Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:34:36 (848478): wrapper (7.7.26015): starting
16:34:36 (848478): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 16:34:36] Arguments: --nthreads 12
[2026-01-10 16:34:36] Threads: 12
[2026-01-10 16:34:36] Checking for CVMFS
[2026-01-10 16:34:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 16:34:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 16:34:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 16:34:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 16:34:36] 2.13.3.0 328575 617 64620 154994 2 97 3907819 6144001 1038 130560 3 1557436 99.948 150003 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-10 16:34:36] CVMFS is ok
[2026-01-10 16:34:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 16:34:36] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-10 16:34:36] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-10 16:34:36] Further information can be found at the LHC@home message board.
[2026-01-10 16:34:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 16:34:36] Checking for apptainer binary...
[2026-01-10 16:34:36] apptainer is not installed, using version from CVMFS
[2026-01-10 16:34:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 16:34:38] XeonFire
[2026-01-10 16:34:38] apptainer works
[2026-01-10 16:34:38] Set ATHENA_PROC_NUMBER=12
[2026-01-10 16:34:38] Set ATHENA_CORE_NUMBER=12
[2026-01-10 16:34:38] Starting ATLAS job with PandaID=6962314458
[2026-01-10 16:34:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 17:52:32]  *** The last 200 lines of the pilot log: ***
[2026-01-10 17:52:32] 2026-01-10 23:51:41,146 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 17:52:32] 2026-01-10 23:51:41,723 | INFO     | time since job start (4598s) is within the limit (174528.0s)
[2026-01-10 17:52:32] 2026-01-10 23:51:43,428 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 17:52:32] 2026-01-10 23:51:43,649 | INFO     | monitor loop #340: job 0:6962314458 is in state 'finished'
[2026-01-10 17:52:32] 2026-01-10 23:51:43,649 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 17:52:32] 2026-01-10 23:51:43,729 | INFO     | time since job start (4600s) is within the limit (174528.0s)
[2026-01-10 17:52:32] 2026-01-10 23:51:44,244 | INFO     | job 6962314458 has state=finished
[2026-01-10 17:52:32] 2026-01-10 23:51:44,244 | INFO     | preparing for final server update for job 6962314458 in state='finished'
[2026-01-10 17:52:32] 2026-01-10 23:51:44,245 | INFO     | this job has now completed (state=finished)
[2026-01-10 17:52:32] 2026-01-10 23:51:44,245 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 17:52:32] 2026-01-10 23:51:44,245 | INFO     | log transfer has been attempted: DONE
[2026-01-10 17:52:32] 2026-01-10 23:51:44,245 | INFO     | job 6962314458 has finished - writing final server update
[2026-01-10 17:52:32] 2026-01-10 23:51:44,246 | INFO     | total number of processed events: 400 (read)
[2026-01-10 17:52:32] 2026-01-10 23:51:44,250 | INFO     | executing command: lscpu
[2026-01-10 17:52:32] 2026-01-10 23:51:44,298 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 17:52:32] 2026-01-10 23:51:45,735 | INFO     | time since job start (4602s) is within the limit (174528.0s)
[2026-01-10 17:52:32] 2026-01-10 23:51:46,153 | INFO     | monitor loop #341: job 0:6962314458 is in state 'finished'
[2026-01-10 17:52:32] 2026-01-10 23:51:46,153 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 17:52:32] 2026-01-10 23:51:47,740 | INFO     | time since job start (4604s) is within the limit (174528.0s)
[2026-01-10 17:52:32] 2026-01-10 23:51:48,656 | INFO     | monitor loop #342: job 0:6962314458 is in state 'finished'
[2026-01-10 17:52:32] 2026-01-10 23:51:48,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 17:52:32] 2026-01-10 23:51:49,745 | INFO     | time since job start (4606s) is within the limit (174528.0s)
