00:31:30,170 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:32:29] 2026-01-10 00:31:31,356 | INFO     | time since job start (5416s) is within the limit (349056.0s)
[2026-01-09 19:32:29] 2026-01-10 00:31:31,469 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 19:32:29] 2026-01-10 00:31:31,473 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2026-01-09 19:32:29] 2026-01-10 00:31:31,476 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963188267/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:32:29] 2026-01-10 00:31:31,476 | INFO     | extracted standard info from prmon json
[2026-01-09 19:32:29] 2026-01-10 00:31:31,476 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 19:32:29] 2026-01-10 00:31:31,476 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 19:32:29] 2026-01-10 00:31:31,477 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 19:32:29] 2026-01-10 00:31:31,477 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 19:32:29] 2026-01-10 00:31:31,478 | INFO     | fitting pss+swap vs Time
[2026-01-09 19:32:29] 2026-01-10 00:31:31,479 | INFO     | sum of square deviations: 170944600.5
[2026-01-09 19:32:29] 2026-01-10 00:31:31,479 | INFO     | sum of deviations: 915902617.0
[2026-01-09 19:32:29] 2026-01-10 00:31:31,479 | INFO     | mean x: 1768002479.5
[2026-01-09 19:32:29] 2026-01-10 00:31:31,479 | INFO     | mean y: 2692574.2926829266
[2026-01-09 19:32:29] 2026-01-10 00:31:31,479 | INFO     | intersect: -9470072830.99158
[2026-01-09 19:32:29] 2026-01-10 00:31:31,480 | INFO     | chi2: 0.012169684692611194
[2026-01-09 19:32:29] 2026-01-10 00:31:31,480 | INFO     | current memory leak: 5.36 B/s (using 82 data points, chi2=0.01)
[2026-01-09 19:32:29] 2026-01-10 00:31:31,480 | INFO     | could have reported an average CPU frequency of 2189 MHz (6 samples)
[2026-01-09 19:32:29] 2026-01-10 00:31:31,480 | INFO     | ..............................
[2026-01-09 19:32:29] 2026-01-10 00:31:31,480 | INFO     | . Timing measurements:
[2026-01-09 19:32:29] 2026-01-10 00:31:31,480 | INFO     | . get job = 0 s
[2026-01-09 19:32:29] 2026-01-10 00:31:31,480 | INFO     | . initial setup = 2 s
[2026-01-09 19:32:29] 2026-01-10 00:31:31,480 | INFO     | . payload setup = 7 s
[2026-01-09 19:32:29] 2026-01-10 00:31:31,481 | INFO     | . stage-in = 0 s
[2026-01-09 19:32:29] 2026-01-10 00:31:31,481 | INFO     | . payload execution = 5379 s
[2026-01-09 19:32:29] 2026-01-10 00:31:31,481 | INFO     | . stage-out = 0 s
[2026-01-09 19:32:29] 2026-01-10 00:31:31,481 | INFO     | . log creation = 0 s
[2026-01-09 19:32:29] 2026-01-10 00:31:31,481 | INFO     | ..............................
