Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:09:38 (84783): wrapper (7.7.26015): starting
18:09:38 (84783): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 18:09:38] Arguments: --nthreads 12
[2026-01-09 18:09:38] Threads: 12
[2026-01-09 18:09:38] Checking for CVMFS
[2026-01-09 18:09:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:09:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:09:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:09:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:09:38] 2.13.3.0 5699 0 61408 154960 3 250 21710187 40960001 3188 16776704 0 214053 99.992 2844 61826 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 18:09:38] CVMFS is ok
[2026-01-09 18:09:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:09:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:09:38] Further information can be found at the LHC@home message board.
[2026-01-09 18:09:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:09:38] Checking for apptainer binary...
[2026-01-09 18:09:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:09:38] Running /usr/bin/apptainer --version
[2026-01-09 18:09:38] apptainer version 1.4.5-2.el9
[2026-01-09 18:09:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:09:38] c-212-12.aglt2.org
[2026-01-09 18:09:38] apptainer works
[2026-01-09 18:09:38] Set ATHENA_PROC_NUMBER=12
[2026-01-09 18:09:38] Set ATHENA_CORE_NUMBER=12
[2026-01-09 18:09:38] Starting ATLAS job with PandaID=6962922918
[2026-01-09 18:09:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:20:09 (84783): BOINC client no longer exists - exiting
18:20:09 (84783): timer handler: client dead, exiting
18:27:08 (158583): wrapper (7.7.26015): starting
18:27:08 (158583): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 18:27:08] Arguments: --nthreads 12
[2026-01-09 18:27:08] Threads: 12
[2026-01-09 18:27:08] This job has been restarted, cleaning up previous attempt
[2026-01-09 18:27:08] Checking for CVMFS
[2026-01-09 18:27:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:27:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:27:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:27:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:27:08] 2.13.3.0 5699 18 57012 154961 1 51 21734581 40960001 0 16776704 0 402590 99.996 4182 59742 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 18:27:08] CVMFS is ok
[2026-01-09 18:27:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:27:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:27:08] Further information can be found at the LHC@home message board.
[2026-01-09 18:27:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:27:08] Checking for apptainer binary...
[2026-01-09 18:27:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:27:08] Running /usr/bin/apptainer --version
[2026-01-09 18:27:08] apptainer version 1.4.5-2.el9
[2026-01-09 18:27:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:27:08] c-212-12.aglt2.org
[2026-01-09 18:27:08] apptainer works
[2026-01-09 18:27:08] Set ATHENA_PROC_NUMBER=12
[2026-01-09 18:27:08] Set ATHENA_CORE_NUMBER=12
[2026-01-09 18:27:08] Starting ATLAS job with PandaID=6962922918
[2026-01-09 18:27:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:39:42]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:39:42] 2026-01-10 02:38:39,088 | INFO     | executing command: lscpu
[2026-01-09 21:39:42] 2026-01-10 02:38:39,106 | INFO     | time since job start (11483s) is within the limit (174528.0s)
[2026-01-09 21:39:42] 2026-01-10 02:38:39,150 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 21:39:42] 2026-01-10 02:38:40,547 | INFO     | monitor loop #765: job 0:6962922918 is in state 'finished'
[2026-01-09 21:39:42] 2026-01-10 02:38:40,547 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:39:42] 2026-01-10 02:38:41,122 | INFO     | time since job start (11485s) is within the limit (174528.0s)
[2026-01-09 21:39:42] 2026-01-10 02:38:43,051 | INFO     | monitor loop #766: job 0:6962922918 is in state 'finished'
[2026-01-09 21:39:42] 2026-01-10 02:38:43,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:39:42] 2026-01-10 02:38:43,130 | INFO     | time since job start (11487s) is within the limit (174528.0s)
[2026-01-09 21:39:42] 2026-01-10 02:38:43,999 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 21:39:42] 2026-01-10 02:38:44,004 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3051.6250937499995