[2026-01-10 17:52:32] 2026-01-10 23:51:51,159 | INFO     | monitor loop #343: job 0:6962314458 is in state 'finished'
[2026-01-10 17:52:32] 2026-01-10 23:51:51,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 17:52:32] 2026-01-10 23:51:51,751 | INFO     | time since job start (4608s) is within the limit (174528.0s)
[2026-01-10 17:52:32] 2026-01-10 23:51:53,662 | INFO     | monitor loop #344: job 0:6962314458 is in state 'finished'
[2026-01-10 17:52:32] 2026-01-10 23:51:53,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 17:52:32] 2026-01-10 23:51:53,756 | INFO     | time since job start (4610s) is within the limit (174528.0s)
[2026-01-10 17:52:32] 2026-01-10 23:51:55,762 | INFO     | time since job start (4612s) is within the limit (174528.0s)
[2026-01-10 17:52:32] 2026-01-10 23:51:56,165 | INFO     | monitor loop #345: job 0:6962314458 is in state 'finished'
[2026-01-10 17:52:32] 2026-01-10 23:51:56,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 17:52:32] 2026-01-10 23:51:57,218 | INFO     | PID=852523 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 17:52:32] 2026-01-10 23:51:57,219 | INFO     | .. there are 2 such processes running
[2026-01-10 17:52:32] 2026-01-10 23:51:58,219 | INFO     | time since job start (4615s) is within the limit (174528.0s)
[2026-01-10 17:52:32] 2026-01-10 23:51:58,669 | INFO     | monitor loop #346: job 0:6962314458 is in state 'finished'
[2026-01-10 17:52:32] 2026-01-10 23:51:58,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 17:52:32] 2026-01-10 23:51:58,709 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 17:52:32] 2026-01-10 23:51:58,725 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2016.5299318181817
[2026-01-10 17:52:32] 2026-01-10 23:51:58,743 | INFO     | using path: /var/lib/boinc-client/slots/26/PanDA_Pilot-6962314458/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 17:52:32] 2026-01-10 23:51:58,744 | INFO     | extracted standard info from prmon json
[2026-01-10 17:52:32] 2026-01-10 23:51:58,745 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 17:52:32] 2026-01-10 23:51:58,745 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 17:52:32] 2026-01-10 23:51:58,745 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 17:52:32] 2026-01-10 23:51:58,745 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 17:52:32] 2026-01-10 23:51:58,747 | INFO     | fitting pss+swap vs Time
[2026-01-10 17:52:32] 2026-01-10 23:51:58,748 | INFO     | sum of square deviations: 97479037.0
[2026-01-10 17:52:32] 2026-01-10 23:51:58,748 | INFO     | sum of deviations: -9042888178.499998
[2026-01-10 17:52:32] 2026-01-10 23:51:58,748 | INFO     | mean x: 1768086879.5
[2026-01-10 17:52:32] 2026-01-10 23:51:58,748 | INFO     | mean y: 2806745.5147058824
[2026-01-10 17:52:32] 2026-01-10 23:51:58,749 | INFO     | intersect: 164023835607.25348
[2026-01-10 17:52:32] 2026-01-10 23:51:58,749 | INFO     | chi2: 0.07037045213880178
[2026-01-10 17:52:32] 2026-01-10 23:51:58,749 | INFO     | current memory leak: -92.77 B/s (using 68 data points, chi2=0.07)
[2026-01-10 17:52:32] 2026-01-10 23:51:58,749 | INFO     | could have reported an average CPU frequency of 2474 MHz (6 samples)
[2026-01-10 17:52:32] 2026-01-10 23:51:58,750 | INFO     | ..............................
[2026-01-10 17:52:32] 2026-01-10 23:51:58,750 | INFO     | . Timing measurements:
[2026-01-10 17:52:32] 2026-01-10 23:51:58,750 | INFO     | . get job = 0 s
[2026-01-10 17:52:32] 2026-01-10 23:51:58,750 | INFO     | . initial setup = 13 s
[2026-01-10 17:52:32] 2026-01-10 23:51:58,750 | INFO     | . payload setup = 6 s
[2026-01-10 17:52:32] 2026-01-10 23:51:58,750 | INFO     | . stage-in = 0 s
[2026-01-10 17:52:32] 2026-01-10 23:51:58,750 | INFO     | . payload execution = 4569 s
[2026-01-10 17:52:32] 2026-01-10 23:51:58,750 | INFO     | . stage-out = 0 s
[2026-01-10 17:52:32] 2026-01-10 23:51:58,751 | INFO     | . log creation = 0 s
[2026-01-10 17:52:32] 2026-01-10 23:51:58,751 | INFO     | ..............................
