Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:17:35 (13160): wrapper (7.7.26015): starting
06:17:35 (13160): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 06:17:35] Arguments: --nthreads 8
[2026-01-10 06:17:35] Threads: 8
[2026-01-10 06:17:35] Checking for CVMFS
[2026-01-10 06:17:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 06:17:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 06:17:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 06:17:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 06:17:39] 2.11.2.0 14173 36423 125248 154969 2 15 19655252 25165825 899 130560 0 15256942 99.802 9272994 3616 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 06:17:39] CVMFS is ok
[2026-01-10 06:17:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 06:17:39] Checking for apptainer binary...
[2026-01-10 06:17:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 06:17:39] Running /usr/bin/apptainer --version
[2026-01-10 06:17:39] apptainer version 1.3.2-1.el7
[2026-01-10 06:17:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 06:18:20] cg-vwn375.simple-grid.lan
[2026-01-10 06:18:20] apptainer works
[2026-01-10 06:18:20] Set ATHENA_PROC_NUMBER=8
[2026-01-10 06:18:20] Set ATHENA_CORE_NUMBER=8
[2026-01-10 06:18:20] Starting ATLAS job with PandaID=6962318689
[2026-01-10 06:18:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:26:15]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:26:15] 2026-01-10 11:25:23,205 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 12:26:15] 2026-01-10 11:25:23,206 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 12:26:15] 2026-01-10 11:25:23,208 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6962318689/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,209 | INFO     | extracted standard info from prmon json
[2026-01-10 12:26:15] 2026-01-10 11:25:23,209 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:26:15] 2026-01-10 11:25:23,209 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:26:15] 2026-01-10 11:25:23,210 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 12:26:15] 2026-01-10 11:25:23,210 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 12:26:15] 2026-01-10 11:25:23,217 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:26:15] 2026-01-10 11:25:23,218 | INFO     | sum of square deviations: 12955770358.0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,222 | INFO     | sum of deviations: 98625543772.99994
[2026-01-10 12:26:15] 2026-01-10 11:25:23,222 | INFO     | mean x: 1768033636.0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,223 | INFO     | mean y: 2462335.8069164264
[2026-01-10 12:26:15] 2026-01-10 11:25:23,223 | INFO     | intersect: -13456658499.241016
[2026-01-10 12:26:15] 2026-01-10 11:25:23,223 | INFO     | chi2: 6.986625982609446
[2026-01-10 12:26:15] 2026-01-10 11:25:23,224 | INFO     | sum of square deviations: 12403750705.5
[2026-01-10 12:26:15] 2026-01-10 11:25:23,228 | INFO     | sum of deviations: 119701536897.0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,228 | INFO     | mean x: 1768033483.5
[2026-01-10 12:26:15] 2026-01-10 11:25:23,228 | INFO     | mean y: 2468084.7426900584
[2026-01-10 12:26:15] 2026-01-10 11:25:23,228 | INFO     | intersect: -17059816564.88866
[2026-01-10 12:26:15] 2026-01-10 11:25:23,229 | INFO     | chi2: 6.259737538430781
[2026-01-10 12:26:15] 2026-01-10 11:25:23,229 | INFO     | current chi2=6.259737538430781 (change=10.403998238748976 %)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,229 | INFO     | right removable region: 341
[2026-01-10 12:26:15] 2026-01-10 11:25:23,230 | INFO     | sum of square deviations: 12403750705.5
