Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:42:18 (456318): wrapper (7.7.26015): starting
04:42:18 (456318): wrapper: running run_atlas (--nthreads 2)
[2026-01-10 04:42:18] Arguments: --nthreads 2
[2026-01-10 04:42:18] Threads: 2
[2026-01-10 04:42:18] Checking for CVMFS
[2026-01-10 04:42:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 04:42:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 04:42:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 04:42:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 04:42:19] 2.9.2.0 4183069 2434 55624 154966 2 57 21806285 36864001 0 130560 0 1161255 99.985 91736 5858 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 04:42:19] CVMFS is ok
[2026-01-10 04:42:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 04:42:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 04:42:19] Further information can be found at the LHC@home message board.
[2026-01-10 04:42:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 04:42:19] Checking for apptainer binary...
[2026-01-10 04:42:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 04:42:19] Running /usr/bin/apptainer --version
[2026-01-10 04:42:19] apptainer version 1.4.1-1.1
[2026-01-10 04:42:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 04:42:19] thA389
[2026-01-10 04:42:19] apptainer works
[2026-01-10 04:42:19] Set ATHENA_PROC_NUMBER=2
[2026-01-10 04:42:19] Set ATHENA_CORE_NUMBER=2
[2026-01-10 04:42:19] Starting ATLAS job with PandaID=6962915447
[2026-01-10 04:42:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:40:10]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:40:10] 2026-01-10 06:39:38,656 | INFO     | number of running child processes to parent process 466458: 1
[2026-01-10 07:40:10] 2026-01-10 06:39:38,656 | INFO     | maximum number of monitored processes: 6
[2026-01-10 07:40:10] 2026-01-10 06:39:38,656 | INFO     | aborting job monitoring since job object (job id=6962915447) has expired
[2026-01-10 07:40:10] 2026-01-10 06:39:39,639 | INFO     | --- collectZombieJob: --- 10, [466458]
[2026-01-10 07:40:10] 2026-01-10 06:39:39,639 | INFO     | zombie collector waiting for pid 466458
[2026-01-10 07:40:10] 2026-01-10 06:39:39,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:40:10] 2026-01-10 06:39:39,639 | INFO     | collected zombie processes
[2026-01-10 07:40:10] 2026-01-10 06:39:39,640 | INFO     | will attempt to kill all subprocesses of pid=466458
[2026-01-10 07:40:10] 2026-01-10 06:39:39,671 | INFO     | process IDs to be killed: [466458] (in reverse order)
[2026-01-10 07:40:10] 2026-01-10 06:39:39,690 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:40:10] 2026-01-10 06:39:39,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:40:10] 2026-01-10 06:39:39,691 | INFO     | did not find any defunct processes belonging to 466458
[2026-01-10 07:40:10] 2026-01-10 06:39:39,692 | INFO     | did not find any defunct processes belonging to 466458
[2026-01-10 07:40:10] 2026-01-10 06:39:39,692 | INFO     | ready for new job
[2026-01-10 07:40:10] 2026-01-10 06:39:39,692 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:40:10] 2026-01-10 06:39:39,693 | INFO     | ***************************************
[2026-01-10 07:40:10] 2026-01-10 06:39:39,693 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:40:10] 2026-01-10 06:39:39,693 | INFO     | ***************************************
[2026-01-10 07:40:10] 2026-01-10 06:39:39,693 | INFO     | 
[2026-01-10 07:40:10] 2026-01-10 06:39:39,693 | INFO     | architecture information:
[2026-01-10 07:40:10] 2026-01-10 06:39:39,693 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:40:10] 2026-01-10 06:39:39,702 | INFO     | cat /etc/os-release:
[2026-01-10 07:40:10] NAME="CentOS Linux"
[2026-01-10 07:40:10] VERSION="7 (Core)"
[2026-01-10 07:40:10] ID="centos"
[2026-01-10 07:40:10] ID_LIKE="rhel fedora"
[2026-01-10 07:40:10] VERSION_ID="7"
[2026-01-10 07:40:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:40:10] ANSI_COLOR="0;31"
[2026-01-10 07:40:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:40:10] HOME_URL="https://www.centos.org/"
[2026-01-10 07:40:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:40:10] 
[2026-01-10 07:40:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:40:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:40:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:40:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:40:10] 
