Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:22:25 (3923): wrapper (7.7.26015): starting
00:22:25 (3923): wrapper: running run_atlas (--nthreads 8)
[2026-01-11 00:22:25] Arguments: --nthreads 8
[2026-01-11 00:22:25] Threads: 8
[2026-01-11 00:22:25] Checking for CVMFS
[2026-01-11 00:22:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 00:22:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 00:22:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 00:22:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 00:22:29] 2.11.2.0 26786 37508 102900 154997 2 60 20361799 25165825 899 130560 0 15737083 99.826 10108278 3298 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-11 00:22:29] CVMFS is ok
[2026-01-11 00:22:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 00:22:29] Checking for apptainer binary...
[2026-01-11 00:22:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 00:22:29] Running /usr/bin/apptainer --version
[2026-01-11 00:22:29] apptainer version 1.3.2-1.el7
[2026-01-11 00:22:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 00:22:50] cg-vwn410.simple-grid.lan
[2026-01-11 00:22:50] apptainer works
[2026-01-11 00:22:50] Set ATHENA_PROC_NUMBER=8
[2026-01-11 00:22:50] Set ATHENA_CORE_NUMBER=8
[2026-01-11 00:22:50] Starting ATLAS job with PandaID=6963168834
[2026-01-11 00:22:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 06:28:00]  *** The last 200 lines of the pilot log: ***
[2026-01-11 06:28:00] 2026-01-11 05:26:48,083 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 06:28:00] 2026-01-11 05:26:48,084 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-11 06:28:00] 2026-01-11 05:26:48,093 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6963168834/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 06:28:00] 2026-01-11 05:26:48,094 | INFO     | extracted standard info from prmon json
[2026-01-11 06:28:00] 2026-01-11 05:26:48,094 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 06:28:00] 2026-01-11 05:26:48,094 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 06:28:00] 2026-01-11 05:26:48,094 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 06:28:00] 2026-01-11 05:26:48,095 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 06:28:00] 2026-01-11 05:26:48,102 | INFO     | fitting pss+swap vs Time
[2026-01-11 06:28:00] 2026-01-11 05:26:48,103 | INFO     | sum of square deviations: 12512874612.0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,106 | INFO     | sum of deviations: 121973492511.0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,107 | INFO     | mean x: 1768098593.0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,107 | INFO     | mean y: 2461052.9504373176
[2026-01-11 06:28:00] 2026-01-11 05:26:48,107 | INFO     | intersect: -17232680125.973667
[2026-01-11 06:28:00] 2026-01-11 05:26:48,107 | INFO     | chi2: 6.626957158250816
[2026-01-11 06:28:00] 2026-01-11 05:26:48,108 | INFO     | sum of square deviations: 11973599384.5
[2026-01-11 06:28:00] 2026-01-11 05:26:48,120 | INFO     | sum of deviations: 142766399427.50006
[2026-01-11 06:28:00] 2026-01-11 05:26:48,120 | INFO     | mean x: 1768098440.5
[2026-01-11 06:28:00] 2026-01-11 05:26:48,120 | INFO     | mean y: 2466856.8372781067
[2026-01-11 06:28:00] 2026-01-11 05:26:48,121 | INFO     | intersect: -21079334870.246635
[2026-01-11 06:28:00] 2026-01-11 05:26:48,121 | INFO     | chi2: 5.893881357349127
[2026-01-11 06:28:00] 2026-01-11 05:26:48,121 | INFO     | current chi2=5.893881357349127 (change=11.062027162631976 %)
[2026-01-11 06:28:00] 2026-01-11 05:26:48,121 | INFO     | right removable region: 337