[2026-01-10 12:26:15] 2026-01-10 11:25:23,234 | INFO     | sum of deviations: -19013609354.0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,234 | INFO     | mean x: 1768033788.5
[2026-01-10 12:26:15] 2026-01-10 11:25:23,234 | INFO     | mean y: 2494814.5380116957
[2026-01-10 12:26:15] 2026-01-10 11:25:23,234 | INFO     | intersect: 2712699540.2993517
[2026-01-10 12:26:15] 2026-01-10 11:25:23,235 | INFO     | chi2: 2.534663195941339
[2026-01-10 12:26:15] 2026-01-10 11:25:23,235 | INFO     | current chi2=2.534663195941339 (change=63.7212124672135 %)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,236 | INFO     | sum of square deviations: 11867638328.0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,240 | INFO     | sum of deviations: -80860125995.99998
[2026-01-10 12:26:15] 2026-01-10 11:25:23,240 | INFO     | mean x: 1768033941.0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,240 | INFO     | mean y: 2512337.783382789
[2026-01-10 12:26:15] 2026-01-10 11:25:23,240 | INFO     | intersect: 12049007460.335485
[2026-01-10 12:26:15] 2026-01-10 11:25:23,241 | INFO     | chi2: 1.0474605696403563
[2026-01-10 12:26:15] 2026-01-10 11:25:23,241 | INFO     | current chi2=1.0474605696403563 (change=58.67456586273018 %)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,242 | INFO     | sum of square deviations: 11347200663.0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,245 | INFO     | sum of deviations: -82235955894.5
[2026-01-10 12:26:15] 2026-01-10 11:25:23,246 | INFO     | mean x: 1768034093.5
[2026-01-10 12:26:15] 2026-01-10 11:25:23,246 | INFO     | mean y: 2512719.629518072
[2026-01-10 12:26:15] 2026-01-10 11:25:23,246 | INFO     | intersect: 12815890930.797783
[2026-01-10 12:26:15] 2026-01-10 11:25:23,246 | INFO     | chi2: 1.0179531684362666
[2026-01-10 12:26:15] 2026-01-10 11:25:23,247 | INFO     | current chi2=1.0179531684362666 (change=2.817041715872989 %)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,247 | INFO     | left removable region: 30
[2026-01-10 12:26:15] 2026-01-10 11:25:23,247 | INFO     | sum of square deviations: 9327281860.0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,251 | INFO     | sum of deviations: -27557354571.0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,251 | INFO     | mean x: 1768034368.0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,251 | INFO     | mean y: 2509245.68488746
[2026-01-10 12:26:15] 2026-01-10 11:25:23,251 | INFO     | intersect: 5226147890.254582
[2026-01-10 12:26:15] 2026-01-10 11:25:23,252 | INFO     | chi2: 0.1650805622217815
[2026-01-10 12:26:15] 2026-01-10 11:25:23,252 | INFO     | current memory leak: -2.95 B/s (using 311 data points, chi2=0.17)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,253 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,253 | INFO     | ..............................
[2026-01-10 12:26:15] 2026-01-10 11:25:23,253 | INFO     | . Timing measurements:
[2026-01-10 12:26:15] 2026-01-10 11:25:23,253 | INFO     | . get job = 0 s
[2026-01-10 12:26:15] 2026-01-10 11:25:23,253 | INFO     | . initial setup = 11 s
[2026-01-10 12:26:15] 2026-01-10 11:25:23,253 | INFO     | . payload setup = 147 s
[2026-01-10 12:26:15] 2026-01-10 11:25:23,253 | INFO     | . stage-in = 0 s
[2026-01-10 12:26:15] 2026-01-10 11:25:23,254 | INFO     | . payload execution = 21287 s
[2026-01-10 12:26:15] 2026-01-10 11:25:23,254 | INFO     | . stage-out = 4 s
[2026-01-10 12:26:15] 2026-01-10 11:25:23,254 | INFO     | . log creation = 1 s
[2026-01-10 12:26:15] 2026-01-10 11:25:23,254 | INFO     | ..............................
