Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:29:15 (21533): wrapper (7.7.26015): starting
05:29:15 (21533): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 05:29:15] Arguments: --nthreads 8
[2026-01-10 05:29:15] Threads: 8
[2026-01-10 05:29:15] Checking for CVMFS
[2026-01-10 05:29:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 05:29:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 05:29:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 05:29:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 05:29:19] 2.11.2.0 15043 36359 120976 154968 0 60 16926464 25165824 899 130560 0 17507811 99.843 10757235 3379 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 05:29:19] CVMFS is ok
[2026-01-10 05:29:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 05:29:19] Checking for apptainer binary...
[2026-01-10 05:29:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 05:29:19] Running /usr/bin/apptainer --version
[2026-01-10 05:29:19] apptainer version 1.3.2-1.el7
[2026-01-10 05:29:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 05:29:39] cg-vwn492.simple-grid.lan
[2026-01-10 05:29:39] apptainer works
[2026-01-10 05:29:39] Set ATHENA_PROC_NUMBER=8
[2026-01-10 05:29:39] Set ATHENA_CORE_NUMBER=8
[2026-01-10 05:29:39] Starting ATLAS job with PandaID=6963165612
[2026-01-10 05:29:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 11:14:37]  *** The last 200 lines of the pilot log: ***
[2026-01-10 11:14:37] 2026-01-10 10:13:48,202 | INFO     | time since job start (20398s) is within the limit (349056.0s)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,081 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 11:14:37] 2026-01-10 10:13:49,082 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-10 11:14:37] 2026-01-10 10:13:49,084 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6963165612/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,085 | INFO     | extracted standard info from prmon json
[2026-01-10 11:14:37] 2026-01-10 10:13:49,085 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 11:14:37] 2026-01-10 10:13:49,085 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 11:14:37] 2026-01-10 10:13:49,086 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 11:14:37] 2026-01-10 10:13:49,086 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 11:14:37] 2026-01-10 10:13:49,093 | INFO     | fitting pss+swap vs Time
[2026-01-10 11:14:37] 2026-01-10 10:13:49,093 | INFO     | sum of square deviations: 10546523325.0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,097 | INFO     | sum of deviations: 137207382715.99998
[2026-01-10 11:14:37] 2026-01-10 10:13:49,097 | INFO     | mean x: 1768030044.5
[2026-01-10 11:14:37] 2026-01-10 10:13:49,098 | INFO     | mean y: 2436597.796296296
[2026-01-10 11:14:37] 2026-01-10 10:13:49,098 | INFO     | intersect: -22999150512.342484
[2026-01-10 11:14:37] 2026-01-10 10:13:49,098 | INFO     | chi2: 9.070257353147381
[2026-01-10 11:14:37] 2026-01-10 10:13:49,099 | INFO     | sum of square deviations: 10065751520.0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,103 | INFO     | sum of deviations: 178782838932.0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,103 | INFO     | mean x: 1768029892.0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,103 | INFO     | mean y: 2449655.2695924765
[2026-01-10 11:14:37] 2026-01-10 10:13:49,103 | INFO     | intersect: -31400412096.318462
[2026-01-10 11:14:37] 2026-01-10 10:13:49,104 | INFO     | chi2: 7.5300068547296215
[2026-01-10 11:14:37] 2026-01-10 10:13:49,104 | INFO     | current chi2=7.5300068547296215 (change=16.981331823879202 %)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,104 | INFO     | right removable region: 318
