Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
13:37:46 (533583): wrapper (7.7.26015): starting
13:37:46 (533583): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 13:37:46] Arguments: --nthreads 12
[2026-01-10 13:37:46] Threads: 12
[2026-01-10 13:37:46] Checking for CVMFS
[2026-01-10 13:37:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 13:37:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 13:37:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 13:37:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 13:37:47] 2.12.7.0 5106 512 64164 154988 0 129 3227495 4194305 1643 130560 10 1162045 99.972 20417 198 http://s1fnal-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-01-10 13:37:47] CVMFS is ok
[2026-01-10 13:37:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 13:37:47] Checking for apptainer binary...
[2026-01-10 13:37:47] apptainer is not installed, using version from CVMFS
[2026-01-10 13:37:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 13:37:47] Trebeth
[2026-01-10 13:37:47] apptainer works
[2026-01-10 13:37:47] Set ATHENA_PROC_NUMBER=12
[2026-01-10 13:37:47] Set ATHENA_CORE_NUMBER=12
[2026-01-10 13:37:47] Starting ATLAS job with PandaID=6962014699
[2026-01-10 13:37:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 15:08:12]  *** The last 200 lines of the pilot log: ***
[2026-01-10 15:08:12]  protocol_id=None
[2026-01-10 15:08:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 15:08:12]  replicas=None
[2026-01-10 15:08:12]  scope=mc23_13p6TeV
[2026-01-10 15:08:12]  status=None
[2026-01-10 15:08:12]  status_code=0
[2026-01-10 15:08:12]  storage_token=
[2026-01-10 15:08:12]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6962014699/log.47898826._008551.job.log.tgz.1
[2026-01-10 15:08:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/c9/log.47898826._008551.job.log.tgz.1
[2026-01-10 15:08:12]  workdir=None
[2026-01-10 15:08:12] ]
[2026-01-10 15:08:12] 2026-01-10 20:07:15,308 | INFO     | transferring file log.47898826._008551.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6962014699/log.47898826._008551.job.log.tgz.1 to /var/lib/boinc
[2026-01-10 15:08:12] 2026-01-10 20:07:15,308 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6962014699/log.47898826._008551.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.478988
[2026-01-10 15:08:12] 2026-01-10 20:07:15,320 | INFO     | adding to output.list: log.47898826._008551.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/c9/log.47898826._008551.job.log.tg
[2026-01-10 15:08:12] 2026-01-10 20:07:15,321 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 15:08:12] 2026-01-10 20:07:15,321 | INFO     | summary of transferred files:
[2026-01-10 15:08:12] 2026-01-10 20:07:15,321 | INFO     |  -- lfn=log.47898826._008551.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 15:08:12] 2026-01-10 20:07:15,321 | INFO     | stage-out finished correctly
[2026-01-10 15:08:12] 2026-01-10 20:07:15,889 | WARNING  | process 544534 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 15:08:12] 2026-01-10 20:07:15,889 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6962014699/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 15:08:12] 2026-01-10 20:07:16,072 | INFO     | number of running child processes to parent process 544534: 1
[2026-01-10 15:08:12] 2026-01-10 20:07:16,072 | INFO     | maximum number of monitored processes: 6
[2026-01-10 15:08:12] 2026-01-10 20:07:16,268 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 15:08:12] 2026-01-10 20:07:16,306 | INFO     | time since job start (5360s) is within the limit (174528.0s)
[2026-01-10 15:08:12] 2026-01-10 20:07:16,575 | INFO     | job 6962014699 has state=finished
