Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:38:18 (641446): wrapper (7.7.26015): starting
17:38:18 (641446): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:38:18] Arguments: --nthreads 8
[2026-01-09 17:38:18] Threads: 8
[2026-01-09 17:38:18] Checking for CVMFS
[2026-01-09 17:38:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:38:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:38:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:38:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:38:19] 2.13.3.0 9856 24157 197416 154959 3 338 23696197 40960001 19359 16776704 0 29189539 99.741 20427333 40053 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 17:38:19] CVMFS is ok
[2026-01-09 17:38:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:38:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:38:19] Further information can be found at the LHC@home message board.
[2026-01-09 17:38:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:38:19] Checking for apptainer binary...
[2026-01-09 17:38:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:38:20] Running /usr/bin/apptainer --version
[2026-01-09 17:38:20] apptainer version 1.4.5-2.el9
[2026-01-09 17:38:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:38:20] c-211-33-2.aglt2.org
[2026-01-09 17:38:20] apptainer works
[2026-01-09 17:38:20] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:38:20] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:38:20] Starting ATLAS job with PandaID=6962016330
[2026-01-09 17:38:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:38:56]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:38:56] 2026-01-10 03:38:14,374 | INFO     | time since job start (17936s) is within the limit (174528.0s)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,377 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2674.2417708333332
[2026-01-09 22:38:56] 2026-01-10 03:38:14,395 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6962016330/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,396 | INFO     | extracted standard info from prmon json
[2026-01-09 22:38:56] 2026-01-10 03:38:14,396 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 22:38:56] 2026-01-10 03:38:14,397 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 22:38:56] 2026-01-10 03:38:14,397 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 22:38:56] 2026-01-10 03:38:14,397 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 22:38:56] 2026-01-10 03:38:14,403 | INFO     | fitting pss+swap vs Time
[2026-01-09 22:38:56] 2026-01-10 03:38:14,403 | INFO     | sum of square deviations: 7719845907.0787735
[2026-01-09 22:38:56] 2026-01-10 03:38:14,406 | INFO     | sum of deviations: 48302429962.7431
[2026-01-09 22:38:56] 2026-01-10 03:38:14,406 | INFO     | mean x: 1768007333.7020547
[2026-01-09 22:38:56] 2026-01-10 03:38:14,406 | INFO     | mean y: 2489971.928082192
[2026-01-09 22:38:56] 2026-01-10 03:38:14,406 | INFO     | intersect: -11059783995.412683
[2026-01-09 22:38:56] 2026-01-10 03:38:14,407 | INFO     | chi2: 2.445952832459111
[2026-01-09 22:38:56] 2026-01-10 03:38:14,407 | INFO     | sum of square deviations: 7330033336.871093
[2026-01-09 22:38:56] 2026-01-10 03:38:14,409 | INFO     | sum of deviations: 66878434451.48087
[2026-01-09 22:38:56] 2026-01-10 03:38:14,409 | INFO     | mean x: 1768007181.205575
[2026-01-09 22:38:56] 2026-01-10 03:38:14,409 | INFO     | mean y: 2497132.4494773517
[2026-01-09 22:38:56] 2026-01-10 03:38:14,410 | INFO     | intersect: -16128609909.483465
[2026-01-09 22:38:56] 2026-01-10 03:38:14,410 | INFO     | chi2: 1.6630748327311704
[2026-01-09 22:38:56] 2026-01-10 03:38:14,410 | INFO     | current chi2=1.6630748327311704 (change=32.007076724404826 %)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,411 | INFO     | sum of square deviations: 6953552102.570919