[2026-01-11 06:28:00] 2026-01-11 05:26:48,122 | INFO     | sum of square deviations: 11973599384.5
[2026-01-11 06:28:00] 2026-01-11 05:26:48,126 | INFO     | sum of deviations: 7525496159.500011
[2026-01-11 06:28:00] 2026-01-11 05:26:48,126 | INFO     | mean x: 1768098745.5
[2026-01-11 06:28:00] 2026-01-11 05:26:48,126 | INFO     | mean y: 2493392.949704142
[2026-01-11 06:28:00] 2026-01-11 05:26:48,126 | INFO     | intersect: -1108769802.9863164
[2026-01-11 06:28:00] 2026-01-11 05:26:48,127 | INFO     | chi2: 2.3323299576390237
[2026-01-11 06:28:00] 2026-01-11 05:26:48,127 | INFO     | current chi2=2.3323299576390237 (change=64.80541669512404 %)
[2026-01-11 06:28:00] 2026-01-11 05:26:48,128 | INFO     | sum of square deviations: 11450045382.0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,131 | INFO     | sum of deviations: -50961170951.99999
[2026-01-11 06:28:00] 2026-01-11 05:26:48,132 | INFO     | mean x: 1768098898.0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,132 | INFO     | mean y: 2510356.624624625
[2026-01-11 06:28:00] 2026-01-11 05:26:48,132 | INFO     | intersect: 7871858223.373612
[2026-01-11 06:28:00] 2026-01-11 05:26:48,133 | INFO     | chi2: 0.9698775309449328
[2026-01-11 06:28:00] 2026-01-11 05:26:48,133 | INFO     | current chi2=0.9698775309449328 (change=58.415938200840046 %)
[2026-01-11 06:28:00] 2026-01-11 05:26:48,133 | INFO     | sum of square deviations: 10941980042.0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,137 | INFO     | sum of deviations: -56347212312.00001
[2026-01-11 06:28:00] 2026-01-11 05:26:48,137 | INFO     | mean x: 1768099050.5
[2026-01-11 06:28:00] 2026-01-11 05:26:48,137 | INFO     | mean y: 2511969.7560975607
[2026-01-11 06:28:00] 2026-01-11 05:26:48,137 | INFO     | intersect: 9107578164.791761
[2026-01-11 06:28:00] 2026-01-11 05:26:48,138 | INFO     | chi2: 0.9524554946826895
[2026-01-11 06:28:00] 2026-01-11 05:26:48,138 | INFO     | current chi2=0.9524554946826895 (change=1.796313009258943 %)
[2026-01-11 06:28:00] 2026-01-11 05:26:48,138 | INFO     | left removable region: 30
[2026-01-11 06:28:00] 2026-01-11 05:26:48,146 | INFO     | sum of square deviations: 8971993338.0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,149 | INFO     | sum of deviations: -2549292419.000001
[2026-01-11 06:28:00] 2026-01-11 05:26:48,150 | INFO     | mean x: 1768099325.0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,150 | INFO     | mean y: 2508460.247557003
[2026-01-11 06:28:00] 2026-01-11 05:26:48,158 | INFO     | intersect: 504894277.4740207
[2026-01-11 06:28:00] 2026-01-11 05:26:48,159 | INFO     | chi2: 0.07634929121217515
[2026-01-11 06:28:00] 2026-01-11 05:26:48,159 | INFO     | current memory leak: -0.28 B/s (using 307 data points, chi2=0.08)
[2026-01-11 06:28:00] 2026-01-11 05:26:48,159 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-11 06:28:00] 2026-01-11 05:26:48,160 | INFO     | ..............................
[2026-01-11 06:28:00] 2026-01-11 05:26:48,160 | INFO     | . Timing measurements:
[2026-01-11 06:28:00] 2026-01-11 05:26:48,160 | INFO     | . get job = 0 s
[2026-01-11 06:28:00] 2026-01-11 05:26:48,160 | INFO     | . initial setup = 12 s
[2026-01-11 06:28:00] 2026-01-11 05:26:48,160 | INFO     | . payload setup = 143 s
[2026-01-11 06:28:00] 2026-01-11 05:26:48,160 | INFO     | . stage-in = 0 s
[2026-01-11 06:28:00] 2026-01-11 05:26:48,160 | INFO     | . payload execution = 21093 s
[2026-01-11 06:28:00] 2026-01-11 05:26:48,161 | INFO     | . stage-out = 4 s
[2026-01-11 06:28:00] 2026-01-11 05:26:48,161 | INFO     | . log creation = 1 s
[2026-01-11 06:28:00] 2026-01-11 05:26:48,161 | INFO     | ..............................