[2026-01-10 17:52:32] 2026-01-10 23:51:58,844 | INFO     | 
[2026-01-10 17:52:32] 2026-01-10 23:51:58,844 | INFO     | job summary report
[2026-01-10 17:52:32] 2026-01-10 23:51:58,844 | INFO     | --------------------------------------------------
[2026-01-10 17:52:32] 2026-01-10 23:51:58,845 | INFO     | PanDA job id: 6962314458
[2026-01-10 17:52:32] 2026-01-10 23:51:58,845 | INFO     | task id: 47898826
[2026-01-10 17:52:32] 2026-01-10 23:51:58,845 | INFO     | errors: (none)
[2026-01-10 17:52:32] 2026-01-10 23:51:58,845 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 17:52:32] 2026-01-10 23:51:58,845 | INFO     | pilot state: finished 
[2026-01-10 17:52:32] 2026-01-10 23:51:58,845 | INFO     | transexitcode: 0
[2026-01-10 17:52:32] 2026-01-10 23:51:58,845 | INFO     | exeerrorcode: 0
[2026-01-10 17:52:32] 2026-01-10 23:51:58,845 | INFO     | exeerrordiag: 
[2026-01-10 17:52:32] 2026-01-10 23:51:58,845 | INFO     | exitcode: 0
[2026-01-10 17:52:32] 2026-01-10 23:51:58,845 | INFO     | exitmsg: OK
[2026-01-10 17:52:32] 2026-01-10 23:51:58,846 | INFO     | cpuconsumptiontime: 48636 s
[2026-01-10 17:52:32] 2026-01-10 23:51:58,846 | INFO     | nevents: 400
[2026-01-10 17:52:32] 2026-01-10 23:51:58,846 | INFO     | neventsw: 0
[2026-01-10 17:52:32] 2026-01-10 23:51:58,846 | INFO     | pid: 859528
[2026-01-10 17:52:32] 2026-01-10 23:51:58,846 | INFO     | pgrp: 859528
[2026-01-10 17:52:32] 2026-01-10 23:51:58,846 | INFO     | corecount: 12
[2026-01-10 17:52:32] 2026-01-10 23:51:58,846 | INFO     | event service: False
[2026-01-10 17:52:32] 2026-01-10 23:51:58,846 | INFO     | sizes: {0: 2283972, 5: 2284234, 11: 2284290, 4579: 2310314, 4580: 2319328, 4584: 2319384, 4599: 2319706}
[2026-01-10 17:52:32] 2026-01-10 23:51:58,846 | INFO     | --------------------------------------------------
[2026-01-10 17:52:32] 2026-01-10 23:51:58,846 | INFO     | 
[2026-01-10 17:52:32] 2026-01-10 23:51:58,847 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/26
[2026-01-10 17:52:32] 2026-01-10 23:51:58,896 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,896 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,896 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,897 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,897 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,897 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,897 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,897 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,898 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,898 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,898 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 17:52:32] 2026-01-10 23:51:58,898 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,898 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 17:52:32] 2026-01-10 23:51:58,898 | INFO     | job 6962314458 has completed (purged errors)
[2026-01-10 17:52:32] 2026-01-10 23:51:58,898 | INFO     | overall cleanup function is called
[2026-01-10 17:52:32] 2026-01-10 23:51:59,907 | INFO     | --- collectZombieJob: --- 10, [859528]
[2026-01-10 17:52:32] 2026-01-10 23:51:59,908 | INFO     | zombie collector waiting for pid 859528
[2026-01-10 17:52:32] 2026-01-10 23:51:59,908 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 17:52:32] 2026-01-10 23:51:59,908 | INFO     | collected zombie processes
[2026-01-10 17:52:32] 2026-01-10 23:51:59,908 | INFO     | will attempt to kill all subprocesses of pid=859528
[2026-01-10 17:52:32] 2026-01-10 23:52:00,190 | INFO     | process IDs to be killed: [859528] (in reverse order)