[2026-01-10 11:14:37] 2026-01-10 10:13:49,104 | INFO     | sum of square deviations: 10065751520.0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,108 | INFO     | sum of deviations: 25370578136.999996
[2026-01-10 11:14:37] 2026-01-10 10:13:49,108 | INFO     | mean x: 1768030197.0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,108 | INFO     | mean y: 2472054.3448275863
[2026-01-10 11:14:37] 2026-01-10 10:13:49,108 | INFO     | intersect: -4453821961.302004
[2026-01-10 11:14:37] 2026-01-10 10:13:49,109 | INFO     | chi2: 4.313693545437572
[2026-01-10 11:14:37] 2026-01-10 10:13:49,109 | INFO     | current chi2=4.313693545437572 (change=52.44133239570408 %)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,110 | INFO     | sum of square deviations: 9599817202.5
[2026-01-10 11:14:37] 2026-01-10 10:13:49,113 | INFO     | sum of deviations: -55847809368.49999
[2026-01-10 11:14:37] 2026-01-10 10:13:49,113 | INFO     | mean x: 1768030349.5
[2026-01-10 11:14:37] 2026-01-10 10:13:49,114 | INFO     | mean y: 2498599.5445859875
[2026-01-10 11:14:37] 2026-01-10 10:13:49,114 | INFO     | intersect: 10288175902.950344
[2026-01-10 11:14:37] 2026-01-10 10:13:49,114 | INFO     | chi2: 1.8999695262454053
[2026-01-10 11:14:37] 2026-01-10 10:13:49,114 | INFO     | current chi2=1.8999695262454053 (change=55.95492572125506 %)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,115 | INFO     | sum of square deviations: 9148487810.0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,118 | INFO     | sum of deviations: -66015575733.000015
[2026-01-10 11:14:37] 2026-01-10 10:13:49,119 | INFO     | mean x: 1768030502.0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,119 | INFO     | mean y: 2502013.012944984
[2026-01-10 11:14:37] 2026-01-10 10:13:49,119 | INFO     | intersect: 12760627063.521706
[2026-01-10 11:14:37] 2026-01-10 10:13:49,119 | INFO     | chi2: 1.8287709128807297
[2026-01-10 11:14:37] 2026-01-10 10:13:49,120 | INFO     | current chi2=1.8287709128807297 (change=3.747355543400404 %)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,120 | INFO     | left removable region: 30
[2026-01-10 11:14:37] 2026-01-10 10:13:49,120 | INFO     | sum of square deviations: 7407141672.0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,123 | INFO     | sum of deviations: 6297255242.499997
[2026-01-10 11:14:37] 2026-01-10 10:13:49,123 | INFO     | mean x: 1768030776.5
[2026-01-10 11:14:37] 2026-01-10 10:13:49,123 | INFO     | mean y: 2505658.670138889
[2026-01-10 11:14:37] 2026-01-10 10:13:49,124 | INFO     | intersect: -1500603309.5710137
[2026-01-10 11:14:37] 2026-01-10 10:13:49,124 | INFO     | chi2: 0.048841221956023105
[2026-01-10 11:14:37] 2026-01-10 10:13:49,124 | INFO     | current memory leak: 0.85 B/s (using 288 data points, chi2=0.05)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,125 | INFO     | could have reported an average CPU frequency of 2249 MHz (14 samples)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,125 | INFO     | ..............................
[2026-01-10 11:14:37] 2026-01-10 10:13:49,125 | INFO     | . Timing measurements:
[2026-01-10 11:14:37] 2026-01-10 10:13:49,125 | INFO     | . get job = 0 s
[2026-01-10 11:14:37] 2026-01-10 10:13:49,125 | INFO     | . initial setup = 10 s
[2026-01-10 11:14:37] 2026-01-10 10:13:49,126 | INFO     | . payload setup = 162 s
[2026-01-10 11:14:37] 2026-01-10 10:13:49,126 | INFO     | . stage-in = 0 s
[2026-01-10 11:14:37] 2026-01-10 10:13:49,126 | INFO     | . payload execution = 19904 s
[2026-01-10 11:14:37] 2026-01-10 10:13:49,126 | INFO     | . stage-out = 4 s
[2026-01-10 11:14:37] 2026-01-10 10:13:49,126 | INFO     | . log creation = 1 s
[2026-01-10 11:14:37] 2026-01-10 10:13:49,126 | INFO     | ..............................