[2026-01-11 06:28:00] 2026-01-11 05:26:48,298 | INFO     | 
[2026-01-11 06:28:00] 2026-01-11 05:26:48,298 | INFO     | job summary report
[2026-01-11 06:28:00] 2026-01-11 05:26:48,298 | INFO     | --------------------------------------------------
[2026-01-11 06:28:00] 2026-01-11 05:26:48,299 | INFO     | PanDA job id: 6963168834
[2026-01-11 06:28:00] 2026-01-11 05:26:48,299 | INFO     | task id: 47898826
[2026-01-11 06:28:00] 2026-01-11 05:26:48,299 | INFO     | errors: (none)
[2026-01-11 06:28:00] 2026-01-11 05:26:48,299 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 06:28:00] 2026-01-11 05:26:48,299 | INFO     | pilot state: finished 
[2026-01-11 06:28:00] 2026-01-11 05:26:48,299 | INFO     | transexitcode: 0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,299 | INFO     | exeerrorcode: 0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,299 | INFO     | exeerrordiag: 
[2026-01-11 06:28:00] 2026-01-11 05:26:48,299 | INFO     | exitcode: 0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,300 | INFO     | exitmsg: OK
[2026-01-11 06:28:00] 2026-01-11 05:26:48,300 | INFO     | cpuconsumptiontime: 79458 s
[2026-01-11 06:28:00] 2026-01-11 05:26:48,306 | INFO     | nevents: 400
[2026-01-11 06:28:00] 2026-01-11 05:26:48,307 | INFO     | neventsw: 0
[2026-01-11 06:28:00] 2026-01-11 05:26:48,307 | INFO     | pid: 14139
[2026-01-11 06:28:00] 2026-01-11 05:26:48,307 | INFO     | pgrp: 14139
[2026-01-11 06:28:00] 2026-01-11 05:26:48,307 | INFO     | corecount: 8
[2026-01-11 06:28:00] 2026-01-11 05:26:48,307 | INFO     | event service: False
[2026-01-11 06:28:00] 2026-01-11 05:26:48,307 | INFO     | sizes: {0: 2283143, 1: 2283828, 2: 2284027, 13: 2284027, 23: 2284083, 34: 2284111, 45: 2284267, 55: 2284295, 66: 2284323, 77: 2284351, 88: 2284407, 98: 2284715, 10
[2026-01-11 06:28:00] 2026-01-11 05:26:48,307 | INFO     | --------------------------------------------------
[2026-01-11 06:28:00] 2026-01-11 05:26:48,307 | INFO     | 
[2026-01-11 06:28:00] 2026-01-11 05:26:48,308 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-01-11 06:28:00] 2026-01-11 05:26:48,847 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,848 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,848 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,848 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,848 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,848 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,848 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,848 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,849 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,849 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,849 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,849 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,849 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,849 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,849 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,849 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,849 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,849 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 06:28:00] 2026-01-11 05:26:48,850 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,850 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 06:28:00] 2026-01-11 05:26:48,850 | INFO     | job 6963168834 has completed (purged errors)
[2026-01-11 06:28:00] 2026-01-11 05:26:48,850 | INFO     | overall cleanup function is called
[2026-01-11 06:28:00] 2026-01-11 05:26:49,859 | INFO     | --- collectZombieJob: --- 10, [14139]
[2026-01-11 06:28:00] 2026-01-11 05:26:49,859 | INFO     | zombie collector waiting for pid 14139
[2026-01-11 06:28:00] 2026-01-11 05:26:49,859 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 06:28:00] 2026-01-11 05:26:49,860 | INFO     | collected zombie processes
[2026-01-11 06:28:00] 2026-01-11 05:26:49,860 | INFO     | will attempt to kill all subprocesses of pid=14139
[2026-01-11 06:28:00] 2026-01-11 05:26:49,955 | INFO     | process IDs to be killed: [14139] (in reverse order)
[2026-01-11 06:28:00] 2026-01-11 05:26:50,756 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 06:28:00] 2026-01-11 05:26:50,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 06:28:00] 2026-01-11 05:26:50,758 | INFO     | did not find any defunct processes belonging to 14139
[2026-01-11 06:28:00] 2026-01-11 05:26:50,760 | INFO     | did not find any defunct processes belonging to 14139
[2026-01-11 06:28:00] 2026-01-11 05:26:50,760 | INFO     | ready for new job
[2026-01-11 06:28:00] 2026-01-11 05:26:50,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 06:28:00] 2026-01-11 05:26:50,762 | INFO     | ***************************************
[2026-01-11 06:28:00] 2026-01-11 05:26:50,763 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 06:28:00] 2026-01-11 05:26:50,763 | INFO     | ***************************************
[2026-01-11 06:28:00] 2026-01-11 05:26:50,763 | INFO     | 
[2026-01-11 06:28:00] 2026-01-11 05:26:50,763 | INFO     | pilot is running in a VM