[2026-01-09 19:32:29] 2026-01-10 00:31:31,757 | INFO     | 
[2026-01-09 19:32:29] 2026-01-10 00:31:31,757 | INFO     | job summary report
[2026-01-09 19:32:29] 2026-01-10 00:31:31,757 | INFO     | --------------------------------------------------
[2026-01-09 19:32:29] 2026-01-10 00:31:31,757 | INFO     | PanDA job id: 6963188267
[2026-01-09 19:32:29] 2026-01-10 00:31:31,758 | INFO     | task id: 47898826
[2026-01-09 19:32:29] 2026-01-10 00:31:31,758 | INFO     | errors: (none)
[2026-01-09 19:32:29] 2026-01-10 00:31:31,758 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 19:32:29] 2026-01-10 00:31:31,758 | INFO     | pilot state: finished 
[2026-01-09 19:32:29] 2026-01-10 00:31:31,758 | INFO     | transexitcode: 0
[2026-01-09 19:32:29] 2026-01-10 00:31:31,758 | INFO     | exeerrorcode: 0
[2026-01-09 19:32:29] 2026-01-10 00:31:31,759 | INFO     | exeerrordiag: 
[2026-01-09 19:32:29] 2026-01-10 00:31:31,759 | INFO     | exitcode: 0
[2026-01-09 19:32:29] 2026-01-10 00:31:31,759 | INFO     | exitmsg: OK
[2026-01-09 19:32:29] 2026-01-10 00:31:31,759 | INFO     | cpuconsumptiontime: 60032 s
[2026-01-09 19:32:29] 2026-01-10 00:31:31,759 | INFO     | nevents: 400
[2026-01-09 19:32:29] 2026-01-10 00:31:31,759 | INFO     | neventsw: 0
[2026-01-09 19:32:29] 2026-01-10 00:31:31,759 | INFO     | pid: 31286
[2026-01-09 19:32:29] 2026-01-10 00:31:31,760 | INFO     | pgrp: 31286
[2026-01-09 19:32:29] 2026-01-10 00:31:31,760 | INFO     | corecount: 12
[2026-01-09 19:32:29] 2026-01-10 00:31:31,760 | INFO     | event service: False
[2026-01-09 19:32:29] 2026-01-10 00:31:31,760 | INFO     | sizes: {0: 2283800, 1: 2283999, 5: 2284261, 11: 2284317, 5389: 2310826, 5390: 2310825, 5391: 2320007, 5394: 2320063, 5400: 2320257}
[2026-01-09 19:32:29] 2026-01-10 00:31:31,760 | INFO     | --------------------------------------------------
[2026-01-09 19:32:29] 2026-01-10 00:31:31,760 | INFO     | 
[2026-01-09 19:32:29] 2026-01-10 00:31:31,761 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 19:32:29] 2026-01-10 00:31:31,784 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,784 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,784 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,784 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,785 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,785 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,785 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,785 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,785 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,785 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,786 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,786 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,786 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,786 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,786 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,786 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,786 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,787 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:32:29] 2026-01-10 00:31:31,787 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,787 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:32:29] 2026-01-10 00:31:31,787 | INFO     | job 6963188267 has completed (purged errors)
[2026-01-09 19:32:29] 2026-01-10 00:31:31,787 | INFO     | overall cleanup function is called
[2026-01-09 19:32:29] 2026-01-10 00:31:32,794 | INFO     | --- collectZombieJob: --- 10, [31286]
[2026-01-09 19:32:29] 2026-01-10 00:31:32,794 | INFO     | zombie collector waiting for pid 31286
[2026-01-09 19:32:29] 2026-01-10 00:31:32,799 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:32:29] 2026-01-10 00:31:32,799 | INFO     | collected zombie processes
[2026-01-09 19:32:29] 2026-01-10 00:31:32,799 | INFO     | will attempt to kill all subprocesses of pid=31286
[2026-01-09 19:32:29] 2026-01-10 00:31:32,885 | INFO     | process IDs to be killed: [31286] (in reverse order)
[2026-01-09 19:32:29] 2026-01-10 00:31:32,934 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:32:29] 2026-01-10 00:31:32,934 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:32:29] 2026-01-10 00:31:32,937 | INFO     | did not find any defunct processes belonging to 31286
[2026-01-09 19:32:29] 2026-01-10 00:31:32,939 | INFO     | did not find any defunct processes belonging to 31286
[2026-01-09 19:32:29] 2026-01-10 00:31:32,939 | INFO     | ready for new job
[2026-01-09 19:32:29] 2026-01-10 00:31:32,939 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:32:29] 2026-01-10 00:31:32,941 | INFO     | ***************************************
[2026-01-09 19:32:29] 2026-01-10 00:31:32,941 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:32:29] 2026-01-10 00:31:32,941 | INFO     | ***************************************
[2026-01-09 19:32:29] 2026-01-10 00:31:32,941 | INFO     | 