[2026-01-10 15:08:12] 2026-01-10 20:07:16,575 | INFO     | preparing for final server update for job 6962014699 in state='finished'
[2026-01-10 15:08:12] 2026-01-10 20:07:16,575 | INFO     | this job has now completed (state=finished)
[2026-01-10 15:08:12] 2026-01-10 20:07:16,575 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 15:08:12] 2026-01-10 20:07:16,575 | INFO     | log transfer has been attempted: DONE
[2026-01-10 15:08:12] 2026-01-10 20:07:16,576 | INFO     | job 6962014699 has finished - writing final server update
[2026-01-10 15:08:12] 2026-01-10 20:07:16,576 | INFO     | total number of processed events: 400 (read)
[2026-01-10 15:08:12] 2026-01-10 20:07:16,577 | INFO     | executing command: lscpu
[2026-01-10 15:08:12] 2026-01-10 20:07:16,633 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 15:08:12] 2026-01-10 20:07:18,319 | INFO     | time since job start (5362s) is within the limit (174528.0s)
[2026-01-10 15:08:12] 2026-01-10 20:07:18,574 | INFO     | monitor loop #400: job 0:6962014699 is in state 'finished'
[2026-01-10 15:08:12] 2026-01-10 20:07:18,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 15:08:12] 2026-01-10 20:07:19,496 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 15:08:12] 2026-01-10 20:07:19,505 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3070.7689464285722
[2026-01-10 15:08:12] 2026-01-10 20:07:19,514 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6962014699/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 15:08:12] 2026-01-10 20:07:19,514 | INFO     | extracted standard info from prmon json
[2026-01-10 15:08:12] 2026-01-10 20:07:19,515 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 15:08:12] 2026-01-10 20:07:19,515 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 15:08:12] 2026-01-10 20:07:19,515 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 15:08:12] 2026-01-10 20:07:19,515 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 15:08:12] 2026-01-10 20:07:19,517 | INFO     | fitting pss+swap vs Time
[2026-01-10 15:08:12] 2026-01-10 20:07:19,517 | INFO     | sum of square deviations: 164765880.0
[2026-01-10 15:08:12] 2026-01-10 20:07:19,518 | INFO     | sum of deviations: -11299982393.0
[2026-01-10 15:08:12] 2026-01-10 20:07:19,518 | INFO     | mean x: 1768073043.0
[2026-01-10 15:08:12] 2026-01-10 20:07:19,518 | INFO     | mean y: 2777345.2716049384
[2026-01-10 15:08:12] 2026-01-10 20:07:19,518 | INFO     | intersect: 121260857327.83797
[2026-01-10 15:08:12] 2026-01-10 20:07:19,518 | INFO     | chi2: 0.16258040836039364
[2026-01-10 15:08:12] 2026-01-10 20:07:19,518 | INFO     | current memory leak: -68.58 B/s (using 81 data points, chi2=0.16)
[2026-01-10 15:08:12] 2026-01-10 20:07:19,519 | INFO     | could have reported an average CPU frequency of 2840 MHz (6 samples)
[2026-01-10 15:08:12] 2026-01-10 20:07:19,519 | INFO     | ..............................
[2026-01-10 15:08:12] 2026-01-10 20:07:19,519 | INFO     | . Timing measurements:
[2026-01-10 15:08:12] 2026-01-10 20:07:19,519 | INFO     | . get job = 0 s
[2026-01-10 15:08:12] 2026-01-10 20:07:19,519 | INFO     | . initial setup = 2 s
[2026-01-10 15:08:12] 2026-01-10 20:07:19,519 | INFO     | . payload setup = 4 s
[2026-01-10 15:08:12] 2026-01-10 20:07:19,519 | INFO     | . stage-in = 0 s
[2026-01-10 15:08:12] 2026-01-10 20:07:19,519 | INFO     | . payload execution = 5335 s
[2026-01-10 15:08:12] 2026-01-10 20:07:19,519 | INFO     | . stage-out = 0 s
[2026-01-10 15:08:12] 2026-01-10 20:07:19,519 | INFO     | . log creation = 0 s
[2026-01-10 15:08:12] 2026-01-10 20:07:19,520 | INFO     | ..............................