[2026-01-09 22:38:56] 2026-01-10 03:38:14,413 | INFO     | sum of deviations: 65591366858.86879
[2026-01-09 22:38:56] 2026-01-10 03:38:14,413 | INFO     | mean x: 1768007028.7056737
[2026-01-09 22:38:56] 2026-01-10 03:38:14,413 | INFO     | mean y: 2496610.769503546
[2026-01-09 22:38:56] 2026-01-10 03:38:14,413 | INFO     | intersect: -16674734812.57981
[2026-01-09 22:38:56] 2026-01-10 03:38:14,413 | INFO     | chi2: 1.663215486224966
[2026-01-09 22:38:56] 2026-01-10 03:38:14,414 | INFO     | current chi2=1.663215486224966 (change=-0.008457436251654628 %)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,414 | INFO     | right removable region: 281
[2026-01-09 22:38:56] 2026-01-10 03:38:14,414 | INFO     | sum of square deviations: 7329997346.871093
[2026-01-09 22:38:56] 2026-01-10 03:38:14,416 | INFO     | sum of deviations: -2533228246.696863
[2026-01-09 22:38:56] 2026-01-10 03:38:14,416 | INFO     | mean x: 1768007486.205575
[2026-01-09 22:38:56] 2026-01-10 03:38:14,416 | INFO     | mean y: 2509734.43554007
[2026-01-09 22:38:56] 2026-01-10 03:38:14,416 | INFO     | intersect: 613528578.3017386
[2026-01-09 22:38:56] 2026-01-10 03:38:14,417 | INFO     | chi2: 0.872399281075095
[2026-01-09 22:38:56] 2026-01-10 03:38:14,417 | INFO     | current chi2=0.872399281075095 (change=64.3329474919595 %)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,417 | INFO     | sum of square deviations: 6953497874.156049
[2026-01-09 22:38:56] 2026-01-10 03:38:14,420 | INFO     | sum of deviations: -12875141636.638296
[2026-01-09 22:38:56] 2026-01-10 03:38:14,420 | INFO     | mean x: 1768007638.70922
[2026-01-09 22:38:56] 2026-01-10 03:38:14,420 | INFO     | mean y: 2513923.5531914895
[2026-01-09 22:38:56] 2026-01-10 03:38:14,420 | INFO     | intersect: 3276168302.257153
[2026-01-09 22:38:56] 2026-01-10 03:38:14,420 | INFO     | chi2: 0.8288533326993431
[2026-01-09 22:38:56] 2026-01-10 03:38:14,420 | INFO     | current chi2=0.8288533326993431 (change=4.991515848349661 %)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,421 | INFO     | left removable region: 20
[2026-01-09 22:38:56] 2026-01-10 03:38:14,421 | INFO     | sum of square deviations: 5512836135.409986
[2026-01-09 22:38:56] 2026-01-10 03:38:14,423 | INFO     | sum of deviations: 6648272139.459769
[2026-01-09 22:38:56] 2026-01-10 03:38:14,423 | INFO     | mean x: 1768007608.210728
[2026-01-09 22:38:56] 2026-01-10 03:38:14,423 | INFO     | mean y: 2521222.264367816
[2026-01-09 22:38:56] 2026-01-10 03:38:14,423 | INFO     | intersect: -2129629169.1686134
[2026-01-09 22:38:56] 2026-01-10 03:38:14,424 | INFO     | chi2: 0.016728337789125868
[2026-01-09 22:38:56] 2026-01-10 03:38:14,424 | INFO     | current memory leak: 1.21 B/s (using 261 data points, chi2=0.02)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | could have reported an average CPU frequency of 2701 MHz (13 samples)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | ..............................
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | . Timing measurements:
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | . get job = 0 s
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | . initial setup = 3 s
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | . payload setup = 28 s
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | . stage-in = 0 s
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | . payload execution = 17809 s
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | . stage-out = 7 s
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | . log creation = 1 s
[2026-01-09 22:38:56] 2026-01-10 03:38:14,425 | INFO     | ..............................