[2026-01-09 19:32:29] 2026-01-10 00:31:32,941 | INFO     | architecture information:
[2026-01-09 19:32:29] 2026-01-10 00:31:32,942 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:32:29] 2026-01-10 00:31:32,957 | INFO     | cat /etc/os-release:
[2026-01-09 19:32:29] NAME="CentOS Linux"
[2026-01-09 19:32:29] VERSION="7 (Core)"
[2026-01-09 19:32:29] ID="centos"
[2026-01-09 19:32:29] ID_LIKE="rhel fedora"
[2026-01-09 19:32:29] VERSION_ID="7"
[2026-01-09 19:32:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:32:29] ANSI_COLOR="0;31"
[2026-01-09 19:32:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:32:29] HOME_URL="https://www.centos.org/"
[2026-01-09 19:32:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:32:29] 
[2026-01-09 19:32:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:32:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:32:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:32:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:32:29] 
[2026-01-09 19:32:29] 2026-01-10 00:31:32,957 | INFO     | ***************************************
[2026-01-09 19:32:29] 2026-01-10 00:31:33,460 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 19:32:29] 2026-01-10 00:31:33,476 | INFO     | sufficient remaining disk space (18541969408 B)
[2026-01-09 19:32:29] 2026-01-10 00:31:33,477 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:32:29] 2026-01-10 00:31:33,477 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:32:29] 2026-01-10 00:31:33,477 | INFO     | update_server=False
[2026-01-09 19:32:29] 2026-01-10 00:31:33,477 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:32:29] 2026-01-10 00:31:33,478 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:32:29] 2026-01-10 00:31:33,478 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:32:29] 2026-01-10 00:31:33,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:32:29] 2026-01-10 00:31:33,678 | INFO     | aborting loop
[2026-01-09 19:32:29] 2026-01-10 00:31:33,796 | INFO     | all data control threads have been joined
[2026-01-09 19:32:29] 2026-01-10 00:31:34,284 | INFO     | all job control threads have been joined
[2026-01-09 19:32:29] 2026-01-10 00:31:34,480 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:34,483 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:34,593 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:34,655 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:34,684 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:34,692 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:34,764 | INFO     | all payload control threads have been joined
[2026-01-09 19:32:29] 2026-01-10 00:31:34,800 | INFO     | [data] control thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:35,159 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:35,289 | INFO     | [job] control thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:35,484 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:35,640 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:35,769 | INFO     | [payload] control thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:35,916 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:35,919 | INFO     | [job] validate thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:36,158 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:32:29] 2026-01-10 00:31:40,164 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:31:43,785 | INFO     | job.realtimelogging is not enabled
[2026-01-09 19:32:29] 2026-01-10 00:31:44,791 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:32:29] 2026-01-10 00:32:04,555 | INFO     | PID=24915 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 19:32:29] 2026-01-10 00:32:04,555 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:32:29] 2026-01-10 00:32:04,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:32:29] 2026-01-10 00:32:04,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:32:29] 2026-01-10 00:32:24,173 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:32:29] 2026-01-10 00:32:24,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140451853715264)>', '<ExcThread(monitor, started 140450522457856)>']
[2026-01-09 19:32:29] 2026-01-10 00:32:24,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:32:29] 2026-01-10 00:32:24,657 | INFO     | [monitor] control thread has ended
[2026-01-09 19:32:29] 2026-01-10 00:32:29,229 | INFO     | all workflow threads have been joined
[2026-01-09 19:32:29] 2026-01-10 00:32:29,229 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:32:29] 2026-01-10 00:32:29,230 | INFO     | traces error code: 0
[2026-01-09 19:32:29] 2026-01-10 00:32:29,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:32:29] 2026-01-10 00:32:29,313 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:32:29] 2026-01-10 00:32:29,317 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:32:29] 2026-01-10 00:32:29,321 [wrapper] pilotpid: 24915