[2026-01-10 15:08:12] 2026-01-10 20:07:19,595 | INFO     | 
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | job summary report
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | --------------------------------------------------
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | PanDA job id: 6962014699
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | task id: 47898826
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | errors: (none)
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | pilot state: finished 
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | transexitcode: 0
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | exeerrorcode: 0
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | exeerrordiag: 
[2026-01-10 15:08:12] 2026-01-10 20:07:19,596 | INFO     | exitcode: 0
[2026-01-10 15:08:12] 2026-01-10 20:07:19,597 | INFO     | exitmsg: OK
[2026-01-10 15:08:12] 2026-01-10 20:07:19,597 | INFO     | cpuconsumptiontime: 57747 s
[2026-01-10 15:08:12] 2026-01-10 20:07:19,597 | INFO     | nevents: 400
[2026-01-10 15:08:12] 2026-01-10 20:07:19,597 | INFO     | neventsw: 0
[2026-01-10 15:08:12] 2026-01-10 20:07:19,597 | INFO     | pid: 544534
[2026-01-10 15:08:12] 2026-01-10 20:07:19,597 | INFO     | pgrp: 544534
[2026-01-10 15:08:12] 2026-01-10 20:07:19,597 | INFO     | corecount: 12
[2026-01-10 15:08:12] 2026-01-10 20:07:19,597 | INFO     | event service: False
[2026-01-10 15:08:12] 2026-01-10 20:07:19,597 | INFO     | sizes: {0: 2283971, 4: 2284233, 11: 2284261, 5343: 2310826, 5344: 2310825, 5345: 2319893, 5346: 2320077, 5349: 2320271}
[2026-01-10 15:08:12] 2026-01-10 20:07:19,597 | INFO     | --------------------------------------------------
[2026-01-10 15:08:12] 2026-01-10 20:07:19,598 | INFO     | 
[2026-01-10 15:08:12] 2026-01-10 20:07:19,598 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-01-10 15:08:12] 2026-01-10 20:07:19,614 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,614 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,614 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,614 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,615 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,615 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,616 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 15:08:12] 2026-01-10 20:07:19,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,616 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 15:08:12] 2026-01-10 20:07:19,616 | INFO     | job 6962014699 has completed (purged errors)
[2026-01-10 15:08:12] 2026-01-10 20:07:19,616 | INFO     | overall cleanup function is called
[2026-01-10 15:08:12] 2026-01-10 20:07:20,622 | INFO     | --- collectZombieJob: --- 10, [544534]
[2026-01-10 15:08:12] 2026-01-10 20:07:20,623 | INFO     | zombie collector waiting for pid 544534
[2026-01-10 15:08:12] 2026-01-10 20:07:20,623 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 15:08:12] 2026-01-10 20:07:20,623 | INFO     | collected zombie processes
[2026-01-10 15:08:12] 2026-01-10 20:07:20,623 | INFO     | will attempt to kill all subprocesses of pid=544534
[2026-01-10 15:08:12] 2026-01-10 20:07:20,820 | INFO     | process IDs to be killed: [544534] (in reverse order)
[2026-01-10 15:08:12] 2026-01-10 20:07:20,890 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 15:08:12] 2026-01-10 20:07:20,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 15:08:12] 2026-01-10 20:07:20,896 | INFO     | did not find any defunct processes belonging to 544534
[2026-01-10 15:08:12] 2026-01-10 20:07:20,901 | INFO     | did not find any defunct processes belonging to 544534
[2026-01-10 15:08:12] 2026-01-10 20:07:20,901 | INFO     | ready for new job
[2026-01-10 15:08:12] 2026-01-10 20:07:20,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 15:08:12] 2026-01-10 20:07:20,903 | INFO     | ***************************************
[2026-01-10 15:08:12] 2026-01-10 20:07:20,903 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 15:08:12] 2026-01-10 20:07:20,903 | INFO     | ***************************************
[2026-01-10 15:08:12] 2026-01-10 20:07:20,904 | INFO     | 
[2026-01-10 15:08:12] 2026-01-10 20:07:20,925 | INFO     | architecture information:
[2026-01-10 15:08:12] 2026-01-10 20:07:20,926 | INFO     | executing command: cat /etc/os-release
[2026-01-10 15:08:12] 2026-01-10 20:07:20,938 | INFO     | cat /etc/os-release:
[2026-01-10 15:08:12] NAME="CentOS Linux"
[2026-01-10 15:08:12] VERSION="7 (Core)"
[2026-01-10 15:08:12] ID="centos"
[2026-01-10 15:08:12] ID_LIKE="rhel fedora"
[2026-01-10 15:08:12] VERSION_ID="7"
[2026-01-10 15:08:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 15:08:12] ANSI_COLOR="0;31"
[2026-01-10 15:08:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 15:08:12] HOME_URL="https://www.centos.org/"