[2026-01-10 12:26:15] 2026-01-10 11:25:23,574 | INFO     | 
[2026-01-10 12:26:15] 2026-01-10 11:25:23,574 | INFO     | job summary report
[2026-01-10 12:26:15] 2026-01-10 11:25:23,574 | INFO     | --------------------------------------------------
[2026-01-10 12:26:15] 2026-01-10 11:25:23,574 | INFO     | PanDA job id: 6962318689
[2026-01-10 12:26:15] 2026-01-10 11:25:23,574 | INFO     | task id: 47898826
[2026-01-10 12:26:15] 2026-01-10 11:25:23,574 | INFO     | errors: (none)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,575 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:26:15] 2026-01-10 11:25:23,575 | INFO     | pilot state: finished 
[2026-01-10 12:26:15] 2026-01-10 11:25:23,575 | INFO     | transexitcode: 0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,575 | INFO     | exeerrorcode: 0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,575 | INFO     | exeerrordiag: 
[2026-01-10 12:26:15] 2026-01-10 11:25:23,575 | INFO     | exitcode: 0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,575 | INFO     | exitmsg: OK
[2026-01-10 12:26:15] 2026-01-10 11:25:23,575 | INFO     | cpuconsumptiontime: 80524 s
[2026-01-10 12:26:15] 2026-01-10 11:25:23,575 | INFO     | nevents: 400
[2026-01-10 12:26:15] 2026-01-10 11:25:23,575 | INFO     | neventsw: 0
[2026-01-10 12:26:15] 2026-01-10 11:25:23,576 | INFO     | pid: 23427
[2026-01-10 12:26:15] 2026-01-10 11:25:23,576 | INFO     | pgrp: 23427
[2026-01-10 12:26:15] 2026-01-10 11:25:23,576 | INFO     | corecount: 8
[2026-01-10 12:26:15] 2026-01-10 11:25:23,576 | INFO     | event service: False
[2026-01-10 12:26:15] 2026-01-10 11:25:23,576 | INFO     | sizes: {0: 2283740, 1: 2283995, 2: 2283995, 12: 2284023, 23: 2284051, 34: 2284079, 45: 2284235, 55: 2284263, 66: 2284291, 77: 2284319, 87: 2284375, 98: 2284683, 10
[2026-01-10 12:26:15] 2026-01-10 11:25:23,576 | INFO     | --------------------------------------------------
[2026-01-10 12:26:15] 2026-01-10 11:25:23,576 | INFO     | 
[2026-01-10 12:26:15] 2026-01-10 11:25:23,576 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-10 12:26:15] 2026-01-10 11:25:23,889 | INFO     | time since job start (21775s) is within the limit (174528.0s)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,995 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,995 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,995 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,996 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,996 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,996 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,996 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,996 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,996 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,996 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,996 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,996 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,997 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,997 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,997 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,997 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,997 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:26:15] 2026-01-10 11:25:23,997 | INFO     | job 6962318689 has completed (purged errors)
[2026-01-10 12:26:15] 2026-01-10 11:25:23,998 | INFO     | overall cleanup function is called
[2026-01-10 12:26:15] 2026-01-10 11:25:25,007 | INFO     | --- collectZombieJob: --- 10, [23427]
[2026-01-10 12:26:15] 2026-01-10 11:25:25,007 | INFO     | zombie collector waiting for pid 23427
[2026-01-10 12:26:15] 2026-01-10 11:25:25,007 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:26:15] 2026-01-10 11:25:25,007 | INFO     | collected zombie processes
[2026-01-10 12:26:15] 2026-01-10 11:25:25,007 | INFO     | will attempt to kill all subprocesses of pid=23427
[2026-01-10 12:26:15] 2026-01-10 11:25:25,085 | INFO     | process IDs to be killed: [23427] (in reverse order)
[2026-01-10 12:26:15] 2026-01-10 11:25:25,854 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:26:15] 2026-01-10 11:25:25,855 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:26:15] 2026-01-10 11:25:25,858 | INFO     | did not find any defunct processes belonging to 23427
[2026-01-10 12:26:15] 2026-01-10 11:25:25,864 | INFO     | did not find any defunct processes belonging to 23427
[2026-01-10 12:26:15] 2026-01-10 11:25:25,864 | INFO     | ready for new job
[2026-01-10 12:26:15] 2026-01-10 11:25:25,864 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:26:15] 2026-01-10 11:25:25,867 | INFO     | ***************************************
[2026-01-10 12:26:15] 2026-01-10 11:25:25,867 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:26:15] 2026-01-10 11:25:25,867 | INFO     | ***************************************