[2026-01-09 21:39:42] 2026-01-10 02:38:44,018 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6962922918/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 21:39:42] 2026-01-10 02:38:44,019 | INFO     | extracted standard info from prmon json
[2026-01-09 21:39:42] 2026-01-10 02:38:44,019 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 21:39:42] 2026-01-10 02:38:44,019 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 21:39:42] 2026-01-10 02:38:44,019 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 21:39:42] 2026-01-10 02:38:44,019 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 21:39:42] 2026-01-10 02:38:44,022 | INFO     | fitting pss+swap vs Time
[2026-01-09 21:39:42] 2026-01-10 02:38:44,022 | INFO     | sum of square deviations: 2059888901.8031929
[2026-01-09 21:39:42] 2026-01-10 02:38:44,023 | INFO     | sum of deviations: 21446381348.723392
[2026-01-09 21:39:42] 2026-01-10 02:38:44,023 | INFO     | mean x: 1768006963.0797873
[2026-01-09 21:39:42] 2026-01-10 02:38:44,024 | INFO     | mean y: 2692125.085106383
[2026-01-09 21:39:42] 2026-01-10 02:38:44,024 | INFO     | intersect: -18404781949.95613
[2026-01-09 21:39:42] 2026-01-10 02:38:44,024 | INFO     | chi2: 1.1587407200158204
[2026-01-09 21:39:42] 2026-01-10 02:38:44,024 | INFO     | sum of square deviations: 1899863330.076498
[2026-01-09 21:39:42] 2026-01-10 02:38:44,025 | INFO     | sum of deviations: 19789172668.672134
[2026-01-09 21:39:42] 2026-01-10 02:38:44,025 | INFO     | mean x: 1768006810.5956285
[2026-01-09 21:39:42] 2026-01-10 02:38:44,025 | INFO     | mean y: 2690546.5901639345
[2026-01-09 21:39:42] 2026-01-10 02:38:44,025 | INFO     | intersect: -18413050996.70097
[2026-01-09 21:39:42] 2026-01-10 02:38:44,025 | INFO     | chi2: 1.1587501933758348
[2026-01-09 21:39:42] 2026-01-10 02:38:44,026 | INFO     | current chi2=1.1587501933758348 (change=-0.0008175564948054491 %)
[2026-01-09 21:39:42] 2026-01-10 02:38:44,026 | INFO     | right removable region: 182
[2026-01-09 21:39:42] 2026-01-10 02:38:44,026 | INFO     | sum of square deviations: 1899796840.076498
[2026-01-09 21:39:42] 2026-01-10 02:38:44,027 | INFO     | sum of deviations: -1666223579.7978165
[2026-01-09 21:39:42] 2026-01-10 02:38:44,027 | INFO     | mean x: 1768007115.5956285
[2026-01-09 21:39:42] 2026-01-10 02:38:44,027 | INFO     | mean y: 2713794.5027322406
[2026-01-09 21:39:42] 2026-01-10 02:38:44,027 | INFO     | intersect: 1553350727.416643
[2026-01-09 21:39:42] 2026-01-10 02:38:44,027 | INFO     | chi2: 0.01743844296416673
[2026-01-09 21:39:42] 2026-01-10 02:38:44,027 | INFO     | current chi2=0.01743844296416673 (change=98.49505220081257 %)
[2026-01-09 21:39:42] 2026-01-10 02:38:44,027 | INFO     | sum of square deviations: 1748216565.752807
[2026-01-09 21:39:42] 2026-01-10 02:38:44,028 | INFO     | sum of deviations: -1518957368.101123
[2026-01-09 21:39:42] 2026-01-10 02:38:44,028 | INFO     | mean x: 1768007268.1123595
[2026-01-09 21:39:42] 2026-01-10 02:38:44,029 | INFO     | mean y: 2713642.45505618
[2026-01-09 21:39:42] 2026-01-10 02:38:44,029 | INFO     | intersect: 1538866381.9751625
[2026-01-09 21:39:42] 2026-01-10 02:38:44,029 | INFO     | chi2: 0.01737970617464752
[2026-01-09 21:39:42] 2026-01-10 02:38:44,029 | INFO     | current chi2=0.01737970617464752 (change=0.33682358935316375 %)
[2026-01-09 21:39:42] 2026-01-10 02:38:44,029 | INFO     | left removable region: 20
[2026-01-09 21:39:42] 2026-01-10 02:38:44,029 | INFO     | sum of square deviations: 1317729799.160496
[2026-01-09 21:39:42] 2026-01-10 02:38:44,030 | INFO     | sum of deviations: -699615165.358022
[2026-01-09 21:39:42] 2026-01-10 02:38:44,030 | INFO     | mean x: 1768007390.1728394
[2026-01-09 21:39:42] 2026-01-10 02:38:44,030 | INFO     | mean y: 2710143.6913580247
[2026-01-09 21:39:42] 2026-01-10 02:38:44,030 | INFO     | intersect: 941388758.5469985
[2026-01-09 21:39:42] 2026-01-10 02:38:44,030 | INFO     | chi2: 0.014520794703313465
[2026-01-09 21:39:42] 2026-01-10 02:38:44,030 | INFO     | current memory leak: -0.53 B/s (using 162 data points, chi2=0.01)
[2026-01-09 21:39:42] 2026-01-10 02:38:44,031 | INFO     | could have reported an average CPU frequency of 3207 MHz (10 samples)
[2026-01-09 21:39:42] 2026-01-10 02:38:44,031 | INFO     | ..............................