[2026-01-10 11:14:37] 2026-01-10 10:13:49,258 | INFO     | 
[2026-01-10 11:14:37] 2026-01-10 10:13:49,258 | INFO     | job summary report
[2026-01-10 11:14:37] 2026-01-10 10:13:49,258 | INFO     | --------------------------------------------------
[2026-01-10 11:14:37] 2026-01-10 10:13:49,258 | INFO     | PanDA job id: 6963165612
[2026-01-10 11:14:37] 2026-01-10 10:13:49,259 | INFO     | task id: 47898826
[2026-01-10 11:14:37] 2026-01-10 10:13:49,259 | INFO     | errors: (none)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,259 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 11:14:37] 2026-01-10 10:13:49,259 | INFO     | pilot state: finished 
[2026-01-10 11:14:37] 2026-01-10 10:13:49,259 | INFO     | transexitcode: 0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,259 | INFO     | exeerrorcode: 0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,259 | INFO     | exeerrordiag: 
[2026-01-10 11:14:37] 2026-01-10 10:13:49,259 | INFO     | exitcode: 0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,259 | INFO     | exitmsg: OK
[2026-01-10 11:14:37] 2026-01-10 10:13:49,260 | INFO     | cpuconsumptiontime: 74656 s
[2026-01-10 11:14:37] 2026-01-10 10:13:49,260 | INFO     | nevents: 400
[2026-01-10 11:14:37] 2026-01-10 10:13:49,260 | INFO     | neventsw: 0
[2026-01-10 11:14:37] 2026-01-10 10:13:49,260 | INFO     | pid: 31758
[2026-01-10 11:14:37] 2026-01-10 10:13:49,260 | INFO     | pgrp: 31758
[2026-01-10 11:14:37] 2026-01-10 10:13:49,260 | INFO     | corecount: 8
[2026-01-10 11:14:37] 2026-01-10 10:13:49,260 | INFO     | event service: False
[2026-01-10 11:14:37] 2026-01-10 10:13:49,260 | INFO     | sizes: {0: 2283143, 1: 2283829, 2: 2284028, 13: 2284028, 24: 2284084, 34: 2284112, 45: 2284268, 56: 2284296, 67: 2284324, 77: 2284352, 88: 2284408, 99: 2284716, 10
[2026-01-10 11:14:37] 2026-01-10 10:13:49,260 | INFO     | --------------------------------------------------
[2026-01-10 11:14:37] 2026-01-10 10:13:49,260 | INFO     | 
[2026-01-10 11:14:37] 2026-01-10 10:13:49,261 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2026-01-10 11:14:37] 2026-01-10 10:13:49,901 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,901 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,901 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,901 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,901 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,901 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,902 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,902 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,902 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,902 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,902 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,902 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,902 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,902 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,902 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,903 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,903 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,903 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,903 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,903 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 11:14:37] 2026-01-10 10:13:49,903 | INFO     | job 6963165612 has completed (purged errors)
[2026-01-10 11:14:37] 2026-01-10 10:13:49,903 | INFO     | overall cleanup function is called
[2026-01-10 11:14:37] 2026-01-10 10:13:50,915 | INFO     | --- collectZombieJob: --- 10, [31758]
[2026-01-10 11:14:37] 2026-01-10 10:13:50,915 | INFO     | zombie collector waiting for pid 31758
[2026-01-10 11:14:37] 2026-01-10 10:13:50,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 11:14:37] 2026-01-10 10:13:50,916 | INFO     | collected zombie processes
[2026-01-10 11:14:37] 2026-01-10 10:13:50,916 | INFO     | will attempt to kill all subprocesses of pid=31758
[2026-01-10 11:14:37] 2026-01-10 10:13:51,020 | INFO     | process IDs to be killed: [31758] (in reverse order)
[2026-01-10 11:14:37] 2026-01-10 10:13:51,896 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 11:14:37] 2026-01-10 10:13:51,896 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 11:14:37] 2026-01-10 10:13:51,898 | INFO     | did not find any defunct processes belonging to 31758
[2026-01-10 11:14:37] 2026-01-10 10:13:51,899 | INFO     | did not find any defunct processes belonging to 31758
[2026-01-10 11:14:37] 2026-01-10 10:13:51,899 | INFO     | ready for new job
[2026-01-10 11:14:37] 2026-01-10 10:13:51,900 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 11:14:37] 2026-01-10 10:13:51,902 | INFO     | ***************************************
[2026-01-10 11:14:37] 2026-01-10 10:13:51,902 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 11:14:37] 2026-01-10 10:13:51,902 | INFO     | ***************************************
[2026-01-10 11:14:37] 2026-01-10 10:13:51,902 | INFO     | 