[2026-01-09 22:38:56] 2026-01-10 03:38:14,726 | INFO     | 
[2026-01-09 22:38:56] 2026-01-10 03:38:14,726 | INFO     | job summary report
[2026-01-09 22:38:56] 2026-01-10 03:38:14,726 | INFO     | --------------------------------------------------
[2026-01-09 22:38:56] 2026-01-10 03:38:14,726 | INFO     | PanDA job id: 6962016330
[2026-01-09 22:38:56] 2026-01-10 03:38:14,726 | INFO     | task id: 47898826
[2026-01-09 22:38:56] 2026-01-10 03:38:14,726 | INFO     | errors: (none)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,726 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | pilot state: finished 
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | transexitcode: 0
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | exeerrorcode: 0
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | exeerrordiag: 
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | exitcode: 0
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | exitmsg: OK
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | cpuconsumptiontime: 59327 s
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | nevents: 400
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | neventsw: 0
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | pid: 654888
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | pgrp: 654888
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | corecount: 8
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | event service: False
[2026-01-09 22:38:56] 2026-01-10 03:38:14,727 | INFO     | sizes: {0: 2283793, 1: 2283992, 2: 2283992, 13: 2284020, 19: 2284338, 24: 2284366, 17841: 2316672, 17842: 2316671, 17851: 2325725, 17854: 2325781, 17884: 2325975}
[2026-01-09 22:38:56] 2026-01-10 03:38:14,728 | INFO     | --------------------------------------------------
[2026-01-09 22:38:56] 2026-01-10 03:38:14,728 | INFO     | 
[2026-01-09 22:38:56] 2026-01-10 03:38:14,728 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 22:38:56] 2026-01-10 03:38:14,786 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,786 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,786 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,786 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,786 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,786 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,786 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,786 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,787 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:38:56] 2026-01-10 03:38:14,788 | INFO     | job 6962016330 has completed (purged errors)
[2026-01-09 22:38:56] 2026-01-10 03:38:14,788 | INFO     | overall cleanup function is called
[2026-01-09 22:38:56] 2026-01-10 03:38:15,818 | INFO     | --- collectZombieJob: --- 10, [654888]
[2026-01-09 22:38:56] 2026-01-10 03:38:15,826 | INFO     | zombie collector waiting for pid 654888
[2026-01-09 22:38:56] 2026-01-10 03:38:15,826 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:38:56] 2026-01-10 03:38:15,826 | INFO     | collected zombie processes
[2026-01-09 22:38:56] 2026-01-10 03:38:15,826 | INFO     | will attempt to kill all subprocesses of pid=654888
[2026-01-09 22:38:56] 2026-01-10 03:38:16,862 | INFO     | process IDs to be killed: [654888] (in reverse order)
[2026-01-09 22:38:56] 2026-01-10 03:38:17,143 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:38:56] 2026-01-10 03:38:17,144 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:38:56] 2026-01-10 03:38:17,182 | INFO     | did not find any defunct processes belonging to 654888
[2026-01-09 22:38:56] 2026-01-10 03:38:17,279 | INFO     | did not find any defunct processes belonging to 654888
[2026-01-09 22:38:56] 2026-01-10 03:38:17,279 | INFO     | ready for new job
[2026-01-09 22:38:56] 2026-01-10 03:38:17,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:38:56] 2026-01-10 03:38:17,282 | INFO     | ***************************************
[2026-01-09 22:38:56] 2026-01-10 03:38:17,282 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:38:56] 2026-01-10 03:38:17,282 | INFO     | ***************************************
[2026-01-09 22:38:56] 2026-01-10 03:38:17,282 | INFO     | 
[2026-01-09 22:38:56] 2026-01-10 03:38:17,328 | INFO     | architecture information:
[2026-01-09 22:38:56] 2026-01-10 03:38:17,337 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:38:56] 2026-01-10 03:38:17,400 | INFO     | cat /etc/os-release:
[2026-01-09 22:38:56] NAME="CentOS Linux"
[2026-01-09 22:38:56] VERSION="7 (Core)"
[2026-01-09 22:38:56] ID="centos"
[2026-01-09 22:38:56] ID_LIKE="rhel fedora"
[2026-01-09 22:38:56] VERSION_ID="7"
[2026-01-09 22:38:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:38:56] ANSI_COLOR="0;31"