[2026-01-11 06:28:00] 2026-01-11 05:26:50,764 | INFO     | architecture information:
[2026-01-11 06:28:00] 2026-01-11 05:26:50,769 | INFO     | executing command: cat /etc/os-release
[2026-01-11 06:28:00] 2026-01-11 05:26:50,985 | INFO     | cat /etc/os-release:
[2026-01-11 06:28:00] NAME="CentOS Linux"
[2026-01-11 06:28:00] VERSION="7 (Core)"
[2026-01-11 06:28:00] ID="centos"
[2026-01-11 06:28:00] ID_LIKE="rhel fedora"
[2026-01-11 06:28:00] VERSION_ID="7"
[2026-01-11 06:28:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 06:28:00] ANSI_COLOR="0;31"
[2026-01-11 06:28:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 06:28:00] HOME_URL="https://www.centos.org/"
[2026-01-11 06:28:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 06:28:00] 
[2026-01-11 06:28:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 06:28:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 06:28:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 06:28:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 06:28:00] 
[2026-01-11 06:28:00] 2026-01-11 05:26:50,985 | INFO     | ***************************************
[2026-01-11 06:28:00] 2026-01-11 05:26:51,489 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-01-11 06:28:00] 2026-01-11 05:26:51,573 | INFO     | sufficient remaining disk space (496790142976 B)
[2026-01-11 06:28:00] 2026-01-11 05:26:51,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 06:28:00] 2026-01-11 05:26:51,573 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 06:28:00] 2026-01-11 05:26:51,573 | INFO     | update_server=False
[2026-01-11 06:28:00] 2026-01-11 05:26:51,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 06:28:00] 2026-01-11 05:26:51,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 06:28:00] 2026-01-11 05:26:51,821 | INFO     | all data control threads have been joined
[2026-01-11 06:28:00] 2026-01-11 05:26:52,034 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:28:00] 2026-01-11 05:26:52,034 | INFO     | aborting loop
[2026-01-11 06:28:00] 2026-01-11 05:26:52,118 | INFO     | all payload control threads have been joined
[2026-01-11 06:28:00] 2026-01-11 05:26:52,579 | INFO     | [job] retrieve thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:52,749 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:52,827 | INFO     | [data] control thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:52,954 | INFO     | all job control threads have been joined
[2026-01-11 06:28:00] 2026-01-11 05:26:53,040 | INFO     | [job] job monitor thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:53,050 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:53,124 | INFO     | [payload] control thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:53,264 | INFO     | [job] validate thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:53,277 | INFO     | [data] copytool_in thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:53,315 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:53,316 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:28:00] 2026-01-11 05:26:53,387 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:53,581 | INFO     | [data] copytool_out thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:53,836 | INFO     | [payload] failed_post thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:53,960 | INFO     | [job] control thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:53,975 | INFO     | [payload] validate_post thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:54,322 | INFO     | [job] queue monitor thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:26:54,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 06:28:00] 2026-01-11 05:26:58,483 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 06:28:00] 2026-01-11 05:27:14,386 [wrapper] supervise_pilot (15 min periods counter: 25)
[2026-01-11 06:28:00] 2026-01-11 05:27:21,148 | INFO     | PID=7670 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 06:28:00] 2026-01-11 05:27:21,148 | INFO     | .. there are 2 such processes running
[2026-01-11 06:28:00] 2026-01-11 05:27:21,148 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 06:28:00] 2026-01-11 05:27:21,149 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 06:28:00] 2026-01-11 05:27:21,149 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 06:28:00] 2026-01-11 05:27:48,392 | INFO     | [monitor] cgroup control has ended
[2026-01-11 06:28:00] 2026-01-11 05:27:50,422 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139724118173504)>', '<ExcThread(monitor, started 139723389523712)>']
[2026-01-11 06:28:00] 2026-01-11 05:27:51,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 06:28:00] 2026-01-11 05:27:51,329 | INFO     | [monitor] control thread has ended
[2026-01-11 06:28:00] 2026-01-11 05:27:55,448 | INFO     | all workflow threads have been joined
[2026-01-11 06:28:00] 2026-01-11 05:27:55,448 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 06:28:00] 2026-01-11 05:27:55,449 | INFO     | traces error code: 0
[2026-01-11 06:28:00] 2026-01-11 05:27:55,449 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 06:28:00] 2026-01-11 05:27:55,749 [wrapper] ==== pilot stdout END ====