[2026-01-10 11:14:37] 2026-01-10 10:13:51,902 | INFO     | pilot is running in a VM
[2026-01-10 11:14:37] 2026-01-10 10:13:51,903 | INFO     | architecture information:
[2026-01-10 11:14:37] 2026-01-10 10:13:51,910 | INFO     | executing command: cat /etc/os-release
[2026-01-10 11:14:37] 2026-01-10 10:13:52,158 | INFO     | cat /etc/os-release:
[2026-01-10 11:14:37] NAME="CentOS Linux"
[2026-01-10 11:14:37] VERSION="7 (Core)"
[2026-01-10 11:14:37] ID="centos"
[2026-01-10 11:14:37] ID_LIKE="rhel fedora"
[2026-01-10 11:14:37] VERSION_ID="7"
[2026-01-10 11:14:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 11:14:37] ANSI_COLOR="0;31"
[2026-01-10 11:14:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 11:14:37] HOME_URL="https://www.centos.org/"
[2026-01-10 11:14:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 11:14:37] 
[2026-01-10 11:14:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 11:14:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 11:14:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 11:14:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 11:14:37] 
[2026-01-10 11:14:37] 2026-01-10 10:13:52,158 | INFO     | ***************************************
[2026-01-10 11:14:37] 2026-01-10 10:13:52,661 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2026-01-10 11:14:37] 2026-01-10 10:13:52,938 | INFO     | sufficient remaining disk space (497296605184 B)
[2026-01-10 11:14:37] 2026-01-10 10:13:52,938 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 11:14:37] 2026-01-10 10:13:52,938 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 11:14:37] 2026-01-10 10:13:52,939 | INFO     | update_server=False
[2026-01-10 11:14:37] 2026-01-10 10:13:52,939 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 11:14:37] 2026-01-10 10:13:52,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 11:14:37] 2026-01-10 10:13:52,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:14:37] 2026-01-10 10:13:52,948 | INFO     | aborting loop
[2026-01-10 11:14:37] 2026-01-10 10:13:53,308 | INFO     | all data control threads have been joined
[2026-01-10 11:14:37] 2026-01-10 10:13:53,537 | INFO     | all job control threads have been joined
[2026-01-10 11:14:37] 2026-01-10 10:13:53,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 11:14:37] 2026-01-10 10:13:53,925 | INFO     | all payload control threads have been joined
[2026-01-10 11:14:37] 2026-01-10 10:13:53,944 | INFO     | [job] retrieve thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:53,949 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:53,954 | INFO     | [job] job monitor thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:54,272 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:14:37] 2026-01-10 10:13:54,314 | INFO     | [data] control thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:54,543 | INFO     | [job] control thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:54,622 | INFO     | [data] copytool_in thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:54,674 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:54,846 | INFO     | [payload] validate_post thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:54,931 | INFO     | [payload] control thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:54,946 | INFO     | [data] copytool_out thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:55,205 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:55,229 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:55,278 | INFO     | [job] queue monitor thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:55,385 | INFO     | [job] validate thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:55,399 | INFO     | [payload] failed_post thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:13:57,786 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 11:14:37] 2026-01-10 10:14:22,143 | INFO     | PID=25276 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 11:14:37] 2026-01-10 10:14:22,143 | INFO     | .. there are 2 such processes running
[2026-01-10 11:14:37] 2026-01-10 10:14:22,143 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 11:14:37] 2026-01-10 10:14:22,143 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 11:14:37] 2026-01-10 10:14:22,143 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 11:14:37] 2026-01-10 10:14:25,428 | INFO     | [monitor] cgroup control has ended
[2026-01-10 11:14:37] 2026-01-10 10:14:26,871 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066126395200)>', '<ExcThread(monitor, started 140065317578496)>']
[2026-01-10 11:14:37] 2026-01-10 10:14:27,173 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 11:14:37] 2026-01-10 10:14:27,173 | INFO     | [monitor] control thread has ended
[2026-01-10 11:14:37] 2026-01-10 10:14:31,897 | INFO     | all workflow threads have been joined
[2026-01-10 11:14:37] 2026-01-10 10:14:31,897 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 11:14:37] 2026-01-10 10:14:31,898 | INFO     | traces error code: 0