[2026-01-10 07:40:10] 2026-01-10 06:39:39,702 | INFO     | ***************************************
[2026-01-10 07:40:10] 2026-01-10 06:39:40,205 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 07:40:10] 2026-01-10 06:39:40,216 | INFO     | sufficient remaining disk space (841251553280 B)
[2026-01-10 07:40:10] 2026-01-10 06:39:40,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:40:10] 2026-01-10 06:39:40,216 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:40:10] 2026-01-10 06:39:40,216 | INFO     | update_server=False
[2026-01-10 07:40:10] 2026-01-10 06:39:40,216 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:40:10] 2026-01-10 06:39:40,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:40:10] 2026-01-10 06:39:40,217 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:40:10] 2026-01-10 06:39:40,217 | INFO     | aborting loop
[2026-01-10 07:40:10] 2026-01-10 06:39:40,908 | INFO     | all data control threads have been joined
[2026-01-10 07:40:10] 2026-01-10 06:39:41,222 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:41,223 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:41,224 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:41,224 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:41,292 | INFO     | all job control threads have been joined
[2026-01-10 07:40:10] 2026-01-10 06:39:41,505 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:41,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:40:10] 2026-01-10 06:39:41,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:40:10] 2026-01-10 06:39:41,713 | INFO     | all payload control threads have been joined
[2026-01-10 07:40:10] 2026-01-10 06:39:41,914 | INFO     | [data] control thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:41,961 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:42,100 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:42,170 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:42,298 | INFO     | [job] control thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:42,380 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:42,422 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:42,578 | INFO     | [job] validate thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:42,719 | INFO     | [payload] control thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:43,580 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:45,602 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:40:10] 2026-01-10 06:39:46,302 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:40:10] 2026-01-10 06:39:47,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140396612679488)>', '<ExcThread(monitor, started 140395904235264)>']
[2026-01-10 07:40:10] 2026-01-10 06:39:52,470 | INFO     | all workflow threads have been joined
[2026-01-10 07:40:10] 2026-01-10 06:39:52,470 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:40:10] 2026-01-10 06:39:52,471 | INFO     | traces error code: 0
[2026-01-10 07:40:10] 2026-01-10 06:39:52,471 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:40:10] 2026-01-10 06:40:10,294 | INFO     | PID=460032 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 07:40:10] 2026-01-10 06:40:10,294 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:40:10] 2026-01-10 06:40:10,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:40:10] 2026-01-10 06:40:10,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:40:10] 2026-01-10 06:40:10,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:40:10] 2026-01-10 06:40:10,294 | INFO     | [monitor] control thread has ended
[2026-01-10 07:40:10] 2026-01-10 06:40:10,331 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:40:10] 2026-01-10 06:40:10,334 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:40:10] 2026-01-10 06:40:10,336 [wrapper] pilotpid: 460032
[2026-01-10 07:40:10] 2026-01-10 06:40:10,338 [wrapper] Pilot exit status: 0
[2026-01-10 07:40:10] 2026-01-10 06:40:10,343 [wrapper] pandaids: 6962915447
[2026-01-10 07:40:10] 2026-01-10 06:40:10,354 [wrapper] cleanup supervisor_pilot  486136 460033
[2026-01-10 07:40:10] 2026-01-10 06:40:10,357 [wrapper] Test setup, not cleaning
[2026-01-10 07:40:10] 2026-01-10 06:40:10,358 [wrapper] apfmon messages muted