[2026-01-10 17:52:32] 2026-01-10 23:52:00,291 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 17:52:32] 2026-01-10 23:52:00,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 17:52:32] 2026-01-10 23:52:00,302 | INFO     | did not find any defunct processes belonging to 859528
[2026-01-10 17:52:32] 2026-01-10 23:52:00,312 | INFO     | did not find any defunct processes belonging to 859528
[2026-01-10 17:52:32] 2026-01-10 23:52:00,312 | INFO     | ready for new job
[2026-01-10 17:52:32] 2026-01-10 23:52:00,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 17:52:32] 2026-01-10 23:52:00,315 | INFO     | ***************************************
[2026-01-10 17:52:32] 2026-01-10 23:52:00,315 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 17:52:32] 2026-01-10 23:52:00,315 | INFO     | ***************************************
[2026-01-10 17:52:32] 2026-01-10 23:52:00,316 | INFO     | 
[2026-01-10 17:52:32] 2026-01-10 23:52:00,321 | INFO     | architecture information:
[2026-01-10 17:52:32] 2026-01-10 23:52:00,322 | INFO     | executing command: cat /etc/os-release
[2026-01-10 17:52:32] 2026-01-10 23:52:00,338 | INFO     | cat /etc/os-release:
[2026-01-10 17:52:32] NAME="CentOS Linux"
[2026-01-10 17:52:32] VERSION="7 (Core)"
[2026-01-10 17:52:32] ID="centos"
[2026-01-10 17:52:32] ID_LIKE="rhel fedora"
[2026-01-10 17:52:32] VERSION_ID="7"
[2026-01-10 17:52:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 17:52:32] ANSI_COLOR="0;31"
[2026-01-10 17:52:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 17:52:32] HOME_URL="https://www.centos.org/"
[2026-01-10 17:52:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 17:52:32] 
[2026-01-10 17:52:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 17:52:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 17:52:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 17:52:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 17:52:32] 
[2026-01-10 17:52:32] 2026-01-10 23:52:00,338 | INFO     | ***************************************
[2026-01-10 17:52:32] 2026-01-10 23:52:00,841 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/26
[2026-01-10 17:52:32] 2026-01-10 23:52:00,869 | INFO     | sufficient remaining disk space (1805151895552 B)
[2026-01-10 17:52:32] 2026-01-10 23:52:00,870 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 17:52:32] 2026-01-10 23:52:00,870 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 17:52:32] 2026-01-10 23:52:00,870 | INFO     | update_server=False
[2026-01-10 17:52:32] 2026-01-10 23:52:00,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 17:52:32] 2026-01-10 23:52:00,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 17:52:32] 2026-01-10 23:52:01,171 | INFO     | all job control threads have been joined
[2026-01-10 17:52:32] 2026-01-10 23:52:01,172 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 17:52:32] 2026-01-10 23:52:01,172 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 17:52:32] 2026-01-10 23:52:01,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 17:52:32] 2026-01-10 23:52:01,172 | INFO     | will abort loop
[2026-01-10 17:52:32] 2026-01-10 23:52:01,219 | INFO     | all data control threads have been joined
[2026-01-10 17:52:32] 2026-01-10 23:52:01,876 | INFO     | [job] retrieve thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:01,997 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:02,034 | INFO     | [job] validate thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:02,176 | INFO     | [job] control thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:02,178 | INFO     | [job] job monitor thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:02,224 | INFO     | [data] control thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:02,328 | INFO     | all payload control threads have been joined