[2026-01-10 11:14:37] 2026-01-10 10:14:31,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 11:14:37] 2026-01-10 10:14:32,467 [wrapper] ==== pilot stdout END ====
[2026-01-10 11:14:37] 2026-01-10 10:14:32,564 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 11:14:37] 2026-01-10 10:14:32,626 [wrapper] pilotpid: 25276
[2026-01-10 11:14:37] 2026-01-10 10:14:32,688 [wrapper] Pilot exit status: 0
[2026-01-10 11:14:37] 2026-01-10 10:14:33,215 [wrapper] pandaids: 6963165612
[2026-01-10 11:14:37] 2026-01-10 10:14:34,278 [wrapper] cleanup supervisor_pilot 29741 25277
[2026-01-10 11:14:37] 2026-01-10 10:14:34,396 [wrapper] Test setup, not cleaning
[2026-01-10 11:14:37] 2026-01-10 10:14:34,544 [wrapper] apfmon messages muted
[2026-01-10 11:14:37] 2026-01-10 10:14:34,625 [wrapper] ==== wrapper stdout END ====
[2026-01-10 11:14:37] 2026-01-10 10:14:34,748 [wrapper] ==== wrapper stderr END ====
[2026-01-10 11:14:37]  *** Error codes and diagnostics ***
[2026-01-10 11:14:37]     "exeErrorCode": 0,
[2026-01-10 11:14:37]     "exeErrorDiag": "",
[2026-01-10 11:14:37]     "pilotErrorCode": 0,
[2026-01-10 11:14:37]     "pilotErrorDiag": "",
[2026-01-10 11:14:37]  *** Listing of results directory ***
[2026-01-10 11:14:37] total 441212
[2026-01-10 11:14:37] -rwx------. 1 boinc boinc     36322 Jan  9 01:56 runpilot2-wrapper.sh
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc       100 Jan 10 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 11:14:37] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 05:29 run_atlas
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc       105 Jan 10 05:29 job.xml
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc      6392 Jan 10 05:29 init_data.xml
[2026-01-10 11:14:37] -rw-r--r--. 2 boinc boinc 222689245 Jan 10 05:29 EVNT.47898824._001349.pool.root.1
[2026-01-10 11:14:37] -rw-r--r--. 2 boinc boinc     15847 Jan 10 05:29 start_atlas.sh
[2026-01-10 11:14:37] drwxrwx--x. 2 boinc boinc        68 Jan 10 05:29 shared
[2026-01-10 11:14:37] -rw-r--r--. 2 boinc boinc    592395 Jan 10 05:29 input.tar.gz
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc         0 Jan 10 05:29 boinc_lockfile
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc      2520 Jan 10 05:29 pandaJob.out
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc    989374 Jan 10 05:33 agis_schedconf.cvmfs.json
[2026-01-10 11:14:37] drwx------. 5 boinc boinc      4096 Jan 10 05:33 pilot3
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc 218721572 Jan 10 11:10 HITS.47898826._034831.pool.root.1
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc       531 Jan 10 11:10 boinc_task_state.xml
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc      1011 Jan 10 11:11 memory_monitor_summary.json
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc   1516240 Jan 10 11:11 agis_ddmendpoints.agis.ALL.json
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc    530201 Jan 10 11:11 log.47898826._034831.job.log.tgz.1
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc        95 Jan 10 11:13 pilot_heartbeat.json
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc      7773 Jan 10 11:13 heartbeat.json
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc      8192 Jan 10 11:14 boinc_mmap_file
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc        28 Jan 10 11:14 wrapper_checkpoint.txt
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc      4885 Jan 10 11:14 pilotlog.txt
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc   2712087 Jan 10 11:14 log.47898826._034831.job.log.1
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc       357 Jan 10 11:14 output.list
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc       620 Jan 10 11:14 runtime_log
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc   3266560 Jan 10 11:14 result.tar.gz
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc      8833 Jan 10 11:14 runtime_log.err
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc       656 Jan 10 11:14 HOIODmCzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnklKDmEkZgUo.diag
[2026-01-10 11:14:37] -rw-r--r--. 1 boinc boinc     20791 Jan 10 11:14 stderr.txt
[2026-01-10 11:14:37] HITS file was successfully produced:
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc 218721572 Jan 10 11:10 shared/HITS.pool.root.1
[2026-01-10 11:14:37]  *** Contents of shared directory: ***
[2026-01-10 11:14:37] total 434856
[2026-01-10 11:14:37] -rw-r--r--. 2 boinc boinc 222689245 Jan 10 05:29 ATLAS.root_0
[2026-01-10 11:14:37] -rw-r--r--. 2 boinc boinc     15847 Jan 10 05:29 start_atlas.sh
[2026-01-10 11:14:37] -rw-r--r--. 2 boinc boinc    592395 Jan 10 05:29 input.tar.gz
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc 218721572 Jan 10 11:10 HITS.pool.root.1
[2026-01-10 11:14:37] -rw-------. 1 boinc boinc   3266560 Jan 10 11:14 result.tar.gz
11:14:39 (21533): run_atlas exited; CPU time 74842.092416
11:14:39 (21533): called boinc_finish(0)

</stderr_txt>
]]>

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