[2026-01-10 07:40:10] 2026-01-10 06:40:10,360 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:40:10] 2026-01-10 06:40:10,362 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:40:10]  *** Error codes and diagnostics ***
[2026-01-10 07:40:10]     "exeErrorCode": 0,
[2026-01-10 07:40:10]     "exeErrorDiag": "",
[2026-01-10 07:40:10]     "pilotErrorCode": 0,
[2026-01-10 07:40:10]     "pilotErrorDiag": "",
[2026-01-10 07:40:10]  *** Listing of results directory ***
[2026-01-10 07:40:10] total 452504
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-10 07:40:10] -rwx------ 1 boinc boinc     36322 Jan  8 09:01 runpilot2-wrapper.sh
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:03 queuedata.json
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc       100 Jan 10 04:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:40:10] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 04:42 run_atlas
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc       105 Jan 10 04:42 job.xml
[2026-01-10 07:40:10] -rw-r--r-- 2 boinc boinc 227366877 Jan 10 04:42 EVNT.47898824._000400.pool.root.1
[2026-01-10 07:40:10] -rw-r--r-- 2 boinc boinc    592398 Jan 10 04:42 input.tar.gz
[2026-01-10 07:40:10] -rw-r--r-- 2 boinc boinc     15847 Jan 10 04:42 start_atlas.sh
[2026-01-10 07:40:10] drwxrwx--x 2 boinc boinc      4096 Jan 10 04:42 shared
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc         0 Jan 10 04:42 boinc_setup_complete
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc      6281 Jan 10 04:42 init_data.xml
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc         0 Jan 10 04:42 boinc_lockfile
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc      2518 Jan 10 04:42 pandaJob.out
[2026-01-10 07:40:10] -rw------- 1 boinc boinc    989374 Jan 10 04:42 agis_schedconf.cvmfs.json
[2026-01-10 07:40:10] -rw------- 1 boinc boinc   1516240 Jan 10 04:42 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:40:10] drwx------ 5 boinc boinc      4096 Jan 10 04:42 pilot3
[2026-01-10 07:40:10] -rw------- 1 boinc boinc 228435914 Jan 10 07:39 HITS.47898826._018189.pool.root.1
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc       530 Jan 10 07:39 boinc_task_state.xml
[2026-01-10 07:40:10] -rw------- 1 boinc boinc        95 Jan 10 07:39 pilot_heartbeat.json
[2026-01-10 07:40:10] -rw------- 1 boinc boinc      1012 Jan 10 07:39 memory_monitor_summary.json
[2026-01-10 07:40:10] -rw------- 1 boinc boinc    322285 Jan 10 07:39 log.47898826._018189.job.log.tgz.1
[2026-01-10 07:40:10] -rw------- 1 boinc boinc      7751 Jan 10 07:39 heartbeat.json
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc      8192 Jan 10 07:39 boinc_mmap_file
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc        28 Jan 10 07:39 wrapper_checkpoint.txt
[2026-01-10 07:40:10] -rw------- 1 boinc boinc       746 Jan 10 07:40 pilotlog.txt
[2026-01-10 07:40:10] -rw------- 1 boinc boinc   1507162 Jan 10 07:40 log.47898826._018189.job.log.1
[2026-01-10 07:40:10] -rw------- 1 boinc boinc       357 Jan 10 07:40 output.list
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc       620 Jan 10 07:40 runtime_log
[2026-01-10 07:40:10] -rw------- 1 boinc boinc   1853440 Jan 10 07:40 result.tar.gz
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc      8898 Jan 10 07:40 runtime_log.err
[2026-01-10 07:40:10] -rw------- 1 boinc boinc       661 Jan 10 07:40 1giLDmv8zx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkKeKDmCaUSFo.diag
[2026-01-10 07:40:10] -rw-r--r-- 1 boinc boinc     10956 Jan 10 07:40 stderr.txt
[2026-01-10 07:40:10] HITS file was successfully produced:
[2026-01-10 07:40:10] -rw------- 1 boinc boinc 228435914 Jan 10 07:39 shared/HITS.pool.root.1
[2026-01-10 07:40:10]  *** Contents of shared directory: ***
[2026-01-10 07:40:10] total 447540
[2026-01-10 07:40:10] -rw-r--r-- 2 boinc boinc 227366877 Jan 10 04:42 ATLAS.root_0
[2026-01-10 07:40:10] -rw-r--r-- 2 boinc boinc    592398 Jan 10 04:42 input.tar.gz
[2026-01-10 07:40:10] -rw-r--r-- 2 boinc boinc     15847 Jan 10 04:42 start_atlas.sh
[2026-01-10 07:40:10] -rw------- 1 boinc boinc 228435914 Jan 10 07:39 HITS.pool.root.1
[2026-01-10 07:40:10] -rw------- 1 boinc boinc   1853440 Jan 10 07:40 result.tar.gz
07:40:12 (456318): run_atlas exited; CPU time 20841.146571
07:40:12 (456318): called boinc_finish(0)

</stderr_txt>
]]>

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