[2026-01-09 21:39:42] 2026-01-10 02:38:44,031 | INFO     | . Timing measurements:
[2026-01-09 21:39:42] 2026-01-10 02:38:44,031 | INFO     | . get job = 0 s
[2026-01-09 21:39:42] 2026-01-10 02:38:44,031 | INFO     | . initial setup = 0 s
[2026-01-09 21:39:42] 2026-01-10 02:38:44,031 | INFO     | . payload setup = 4 s
[2026-01-09 21:39:42] 2026-01-10 02:38:44,031 | INFO     | . stage-in = 0 s
[2026-01-09 21:39:42] 2026-01-10 02:38:44,031 | INFO     | . payload execution = 11455 s
[2026-01-09 21:39:42] 2026-01-10 02:38:44,032 | INFO     | . stage-out = 1 s
[2026-01-09 21:39:42] 2026-01-10 02:38:44,032 | INFO     | . log creation = 0 s
[2026-01-09 21:39:42] 2026-01-10 02:38:44,032 | INFO     | ..............................
[2026-01-09 21:39:42] 2026-01-10 02:38:44,112 | INFO     | 
[2026-01-09 21:39:42] 2026-01-10 02:38:44,114 | INFO     | job summary report
[2026-01-09 21:39:42] 2026-01-10 02:38:44,114 | INFO     | --------------------------------------------------
[2026-01-09 21:39:42] 2026-01-10 02:38:44,114 | INFO     | PanDA job id: 6962922918
[2026-01-09 21:39:42] 2026-01-10 02:38:44,114 | INFO     | task id: 47898826
[2026-01-09 21:39:42] 2026-01-10 02:38:44,114 | INFO     | errors: (none)
[2026-01-09 21:39:42] 2026-01-10 02:38:44,114 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 21:39:42] 2026-01-10 02:38:44,114 | INFO     | pilot state: finished 
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | transexitcode: 0
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | exeerrorcode: 0
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | exeerrordiag: 
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | exitcode: 0
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | exitmsg: OK
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | cpuconsumptiontime: 44585 s
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | nevents: 400
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | neventsw: 0
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | pid: 239799
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | pgrp: 239799
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | corecount: 12
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | event service: False
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | sizes: {0: 2283966, 3: 2284228, 11: 2284256, 11463: 2313798, 11466: 2322796, 11467: 2322852, 11473: 2323174}
[2026-01-09 21:39:42] 2026-01-10 02:38:44,115 | INFO     | --------------------------------------------------
[2026-01-09 21:39:42] 2026-01-10 02:38:44,116 | INFO     | 
[2026-01-09 21:39:42] 2026-01-10 02:38:44,116 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2026-01-09 21:39:42] 2026-01-10 02:38:44,160 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,161 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,162 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,162 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,162 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,162 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:39:42] 2026-01-10 02:38:44,162 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,162 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:39:42] 2026-01-10 02:38:44,162 | INFO     | job 6962922918 has completed (purged errors)
[2026-01-09 21:39:42] 2026-01-10 02:38:44,162 | INFO     | overall cleanup function is called
[2026-01-09 21:39:42] 2026-01-10 02:38:45,172 | INFO     | --- collectZombieJob: --- 10, [239799]
[2026-01-09 21:39:42] 2026-01-10 02:38:45,172 | INFO     | zombie collector waiting for pid 239799
[2026-01-09 21:39:42] 2026-01-10 02:38:45,172 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:39:42] 2026-01-10 02:38:45,172 | INFO     | collected zombie processes
[2026-01-09 21:39:42] 2026-01-10 02:38:45,172 | INFO     | will attempt to kill all subprocesses of pid=239799
[2026-01-09 21:39:42] 2026-01-10 02:38:45,513 | INFO     | process IDs to be killed: [239799] (in reverse order)
[2026-01-09 21:39:42] 2026-01-10 02:38:45,632 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:39:42] 2026-01-10 02:38:45,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:39:42] 2026-01-10 02:38:45,646 | INFO     | did not find any defunct processes belonging to 239799
[2026-01-09 21:39:42] 2026-01-10 02:38:45,660 | INFO     | did not find any defunct processes belonging to 239799
[2026-01-09 21:39:42] 2026-01-10 02:38:45,661 | INFO     | ready for new job
[2026-01-09 21:39:42] 2026-01-10 02:38:45,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:39:42] 2026-01-10 02:38:45,663 | INFO     | ***************************************
[2026-01-09 21:39:42] 2026-01-10 02:38:45,663 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:39:42] 2026-01-10 02:38:45,663 | INFO     | ***************************************
[2026-01-09 21:39:42] 2026-01-10 02:38:45,664 | INFO     | 
[2026-01-09 21:39:42] 2026-01-10 02:38:45,668 | INFO     | architecture information:
[2026-01-09 21:39:42] 2026-01-10 02:38:45,669 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:39:42] 2026-01-10 02:38:45,683 | INFO     | cat /etc/os-release:
[2026-01-09 21:39:42] NAME="CentOS Linux"
[2026-01-09 21:39:42] VERSION="7 (Core)"
[2026-01-09 21:39:42] ID="centos"
[2026-01-09 21:39:42] ID_LIKE="rhel fedora"
[2026-01-09 21:39:42] VERSION_ID="7"
[2026-01-09 21:39:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:39:42] ANSI_COLOR="0;31"
[2026-01-09 21:39:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:39:42] HOME_URL="https://www.centos.org/"
[2026-01-09 21:39:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:39:42] 
[2026-01-09 21:39:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:39:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:39:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:39:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:39:42] 
[2026-01-09 21:39:42] 2026-01-10 02:38:45,684 | INFO     | ***************************************
[2026-01-09 21:39:42] 2026-01-10 02:38:46,191 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2026-01-09 21:39:42] 2026-01-10 02:38:46,214 | INFO     | sufficient remaining disk space (127958777856 B)
[2026-01-09 21:39:42] 2026-01-10 02:38:46,214 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:39:42] 2026-01-10 02:38:46,214 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:39:42] 2026-01-10 02:38:46,214 | INFO     | update_server=False
[2026-01-09 21:39:42] 2026-01-10 02:38:46,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:39:42] 2026-01-10 02:38:46,219 | INFO     | all payload control threads have been joined
[2026-01-09 21:39:42] 2026-01-10 02:38:46,289 | INFO     | all job control threads have been joined
[2026-01-09 21:39:42] 2026-01-10 02:38:46,569 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:39:42] 2026-01-10 02:38:46,569 | INFO     | aborting loop
[2026-01-09 21:39:42] 2026-01-10 02:38:46,733 | INFO     | all data control threads have been joined
[2026-01-09 21:39:42] 2026-01-10 02:38:47,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:39:42] 2026-01-10 02:38:47,220 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:47,224 | INFO     | [payload] control thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:47,295 | INFO     | [job] control thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:47,574 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:47,581 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:47,740 | INFO     | [data] control thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:47,824 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:47,909 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:48,060 | INFO     | [job] validate thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:48,164 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:48,389 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:48,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:39:42] 2026-01-10 02:38:48,491 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:48,631 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:49,123 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:39:42] 2026-01-10 02:38:49,161 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:50,128 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:38:52,475 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:39:42] 2026-01-10 02:39:16,570 | INFO     | PID=188953 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 21:39:42] 2026-01-10 02:39:16,572 | INFO     | .. there are 15 such processes running
[2026-01-09 21:39:42] 2026-01-10 02:39:16,573 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:39:42] 2026-01-10 02:39:16,573 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:39:42] 2026-01-10 02:39:16,573 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:39:42] 2026-01-10 02:39:35,638 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:39:42] 2026-01-10 02:39:36,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140222458570560)>', '<ExcThread(monitor, started 140222109030144)>']
[2026-01-09 21:39:42] 2026-01-10 02:39:37,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:39:42] 2026-01-10 02:39:37,687 | INFO     | [monitor] control thread has ended
[2026-01-09 21:39:42] 2026-01-10 02:39:41,907 | INFO     | all workflow threads have been joined
[2026-01-09 21:39:42] 2026-01-10 02:39:41,907 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:39:42] 2026-01-10 02:39:41,907 | INFO     | traces error code: 0
[2026-01-09 21:39:42] 2026-01-10 02:39:41,907 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:39:42] 2026-01-10 02:39:42,033 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:39:42] 2026-01-10 02:39:42,037 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:39:42] 2026-01-10 02:39:42,039 [wrapper] pilotpid: 188953
[2026-01-09 21:39:42] 2026-01-10 02:39:42,042 [wrapper] Pilot exit status: 0