[2026-01-09 22:38:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:38:56] HOME_URL="https://www.centos.org/"
[2026-01-09 22:38:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:38:56] 
[2026-01-09 22:38:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:38:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:38:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:38:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:38:56] 
[2026-01-09 22:38:56] 2026-01-10 03:38:17,400 | INFO     | ***************************************
[2026-01-09 22:38:56] 2026-01-10 03:38:17,904 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 22:38:56] 2026-01-10 03:38:18,058 | INFO     | sufficient remaining disk space (128670760960 B)
[2026-01-09 22:38:56] 2026-01-10 03:38:18,058 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:38:56] 2026-01-10 03:38:18,059 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:38:56] 2026-01-10 03:38:18,059 | INFO     | update_server=False
[2026-01-09 22:38:56] 2026-01-10 03:38:18,059 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:38:56] 2026-01-10 03:38:18,059 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:38:56] 2026-01-10 03:38:18,059 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:38:56] 2026-01-10 03:38:18,182 | INFO     | all job control threads have been joined
[2026-01-09 22:38:56] 2026-01-10 03:38:18,205 | INFO     | all payload control threads have been joined
[2026-01-09 22:38:56] 2026-01-10 03:38:18,485 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 22:38:56] 2026-01-10 03:38:18,485 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 22:38:56] 2026-01-10 03:38:18,485 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:38:56] 2026-01-10 03:38:18,485 | INFO     | will abort loop
[2026-01-09 22:38:56] 2026-01-10 03:38:18,546 | INFO     | all data control threads have been joined
[2026-01-09 22:38:56] 2026-01-10 03:38:19,079 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:19,188 | INFO     | [job] control thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:19,211 | INFO     | [payload] control thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:19,236 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:19,262 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:19,342 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:19,346 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:19,491 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:19,553 | INFO     | [data] control thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:19,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:38:56] 2026-01-10 03:38:19,745 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:19,995 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:20,066 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:20,128 | INFO     | [job] validate thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:20,330 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:20,663 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:22,069 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:38:56] 2026-01-10 03:38:49,142 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:38:56] 2026-01-10 03:38:50,232 | INFO     | PID=645558 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 22:38:56] 2026-01-10 03:38:50,232 | INFO     | .. there are 15 such processes running
[2026-01-09 22:38:56] 2026-01-10 03:38:50,233 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:38:56] 2026-01-10 03:38:50,233 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:38:56] 2026-01-10 03:38:50,233 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:38:56] 2026-01-10 03:38:50,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140179843794752)>', '<ExcThread(monitor, started 140179469756160)>']
[2026-01-09 22:38:56] 2026-01-10 03:38:51,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:38:56] 2026-01-10 03:38:51,240 | INFO     | [monitor] control thread has ended
[2026-01-09 22:38:56] 2026-01-10 03:38:55,491 | INFO     | all workflow threads have been joined
[2026-01-09 22:38:56] 2026-01-10 03:38:55,491 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:38:56] 2026-01-10 03:38:55,492 | INFO     | traces error code: 0
[2026-01-09 22:38:56] 2026-01-10 03:38:55,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:38:56] 2026-01-10 03:38:55,723 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:38:56] 2026-01-10 03:38:55,738 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:38:56] 2026-01-10 03:38:55,754 [wrapper] pilotpid: 645558
[2026-01-09 22:38:56] 2026-01-10 03:38:55,782 [wrapper] Pilot exit status: 0
[2026-01-09 22:38:56] 2026-01-10 03:38:55,909 [wrapper] pandaids: 6962016330
[2026-01-09 22:38:56] 2026-01-10 03:38:56,328 [wrapper] cleanup supervisor_pilot 1170345 645559