[2026-01-10 17:52:32] 2026-01-10 23:52:02,397 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:02,546 | INFO     | [payload] validate_post thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:02,554 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:02,808 | INFO     | [data] copytool_in thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:02,876 | INFO     | [data] copytool_out thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:03,036 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 17:52:32] 2026-01-10 23:52:03,089 | INFO     | [payload] failed_post thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:03,298 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:03,330 | INFO     | [payload] control thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:03,852 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 17:52:32] 2026-01-10 23:52:04,858 | INFO     | [job] queue monitor thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:07,042 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 17:52:32] 2026-01-10 23:52:09,722 | INFO     | [monitor] cgroup control has ended
[2026-01-10 17:52:32] 2026-01-10 23:52:10,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130492575352640)>', '<ExcThread(monitor, started 130491885799168)>']
[2026-01-10 17:52:32] 2026-01-10 23:52:15,857 | INFO     | all workflow threads have been joined
[2026-01-10 17:52:32] 2026-01-10 23:52:15,858 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 17:52:32] 2026-01-10 23:52:15,858 | INFO     | traces error code: 0
[2026-01-10 17:52:32] 2026-01-10 23:52:15,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 17:52:32] 2026-01-10 23:52:31,789 | INFO     | PID=852523 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 17:52:32] 2026-01-10 23:52:31,789 | INFO     | .. there are 2 such processes running
[2026-01-10 17:52:32] 2026-01-10 23:52:31,789 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 17:52:32] 2026-01-10 23:52:31,789 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 17:52:32] 2026-01-10 23:52:31,789 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 17:52:32] 2026-01-10 23:52:31,789 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 17:52:32] 2026-01-10 23:52:31,789 | INFO     | [monitor] control thread has ended
[2026-01-10 17:52:32] 2026-01-10 23:52:31,915 [wrapper] ==== pilot stdout END ====
[2026-01-10 17:52:32] 2026-01-10 23:52:31,917 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 17:52:32] 2026-01-10 23:52:31,920 [wrapper] pilotpid: 852523
[2026-01-10 17:52:32] 2026-01-10 23:52:31,923 [wrapper] Pilot exit status: 0
[2026-01-10 17:52:32] 2026-01-10 23:52:31,934 [wrapper] pandaids: 6962314458
[2026-01-10 17:52:32] 2026-01-10 23:52:31,984 [wrapper] cleanup supervisor_pilot  898395 852524
[2026-01-10 17:52:32] 2026-01-10 23:52:31,987 [wrapper] Test setup, not cleaning
[2026-01-10 17:52:32] 2026-01-10 23:52:31,990 [wrapper] apfmon messages muted
[2026-01-10 17:52:32] 2026-01-10 23:52:31,993 [wrapper] ==== wrapper stdout END ====
[2026-01-10 17:52:32] 2026-01-10 23:52:31,996 [wrapper] ==== wrapper stderr END ====
[2026-01-10 17:52:32]  *** Error codes and diagnostics ***
[2026-01-10 17:52:32]     "exeErrorCode": 0,
[2026-01-10 17:52:32]     "exeErrorDiag": "",
[2026-01-10 17:52:32]     "pilotErrorCode": 0,
[2026-01-10 17:52:32]     "pilotErrorDiag": "",
[2026-01-10 17:52:32]  *** Listing of results directory ***
[2026-01-10 17:52:32] total 441648
[2026-01-10 17:52:32] -rw-r--r-- 1 mark mark    579449 Jan  7 14:49 pilot3.tar.gz
[2026-01-10 17:52:32] -rwx------ 1 mark mark     36322 Jan  7 14:54 runpilot2-wrapper.sh