[2026-01-10 15:08:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 15:08:12] 
[2026-01-10 15:08:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 15:08:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 15:08:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 15:08:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 15:08:12] 
[2026-01-10 15:08:12] 2026-01-10 20:07:20,939 | INFO     | ***************************************
[2026-01-10 15:08:12] 2026-01-10 20:07:21,441 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-01-10 15:08:12] 2026-01-10 20:07:21,454 | INFO     | sufficient remaining disk space (389412814848 B)
[2026-01-10 15:08:12] 2026-01-10 20:07:21,455 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 15:08:12] 2026-01-10 20:07:21,455 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 15:08:12] 2026-01-10 20:07:21,455 | INFO     | update_server=False
[2026-01-10 15:08:12] 2026-01-10 20:07:21,455 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 15:08:12] 2026-01-10 20:07:21,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 15:08:12] 2026-01-10 20:07:21,456 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 15:08:12] 2026-01-10 20:07:21,921 | INFO     | all job control threads have been joined
[2026-01-10 15:08:12] 2026-01-10 20:07:22,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 15:08:12] 2026-01-10 20:07:22,087 | INFO     | aborting loop
[2026-01-10 15:08:12] 2026-01-10 20:07:22,353 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 15:08:12] 2026-01-10 20:07:22,382 | INFO     | all data control threads have been joined
[2026-01-10 15:08:12] 2026-01-10 20:07:22,458 | INFO     | [job] retrieve thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:22,459 | INFO     | [job] queue monitor thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:22,470 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:22,778 | INFO     | all payload control threads have been joined
[2026-01-10 15:08:12] 2026-01-10 20:07:22,926 | INFO     | [job] control thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:22,946 | INFO     | [payload] failed_post thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:23,090 | INFO     | [job] job monitor thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:23,202 | INFO     | [job] validate thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:23,386 | INFO     | [data] control thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:23,390 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:23,458 | INFO     | [payload] validate_post thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:23,459 | INFO     | [data] copytool_out thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:23,514 | INFO     | [data] copytool_in thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:23,784 | INFO     | [payload] control thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:23,810 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:26,359 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:31,578 | INFO     | job.realtimelogging is not enabled
[2026-01-10 15:08:12] 2026-01-10 20:07:32,584 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 15:08:12] 2026-01-10 20:07:51,679 | INFO     | PID=537587 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 15:08:12] 2026-01-10 20:07:51,680 | INFO     | .. there are 3 such processes running
[2026-01-10 15:08:12] 2026-01-10 20:07:51,680 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 15:08:12] 2026-01-10 20:07:51,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 15:08:12] 2026-01-10 20:07:51,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 15:08:12] 2026-01-10 20:07:53,089 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-01-10 15:08:12] 2026-01-10 20:08:04,810 | INFO     | [monitor] cgroup control has ended
[2026-01-10 15:08:12] 2026-01-10 20:08:06,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140055301388096)>', '<ExcThread(monitor, started 140054714377984)>']
[2026-01-10 15:08:12] 2026-01-10 20:08:07,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 15:08:12] 2026-01-10 20:08:07,742 | INFO     | [monitor] control thread has ended
[2026-01-10 15:08:12] 2026-01-10 20:08:11,850 | INFO     | all workflow threads have been joined
[2026-01-10 15:08:12] 2026-01-10 20:08:11,851 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 15:08:12] 2026-01-10 20:08:11,851 | INFO     | traces error code: 0
[2026-01-10 15:08:12] 2026-01-10 20:08:11,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 15:08:12] 2026-01-10 20:08:11,950 [wrapper] ==== pilot stdout END ====
[2026-01-10 15:08:12] 2026-01-10 20:08:11,952 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 15:08:12] 2026-01-10 20:08:11,954 [wrapper] pilotpid: 537587
[2026-01-10 15:08:12] 2026-01-10 20:08:11,956 [wrapper] Pilot exit status: 0