[2026-01-09 21:39:42] 2026-01-10 02:39:42,066 [wrapper] pandaids: 6962922918 6962922918
[2026-01-09 21:39:42] 2026-01-10 02:39:42,153 [wrapper] cleanup supervisor_pilot  800220 188958
[2026-01-09 21:39:42] 2026-01-10 02:39:42,156 [wrapper] Test setup, not cleaning
[2026-01-09 21:39:42] 2026-01-10 02:39:42,159 [wrapper] apfmon messages muted
[2026-01-09 21:39:42] 2026-01-10 02:39:42,162 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:39:42] 2026-01-10 02:39:42,164 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:39:42]  *** Error codes and diagnostics ***
[2026-01-09 21:39:42]     "exeErrorCode": 0,
[2026-01-09 21:39:42]     "exeErrorDiag": "",
[2026-01-09 21:39:42]     "pilotErrorCode": 0,
[2026-01-09 21:39:42]     "pilotErrorDiag": "",
[2026-01-09 21:39:42]  *** Listing of results directory ***
[2026-01-09 21:39:42] total 668384
[2026-01-09 21:39:42] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 21:39:42] -rwx------. 1 boincer umatlas     36322 Jan  8 03:17 runpilot2-wrapper.sh
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:23 pilot3.tar.gz
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:27 queuedata.json
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas       100 Jan  9 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:39:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 18:09 run_atlas
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas       105 Jan  9 18:09 job.xml
[2026-01-09 21:39:42] -rw-r--r--. 3 boincer umatlas 227468891 Jan  9 18:09 EVNT.47898824._000859.pool.root.1
[2026-01-09 21:39:42] -rw-r--r--. 3 boincer umatlas 227468891 Jan  9 18:09 ATLAS.root_0
[2026-01-09 21:39:42] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 18:09 input.tar.gz
[2026-01-09 21:39:42] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 18:09 start_atlas.sh
[2026-01-09 21:39:42] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 18:09 shared
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas         0 Jan  9 18:09 boinc_lockfile
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas      2517 Jan  9 18:27 pandaJob.out
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas        57 Jan  9 18:27 setup.sh.local
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas    989374 Jan  9 18:27 agis_schedconf.cvmfs.json
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas      6956 Jan  9 21:36 init_data.xml
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas 221524999 Jan  9 21:38 HITS.47898826._022278.pool.root.1
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas       530 Jan  9 21:38 boinc_task_state.xml
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas      1041 Jan  9 21:38 memory_monitor_summary.json
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas   1516240 Jan  9 21:38 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas    464843 Jan  9 21:38 log.47898826._022278.job.log.tgz.1
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas      7790 Jan  9 21:38 heartbeat.json
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas        96 Jan  9 21:38 pilot_heartbeat.json
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 21:39 boinc_mmap_file
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas        27 Jan  9 21:39 wrapper_checkpoint.txt
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas      4824 Jan  9 21:39 pilotlog.txt
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas   1551903 Jan  9 21:39 log.47898826._022278.job.log.1
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas       357 Jan  9 21:39 output.list
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas       620 Jan  9 21:39 runtime_log
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas   2037760 Jan  9 21:39 result.tar.gz
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas      9430 Jan  9 21:39 runtime_log.err
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas       785 Jan  9 21:39 PxtNDmCO0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmA0jKDmLjHRim.diag
[2026-01-09 21:39:42] -rw-r--r--. 1 boincer umatlas     23706 Jan  9 21:39 stderr.txt
[2026-01-09 21:39:42] HITS file was successfully produced:
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas 221524999 Jan  9 21:38 shared/HITS.pool.root.1
[2026-01-09 21:39:42]  *** Contents of shared directory: ***
[2026-01-09 21:39:42] total 441072
[2026-01-09 21:39:42] -rw-r--r--. 3 boincer umatlas 227468891 Jan  9 18:09 ATLAS.root_0
[2026-01-09 21:39:42] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 18:09 input.tar.gz
[2026-01-09 21:39:42] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 18:09 start_atlas.sh
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas 221524999 Jan  9 21:38 HITS.pool.root.1
[2026-01-09 21:39:42] -rw-------. 1 boincer umatlas   2037760 Jan  9 21:39 result.tar.gz
21:39:43 (158583): run_atlas exited; CPU time 45041.152365
21:39:43 (158583): called boinc_finish(0)

</stderr_txt>
]]>

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