[2026-01-10 12:26:15] 2026-01-10 11:25:25,867 | INFO     | 
[2026-01-10 12:26:15] 2026-01-10 11:25:25,868 | INFO     | pilot is running in a VM
[2026-01-10 12:26:15] 2026-01-10 11:25:25,868 | INFO     | architecture information:
[2026-01-10 12:26:15] 2026-01-10 11:25:25,880 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:26:15] 2026-01-10 11:25:26,290 | INFO     | cat /etc/os-release:
[2026-01-10 12:26:15] NAME="CentOS Linux"
[2026-01-10 12:26:15] VERSION="7 (Core)"
[2026-01-10 12:26:15] ID="centos"
[2026-01-10 12:26:15] ID_LIKE="rhel fedora"
[2026-01-10 12:26:15] VERSION_ID="7"
[2026-01-10 12:26:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:26:15] ANSI_COLOR="0;31"
[2026-01-10 12:26:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:26:15] HOME_URL="https://www.centos.org/"
[2026-01-10 12:26:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:26:15] 
[2026-01-10 12:26:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:26:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:26:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:26:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:26:15] 
[2026-01-10 12:26:15] 2026-01-10 11:25:26,291 | INFO     | ***************************************
[2026-01-10 12:26:15] 2026-01-10 11:25:26,794 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-10 12:26:15] 2026-01-10 11:25:26,993 | INFO     | sufficient remaining disk space (496740859904 B)
[2026-01-10 12:26:15] 2026-01-10 11:25:26,993 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:26:15] 2026-01-10 11:25:26,993 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:26:15] 2026-01-10 11:25:26,993 | INFO     | update_server=False
[2026-01-10 12:26:15] 2026-01-10 11:25:26,993 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:26:15] 2026-01-10 11:25:27,000 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:26:15] 2026-01-10 11:25:27,000 | INFO     | aborting loop
[2026-01-10 12:26:15] 2026-01-10 11:25:27,786 | INFO     | all data control threads have been joined
[2026-01-10 12:26:15] 2026-01-10 11:25:27,902 | INFO     | all payload control threads have been joined
[2026-01-10 12:26:15] 2026-01-10 11:25:27,946 | INFO     | all job control threads have been joined
[2026-01-10 12:26:15] 2026-01-10 11:25:28,000 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:28,006 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:28,269 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:28,382 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:26:15] 2026-01-10 11:25:28,425 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:26:15] 2026-01-10 11:25:28,550 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:28,792 | INFO     | [data] control thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:28,796 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:28,797 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:28,828 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:28,828 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:28,908 | INFO     | [payload] control thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:28,952 | INFO     | [job] control thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:29,163 | INFO     | [job] validate thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:29,416 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:29,431 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:29,837 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:26:15] 2026-01-10 11:25:30,389 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:33,846 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:26:15] 2026-01-10 11:25:57,058 | INFO     | PID=16941 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 12:26:15] 2026-01-10 11:25:57,059 | INFO     | .. there are 2 such processes running
[2026-01-10 12:26:15] 2026-01-10 11:25:57,060 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:26:15] 2026-01-10 11:25:57,060 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:26:15] 2026-01-10 11:25:57,060 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:26:15] 2026-01-10 11:26:05,127 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:26:15] 2026-01-10 11:26:05,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139907819034432)>', '<ExcThread(monitor, started 139907368457984)>']
[2026-01-10 12:26:15] 2026-01-10 11:26:06,115 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:26:15] 2026-01-10 11:26:06,115 | INFO     | [monitor] control thread has ended
[2026-01-10 12:26:15] 2026-01-10 11:26:10,302 | INFO     | all workflow threads have been joined
[2026-01-10 12:26:15] 2026-01-10 11:26:10,302 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:26:15] 2026-01-10 11:26:10,302 | INFO     | traces error code: 0