[2026-01-09 19:32:29] 2026-01-10 00:32:29,324 [wrapper] Pilot exit status: 0
[2026-01-09 19:32:29] 2026-01-10 00:32:29,339 [wrapper] pandaids: 6963188267
[2026-01-09 19:32:29] 2026-01-10 00:32:29,384 [wrapper] cleanup supervisor_pilot  7181 24916
[2026-01-09 19:32:29] 2026-01-10 00:32:29,388 [wrapper] Test setup, not cleaning
[2026-01-09 19:32:29] 2026-01-10 00:32:29,392 [wrapper] apfmon messages muted
[2026-01-09 19:32:29] 2026-01-10 00:32:29,396 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:32:29] 2026-01-10 00:32:29,400 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:32:29]  *** Error codes and diagnostics ***
[2026-01-09 19:32:29]     "exeErrorCode": 0,
[2026-01-09 19:32:29]     "exeErrorDiag": "",
[2026-01-09 19:32:29]     "pilotErrorCode": 0,
[2026-01-09 19:32:29]     "pilotErrorDiag": "",
[2026-01-09 19:32:29]  *** Listing of results directory ***
[2026-01-09 19:32:29] total 435628
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:21 queuedata.json
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 19:32:29] -rwx------ 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas       100 Jan  9 18:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:32:29] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 18:00 run_atlas
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas       105 Jan  9 18:00 job.xml
[2026-01-09 19:32:29] -rw-r--r-- 2 boincer umatlas 224620357 Jan  9 18:00 EVNT.47898824._001435.pool.root.1
[2026-01-09 19:32:29] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 18:00 start_atlas.sh
[2026-01-09 19:32:29] drwxrwx--x 2 boincer umatlas      4096 Jan  9 18:00 shared
[2026-01-09 19:32:29] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 18:00 input.tar.gz
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas         0 Jan  9 18:00 boinc_lockfile
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 18:01 pandaJob.out
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas        57 Jan  9 18:01 setup.sh.local
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas    989375 Jan  9 18:01 agis_schedconf.cvmfs.json
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas   1516240 Jan  9 18:01 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:32:29] drwx------ 5 boincer umatlas      4096 Jan  9 18:01 pilot3
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas      5954 Jan  9 19:28 init_data.xml
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas 215172814 Jan  9 19:30 HITS.47898826._037419.pool.root.1
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas       529 Jan  9 19:31 boinc_task_state.xml
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas      1053 Jan  9 19:31 memory_monitor_summary.json
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas    407957 Jan  9 19:31 log.47898826._037419.job.log.tgz.1
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas        95 Jan  9 19:31 pilot_heartbeat.json
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas      7853 Jan  9 19:31 heartbeat.json
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 19:32 boinc_mmap_file
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas        27 Jan  9 19:32 wrapper_checkpoint.txt
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas      4818 Jan  9 19:32 pilotlog.txt
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas    776287 Jan  9 19:32 log.47898826._037419.job.log.1
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas       357 Jan  9 19:32 output.list
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas       620 Jan  9 19:32 runtime_log
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas   1208320 Jan  9 19:32 result.tar.gz
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas      9344 Jan  9 19:32 runtime_log.err
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas       660 Jan  9 19:32 BtZKDmoBJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmt5lKDmYjNsYm.diag
[2026-01-09 19:32:29] -rw-r--r-- 1 boincer umatlas     21996 Jan  9 19:32 stderr.txt
[2026-01-09 19:32:29] HITS file was successfully produced:
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas 215172814 Jan  9 19:30 shared/HITS.pool.root.1
[2026-01-09 19:32:29]  *** Contents of shared directory: ***
[2026-01-09 19:32:29] total 431272
[2026-01-09 19:32:29] -rw-r--r-- 2 boincer umatlas 224620357 Jan  9 18:00 ATLAS.root_0
[2026-01-09 19:32:29] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 18:00 start_atlas.sh
[2026-01-09 19:32:29] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 18:00 input.tar.gz
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas 215172814 Jan  9 19:30 HITS.pool.root.1
[2026-01-09 19:32:29] -rw------- 1 boincer umatlas   1208320 Jan  9 19:32 result.tar.gz
19:32:30 (21171): run_atlas exited; CPU time 59995.664593
19:32:30 (21171): called boinc_finish(0)

</stderr_txt>
]]>

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