[2026-01-10 15:08:12] 2026-01-10 20:08:11,963 [wrapper] pandaids: 6962014699
[2026-01-10 15:08:12] 2026-01-10 20:08:12,008 [wrapper] cleanup supervisor_pilot  607772 537588
[2026-01-10 15:08:12] 2026-01-10 20:08:12,011 [wrapper] Test setup, not cleaning
[2026-01-10 15:08:12] 2026-01-10 20:08:12,013 [wrapper] apfmon messages muted
[2026-01-10 15:08:12] 2026-01-10 20:08:12,015 [wrapper] ==== wrapper stdout END ====
[2026-01-10 15:08:12] 2026-01-10 20:08:12,016 [wrapper] ==== wrapper stderr END ====
[2026-01-10 15:08:12]  *** Error codes and diagnostics ***
[2026-01-10 15:08:12]     "exeErrorCode": 0,
[2026-01-10 15:08:12]     "exeErrorDiag": "",
[2026-01-10 15:08:12]     "pilotErrorCode": 0,
[2026-01-10 15:08:12]     "pilotErrorDiag": "",
[2026-01-10 15:08:12]  *** Listing of results directory ***
[2026-01-10 15:08:12] total 437200
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc    579449 Jan  7 10:25 pilot3.tar.gz
[2026-01-10 15:08:12] -rwx------ 1 boinc boinc     36322 Jan  7 10:31 runpilot2-wrapper.sh
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc      5112 Jan  7 10:31 queuedata.json
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc       100 Jan 10 13:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 15:08:12] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 13:37 run_atlas
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc       105 Jan 10 13:37 job.xml
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc      7579 Jan 10 13:37 init_data.xml
[2026-01-10 15:08:12] -rw-r--r-- 2 boinc boinc 226769005 Jan 10 13:37 EVNT.47898824._000359.pool.root.1
[2026-01-10 15:08:12] -rw-r--r-- 2 boinc boinc     15847 Jan 10 13:37 start_atlas.sh
[2026-01-10 15:08:12] drwxrwx--x 2 boinc boinc      4096 Jan 10 13:37 shared
[2026-01-10 15:08:12] -rw-r--r-- 2 boinc boinc    592391 Jan 10 13:37 input.tar.gz
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc         0 Jan 10 13:37 boinc_lockfile
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc      2516 Jan 10 13:37 pandaJob.out
[2026-01-10 15:08:12] -rw------- 1 boinc boinc        50 Jan 10 13:37 setup.sh.local
[2026-01-10 15:08:12] -rw------- 1 boinc boinc    989548 Jan 10 13:37 agis_schedconf.cvmfs.json
[2026-01-10 15:08:12] -rw------- 1 boinc boinc   1516240 Jan 10 13:37 agis_ddmendpoints.agis.ALL.json
[2026-01-10 15:08:12] drwx------ 5 boinc boinc      4096 Jan 10 13:37 pilot3
[2026-01-10 15:08:12] -rw------- 1 boinc boinc 214609412 Jan 10 15:06 HITS.47898826._008551.pool.root.1
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc       529 Jan 10 15:06 boinc_task_state.xml
[2026-01-10 15:08:12] -rw------- 1 boinc boinc      1023 Jan 10 15:07 memory_monitor_summary.json
[2026-01-10 15:08:12] -rw------- 1 boinc boinc        95 Jan 10 15:07 pilot_heartbeat.json
[2026-01-10 15:08:12] -rw------- 1 boinc boinc    404963 Jan 10 15:07 log.47898826._008551.job.log.tgz.1
[2026-01-10 15:08:12] -rw------- 1 boinc boinc      7777 Jan 10 15:07 heartbeat.json
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc      8192 Jan 10 15:08 boinc_mmap_file
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc        27 Jan 10 15:08 wrapper_checkpoint.txt
[2026-01-10 15:08:12] -rw------- 1 boinc boinc      4902 Jan 10 15:08 pilotlog.txt
[2026-01-10 15:08:12] -rw------- 1 boinc boinc    792965 Jan 10 15:08 log.47898826._008551.job.log.1
[2026-01-10 15:08:12] -rw------- 1 boinc boinc       357 Jan 10 15:08 output.list
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc       620 Jan 10 15:08 runtime_log
[2026-01-10 15:08:12] -rw------- 1 boinc boinc   1218560 Jan 10 15:08 result.tar.gz
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc      9404 Jan 10 15:08 runtime_log.err
[2026-01-10 15:08:12] -rw------- 1 boinc boinc       652 Jan 10 15:08 f2iKDmBgkx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm37cKDmSMLgBn.diag
[2026-01-10 15:08:12] -rw-r--r-- 1 boinc boinc     21559 Jan 10 15:08 stderr.txt
[2026-01-10 15:08:12] HITS file was successfully produced:
[2026-01-10 15:08:12] -rw------- 1 boinc boinc 214609412 Jan 10 15:06 shared/HITS.pool.root.1
[2026-01-10 15:08:12]  *** Contents of shared directory: ***
[2026-01-10 15:08:12] total 432832
[2026-01-10 15:08:12] -rw-r--r-- 2 boinc boinc 226769005 Jan 10 13:37 ATLAS.root_0
[2026-01-10 15:08:12] -rw-r--r-- 2 boinc boinc     15847 Jan 10 13:37 start_atlas.sh
[2026-01-10 15:08:12] -rw-r--r-- 2 boinc boinc    592391 Jan 10 13:37 input.tar.gz
[2026-01-10 15:08:12] -rw------- 1 boinc boinc 214609412 Jan 10 15:06 HITS.pool.root.1
[2026-01-10 15:08:12] -rw------- 1 boinc boinc   1218560 Jan 10 15:08 result.tar.gz
15:08:13 (533583): run_atlas exited; CPU time 57863.646014
15:08:13 (533583): called boinc_finish(0)

</stderr_txt>
]]>

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