[2026-01-11 06:28:00] 2026-01-11 05:27:55,816 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 06:28:00] 2026-01-11 05:27:55,942 [wrapper] pilotpid: 7670
[2026-01-11 06:28:00] 2026-01-11 05:27:56,033 [wrapper] Pilot exit status: 0
[2026-01-11 06:28:00] 2026-01-11 05:27:56,507 [wrapper] pandaids: 6963168834
[2026-01-11 06:28:00] 2026-01-11 05:27:57,856 [wrapper] cleanup supervisor_pilot 15658 7671
[2026-01-11 06:28:00] 2026-01-11 05:27:57,979 [wrapper] Test setup, not cleaning
[2026-01-11 06:28:00] 2026-01-11 05:27:58,060 [wrapper] apfmon messages muted
[2026-01-11 06:28:00] 2026-01-11 05:27:58,159 [wrapper] ==== wrapper stdout END ====
[2026-01-11 06:28:00] 2026-01-11 05:27:58,245 [wrapper] ==== wrapper stderr END ====
[2026-01-11 06:28:00]  *** Error codes and diagnostics ***
[2026-01-11 06:28:00]     "exeErrorCode": 0,
[2026-01-11 06:28:00]     "exeErrorDiag": "",
[2026-01-11 06:28:00]     "pilotErrorCode": 0,
[2026-01-11 06:28:00]     "pilotErrorDiag": "",
[2026-01-11 06:28:00]  *** Listing of results directory ***
[2026-01-11 06:28:00] total 448336
[2026-01-11 06:28:00] -rwx------. 1 boinc boinc     36322 Jan  9 02:01 runpilot2-wrapper.sh
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:06 queuedata.json
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc    579449 Jan  9 02:06 pilot3.tar.gz
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc       100 Jan 11 00:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 06:28:00] -rwxr-xr-x. 1 boinc boinc      7986 Jan 11 00:22 run_atlas
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc       105 Jan 11 00:22 job.xml
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc      6391 Jan 11 00:22 init_data.xml
[2026-01-11 06:28:00] -rw-r--r--. 2 boinc boinc 225412068 Jan 11 00:22 EVNT.47898824._001393.pool.root.1
[2026-01-11 06:28:00] -rw-r--r--. 2 boinc boinc     15847 Jan 11 00:22 start_atlas.sh
[2026-01-11 06:28:00] drwxrwx--x. 2 boinc boinc        68 Jan 11 00:22 shared
[2026-01-11 06:28:00] -rw-r--r--. 2 boinc boinc    592408 Jan 11 00:22 input.tar.gz
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc         0 Jan 11 00:22 boinc_lockfile
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc      2520 Jan 11 00:22 pandaJob.out
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc    989548 Jan 11 00:27 agis_schedconf.cvmfs.json
[2026-01-11 06:28:00] drwx------. 5 boinc boinc      4096 Jan 11 00:27 pilot3
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc 222953927 Jan 11 06:23 HITS.47898826._036361.pool.root.1
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc       531 Jan 11 06:23 boinc_task_state.xml
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc      1011 Jan 11 06:24 memory_monitor_summary.json
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc   1516240 Jan 11 06:24 agis_ddmendpoints.agis.ALL.json
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc    547397 Jan 11 06:24 log.47898826._036361.job.log.tgz.1
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc        95 Jan 11 06:26 pilot_heartbeat.json
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc      7779 Jan 11 06:26 heartbeat.json
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc      8192 Jan 11 06:27 boinc_mmap_file
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc        28 Jan 11 06:27 wrapper_checkpoint.txt
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc      4883 Jan 11 06:27 pilotlog.txt
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc   2865733 Jan 11 06:27 log.47898826._036361.job.log.1
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc       357 Jan 11 06:27 output.list
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc       620 Jan 11 06:27 runtime_log
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc   3430400 Jan 11 06:27 result.tar.gz
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc      8817 Jan 11 06:28 runtime_log.err
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc       657 Jan 11 06:28 c9pMDmZ3Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSngKDmU3Z2Im.diag
[2026-01-11 06:28:00] -rw-r--r--. 1 boinc boinc     20762 Jan 11 06:28 stderr.txt
[2026-01-11 06:28:00] HITS file was successfully produced:
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc 222953927 Jan 11 06:23 shared/HITS.pool.root.1
[2026-01-11 06:28:00]  *** Contents of shared directory: ***
[2026-01-11 06:28:00] total 441812
[2026-01-11 06:28:00] -rw-r--r--. 2 boinc boinc 225412068 Jan 11 00:22 ATLAS.root_0
[2026-01-11 06:28:00] -rw-r--r--. 2 boinc boinc     15847 Jan 11 00:22 start_atlas.sh
[2026-01-11 06:28:00] -rw-r--r--. 2 boinc boinc    592408 Jan 11 00:22 input.tar.gz
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc 222953927 Jan 11 06:23 HITS.pool.root.1
[2026-01-11 06:28:00] -rw-------. 1 boinc boinc   3430400 Jan 11 06:27 result.tar.gz
06:28:01 (3923): run_atlas exited; CPU time 79665.880589
06:28:01 (3923): called boinc_finish(0)

</stderr_txt>
]]>

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