[2026-01-10 17:52:32] -rw-r--r-- 1 mark mark      5112 Jan  7 14:55 queuedata.json
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark       100 Jan 10 16:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 17:52:32] -rwxr-xr-x 1 mark mark      7986 Jan 10 16:34 run_atlas
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark       105 Jan 10 16:34 job.xml
[2026-01-10 17:52:32] -rw-r--r-- 2 mark mark 223857378 Jan 10 16:34 EVNT.47898824._000277.pool.root.1
[2026-01-10 17:52:32] -rw-r--r-- 2 mark mark     15847 Jan 10 16:34 start_atlas.sh
[2026-01-10 17:52:32] drwxrwx--x 2 mark mark      4096 Jan 10 16:34 shared
[2026-01-10 17:52:32] -rw-r--r-- 2 mark mark    592399 Jan 10 16:34 input.tar.gz
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark         0 Jan 10 16:34 boinc_setup_complete
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark      9265 Jan 10 16:34 init_data.xml
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark         0 Jan 10 16:34 boinc_lockfile
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark      2516 Jan 10 16:34 pandaJob.out
[2026-01-10 17:52:32] -rw------- 1 mark mark    989548 Jan 10 16:34 agis_schedconf.cvmfs.json
[2026-01-10 17:52:32] -rw------- 1 mark mark   1516240 Jan 10 16:35 agis_ddmendpoints.agis.ALL.json
[2026-01-10 17:52:32] drwx------ 5 mark mark      4096 Jan 10 16:35 pilot3
[2026-01-10 17:52:32] -rw------- 1 mark mark 222360184 Jan 10 17:51 HITS.47898826._011219.pool.root.1
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark       529 Jan 10 17:51 boinc_task_state.xml
[2026-01-10 17:52:32] -rw------- 1 mark mark        95 Jan 10 17:51 pilot_heartbeat.json
[2026-01-10 17:52:32] -rw------- 1 mark mark      1032 Jan 10 17:51 memory_monitor_summary.json
[2026-01-10 17:52:32] -rw------- 1 mark mark    375983 Jan 10 17:51 log.47898826._011219.job.log.tgz.1
[2026-01-10 17:52:32] -rw------- 1 mark mark      7784 Jan 10 17:51 heartbeat.json
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark      8192 Jan 10 17:52 boinc_mmap_file
[2026-01-10 17:52:32] -rw------- 1 mark mark       821 Jan 10 17:52 pilotlog.txt
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark        27 Jan 10 17:52 wrapper_checkpoint.txt
[2026-01-10 17:52:32] -rw------- 1 mark mark    681073 Jan 10 17:52 log.47898826._011219.job.log.1
[2026-01-10 17:52:32] -rw------- 1 mark mark       357 Jan 10 17:52 output.list
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark       620 Jan 10 17:52 runtime_log
[2026-01-10 17:52:32] -rw------- 1 mark mark   1075200 Jan 10 17:52 result.tar.gz
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark      8903 Jan 10 17:52 runtime_log.err
[2026-01-10 17:52:32] -rw------- 1 mark mark       645 Jan 10 17:52 1f7NDm3ipx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMZiKDmj51XKm.diag
[2026-01-10 17:52:32] -rw-rw-r-- 1 mark mark     22425 Jan 10 17:52 stderr.txt
[2026-01-10 17:52:32] HITS file was successfully produced:
[2026-01-10 17:52:32] -rw------- 1 mark mark 222360184 Jan 10 17:51 shared/HITS.pool.root.1
[2026-01-10 17:52:32]  *** Contents of shared directory: ***
[2026-01-10 17:52:32] total 437420
[2026-01-10 17:52:32] -rw-r--r-- 2 mark mark 223857378 Jan 10 16:34 ATLAS.root_0
[2026-01-10 17:52:32] -rw-r--r-- 2 mark mark     15847 Jan 10 16:34 start_atlas.sh
[2026-01-10 17:52:32] -rw-r--r-- 2 mark mark    592399 Jan 10 16:34 input.tar.gz
[2026-01-10 17:52:32] -rw------- 1 mark mark 222360184 Jan 10 17:51 HITS.pool.root.1
[2026-01-10 17:52:32] -rw------- 1 mark mark   1075200 Jan 10 17:52 result.tar.gz
17:52:35 (848478): run_atlas exited; CPU time 48803.511913
17:52:35 (848478): called boinc_finish(0)

</stderr_txt>
]]>

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