[2026-01-09 22:38:56] 2026-01-10 03:38:56,333 [wrapper] Test setup, not cleaning
[2026-01-09 22:38:56] 2026-01-10 03:38:56,336 [wrapper] apfmon messages muted
[2026-01-09 22:38:56] 2026-01-10 03:38:56,339 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:38:56] 2026-01-10 03:38:56,344 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:38:56]  *** Error codes and diagnostics ***
[2026-01-09 22:38:56]     "exeErrorCode": 0,
[2026-01-09 22:38:56]     "exeErrorDiag": "",
[2026-01-09 22:38:56]     "pilotErrorCode": 0,
[2026-01-09 22:38:56]     "pilotErrorDiag": "",
[2026-01-09 22:38:56]  *** Listing of results directory ***
[2026-01-09 22:38:56] total 442760
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 10:25 pilot3.tar.gz
[2026-01-09 22:38:56] -rwx------. 1 boincer umatlas     36322 Jan  7 10:31 runpilot2-wrapper.sh
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 10:33 queuedata.json
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas       100 Jan  9 17:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:38:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 17:38 run_atlas
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas       105 Jan  9 17:38 job.xml
[2026-01-09 22:38:56] -rw-r--r--. 2 boincer umatlas 223788233 Jan  9 17:38 EVNT.47898824._000412.pool.root.1
[2026-01-09 22:38:56] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:38 start_atlas.sh
[2026-01-09 22:38:56] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 17:38 shared
[2026-01-09 22:38:56] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 17:38 input.tar.gz
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas         0 Jan  9 17:38 boinc_lockfile
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas      2516 Jan  9 17:38 pandaJob.out
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas        57 Jan  9 17:38 setup.sh.local
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas    989375 Jan  9 17:39 agis_schedconf.cvmfs.json
[2026-01-09 22:38:56] drwx------. 5 boincer umatlas      4096 Jan  9 17:39 pilot3
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas      6859 Jan  9 22:30 init_data.xml
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas 220134552 Jan  9 22:36 HITS.47898826._009123.pool.root.1
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas       529 Jan  9 22:36 boinc_task_state.xml
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas      1042 Jan  9 22:37 memory_monitor_summary.json
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas   1516240 Jan  9 22:37 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas    510543 Jan  9 22:37 log.47898826._009123.job.log.tgz.1
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas      7825 Jan  9 22:38 heartbeat.json
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 22:38 boinc_mmap_file
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas        27 Jan  9 22:38 wrapper_checkpoint.txt
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas        95 Jan  9 22:38 pilot_heartbeat.json
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas      5010 Jan  9 22:38 pilotlog.txt
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas   2260685 Jan  9 22:38 log.47898826._009123.job.log.1
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas       357 Jan  9 22:38 output.list
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas       620 Jan  9 22:38 runtime_log
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas   2795520 Jan  9 22:38 result.tar.gz
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas      9353 Jan  9 22:38 runtime_log.err
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas       657 Jan  9 22:38 QN6NDmxgkx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMHiKDmtpL2pn.diag
[2026-01-09 22:38:56] -rw-r--r--. 1 boincer umatlas     21223 Jan  9 22:38 stderr.txt
[2026-01-09 22:38:56] HITS file was successfully produced:
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas 220134552 Jan  9 22:36 shared/HITS.pool.root.1
[2026-01-09 22:38:56]  *** Contents of shared directory: ***
[2026-01-09 22:38:56] total 436856
[2026-01-09 22:38:56] -rw-r--r--. 2 boincer umatlas 223788233 Jan  9 17:38 ATLAS.root_0
[2026-01-09 22:38:56] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:38 start_atlas.sh
[2026-01-09 22:38:56] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 17:38 input.tar.gz
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas 220134552 Jan  9 22:36 HITS.pool.root.1
[2026-01-09 22:38:56] -rw-------. 1 boincer umatlas   2795520 Jan  9 22:38 result.tar.gz
22:38:58 (641446): run_atlas exited; CPU time 59959.294153
22:38:58 (641446): called boinc_finish(0)

</stderr_txt>
]]>

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