[2026-01-10 12:26:15] 2026-01-10 11:26:10,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:26:15] 2026-01-10 11:26:10,707 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:26:15] 2026-01-10 11:26:10,836 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:26:15] 2026-01-10 11:26:10,935 [wrapper] pilotpid: 16941
[2026-01-10 12:26:15] 2026-01-10 11:26:11,052 [wrapper] Pilot exit status: 0
[2026-01-10 12:26:15] 2026-01-10 11:26:11,546 [wrapper] pandaids: 6962318689
[2026-01-10 12:26:15] 2026-01-10 11:26:12,251 [wrapper] cleanup supervisor_pilot 22617 16942
[2026-01-10 12:26:15] 2026-01-10 11:26:12,357 [wrapper] Test setup, not cleaning
[2026-01-10 12:26:15] 2026-01-10 11:26:12,444 [wrapper] apfmon messages muted
[2026-01-10 12:26:15] 2026-01-10 11:26:12,488 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:26:15] 2026-01-10 11:26:12,542 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:26:15]  *** Error codes and diagnostics ***
[2026-01-10 12:26:15]     "exeErrorCode": 0,
[2026-01-10 12:26:15]     "exeErrorDiag": "",
[2026-01-10 12:26:15]     "pilotErrorCode": 0,
[2026-01-10 12:26:15]     "pilotErrorDiag": "",
[2026-01-10 12:26:15]  *** Listing of results directory ***
[2026-01-10 12:26:15] total 446004
[2026-01-10 12:26:15] -rwx------. 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:02 queuedata.json
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc       100 Jan 10 06:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:26:15] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 06:17 run_atlas
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc       105 Jan 10 06:17 job.xml
[2026-01-10 12:26:15] -rw-r--r--. 2 boinc boinc 225844455 Jan 10 06:17 EVNT.47898824._000559.pool.root.1
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc      6390 Jan 10 06:17 init_data.xml
[2026-01-10 12:26:15] -rw-r--r--. 2 boinc boinc     15847 Jan 10 06:17 start_atlas.sh
[2026-01-10 12:26:15] drwxrwx--x. 2 boinc boinc        68 Jan 10 06:17 shared
[2026-01-10 12:26:15] -rw-r--r--. 2 boinc boinc    592397 Jan 10 06:17 input.tar.gz
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc         0 Jan 10 06:17 boinc_lockfile
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc      2518 Jan 10 06:18 pandaJob.out
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc    989374 Jan 10 06:22 agis_schedconf.cvmfs.json
[2026-01-10 12:26:15] drwx------. 5 boinc boinc      4096 Jan 10 06:22 pilot3
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc 220105259 Jan 10 12:21 HITS.47898826._013018.pool.root.1
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc       531 Jan 10 12:22 boinc_task_state.xml
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc      1011 Jan 10 12:23 memory_monitor_summary.json
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc   1516240 Jan 10 12:23 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc    539629 Jan 10 12:23 log.47898826._013018.job.log.tgz.1
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc      7774 Jan 10 12:25 heartbeat.json
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc        95 Jan 10 12:25 pilot_heartbeat.json
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc      8192 Jan 10 12:26 boinc_mmap_file
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc        28 Jan 10 12:26 wrapper_checkpoint.txt
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc      4884 Jan 10 12:26 pilotlog.txt
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc   2889661 Jan 10 12:26 log.47898826._013018.job.log.1
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc       357 Jan 10 12:26 output.list
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc       620 Jan 10 12:26 runtime_log
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc   3450880 Jan 10 12:26 result.tar.gz
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc      8817 Jan 10 12:26 runtime_log.err
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc       657 Jan 10 12:26 21sMDmfnpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdhdKDm2Bcjsn.diag
[2026-01-10 12:26:15] -rw-r--r--. 1 boinc boinc     20767 Jan 10 12:26 stderr.txt
[2026-01-10 12:26:15] HITS file was successfully produced:
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc 220105259 Jan 10 12:21 shared/HITS.pool.root.1
[2026-01-10 12:26:15]  *** Contents of shared directory: ***
[2026-01-10 12:26:15] total 439468
[2026-01-10 12:26:15] -rw-r--r--. 2 boinc boinc 225844455 Jan 10 06:17 ATLAS.root_0
[2026-01-10 12:26:15] -rw-r--r--. 2 boinc boinc     15847 Jan 10 06:17 start_atlas.sh
[2026-01-10 12:26:15] -rw-r--r--. 2 boinc boinc    592397 Jan 10 06:17 input.tar.gz
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc 220105259 Jan 10 12:21 HITS.pool.root.1
[2026-01-10 12:26:15] -rw-------. 1 boinc boinc   3450880 Jan 10 12:26 result.tar.gz
12:26:17 (13160): run_atlas exited; CPU time 80744.456534
12:26:17 (13160): called boinc_finish(0)

</stderr_txt>
]]>

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