Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:35:38 (38982): wrapper (7.7.26015): starting
17:35:38 (38982): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:35:38] Arguments: --nthreads 8
[2026-01-09 17:35:38] Threads: 8
[2026-01-09 17:35:38] Checking for CVMFS
[2026-01-09 17:35:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:35:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:35:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:35:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:35:38] 2.11.2.0 13817 609326 309844 154959 3 97 14616237 18432000 2827 130560 8 311453168 99.669 268509131 24544 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2026-01-09 17:35:38] CVMFS is ok
[2026-01-09 17:35:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:35:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:35:38] Further information can be found at the LHC@home message board.
[2026-01-09 17:35:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:35:38] Checking for apptainer binary...
[2026-01-09 17:35:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:35:38] Running /usr/bin/apptainer --version
[2026-01-09 17:35:38] apptainer version 1.3.2-1.el7
[2026-01-09 17:35:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:35:39] c-9-29.aglt2.org
[2026-01-09 17:35:39] apptainer works
[2026-01-09 17:35:39] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:35:39] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:35:39] Starting ATLAS job with PandaID=6962016274
[2026-01-09 17:35:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:45:37]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:45:37] 2026-01-10 02:45:01,873 | INFO     | monitor loop #1059: job 0:6962016274 is in state 'finished'
[2026-01-09 21:45:37] 2026-01-10 02:45:01,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:45:37] 2026-01-10 02:45:03,634 | INFO     | time since job start (14953s) is within the limit (174528.0s)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,377 | INFO     | monitor loop #1060: job 0:6962016274 is in state 'finished'
[2026-01-09 21:45:37] 2026-01-10 02:45:04,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,796 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 21:45:37] 2026-01-10 02:45:04,807 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.9020000000014
[2026-01-09 21:45:37] 2026-01-10 02:45:04,811 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962016274/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,812 | INFO     | extracted standard info from prmon json
[2026-01-09 21:45:37] 2026-01-10 02:45:04,812 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 21:45:37] 2026-01-10 02:45:04,812 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 21:45:37] 2026-01-10 02:45:04,813 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 21:45:37] 2026-01-10 02:45:04,813 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 21:45:37] 2026-01-10 02:45:04,816 | INFO     | fitting pss+swap vs Time
[2026-01-09 21:45:37] 2026-01-10 02:45:04,816 | INFO     | sum of square deviations: 4560048290.0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,818 | INFO     | sum of deviations: -7130483553.000009
[2026-01-09 21:45:37] 2026-01-10 02:45:04,818 | INFO     | mean x: 1768005617.0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,818 | INFO     | mean y: 2521770.3673469387
[2026-01-09 21:45:37] 2026-01-10 02:45:04,819 | INFO     | intersect: 2767127356.07489
[2026-01-09 21:45:37] 2026-01-10 02:45:04,819 | INFO     | chi2: 1.4848876049004112
[2026-01-09 21:45:37] 2026-01-10 02:45:04,820 | INFO     | sum of square deviations: 4286517580.0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,822 | INFO     | sum of deviations: -6860122738.499999
[2026-01-09 21:45:37] 2026-01-10 02:45:04,822 | INFO     | mean x: 1768005464.5
[2026-01-09 21:45:37] 2026-01-10 02:45:04,822 | INFO     | mean y: 2521921.120833333
[2026-01-09 21:45:37] 2026-01-10 02:45:04,822 | INFO     | intersect: 2832029618.7910485
[2026-01-09 21:45:37] 2026-01-10 02:45:04,823 | INFO     | chi2: 1.4846712772483734
[2026-01-09 21:45:37] 2026-01-10 02:45:04,823 | INFO     | current chi2=1.4846712772483734 (change=0.01456862131004363 %)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,823 | INFO     | right removable region: 239
[2026-01-09 21:45:37] 2026-01-10 02:45:04,824 | INFO     | sum of square deviations: 4286517580.0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,826 | INFO     | sum of deviations: -40558089798.000015
[2026-01-09 21:45:37] 2026-01-10 02:45:04,826 | INFO     | mean x: 1768005769.5
[2026-01-09 21:45:37] 2026-01-10 02:45:04,826 | INFO     | mean y: 2540215.0416666665
[2026-01-09 21:45:37] 2026-01-10 02:45:04,827 | INFO     | intersect: 16731023284.219494
[2026-01-09 21:45:37] 2026-01-10 02:45:04,827 | INFO     | chi2: 0.178928193372655
[2026-01-09 21:45:37] 2026-01-10 02:45:04,828 | INFO     | current chi2=0.178928193372655 (change=87.95005138556226 %)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,828 | INFO     | sum of square deviations: 4024149870.0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,830 | INFO     | sum of deviations: -36967756007.0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,830 | INFO     | mean x: 1768005922.0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,831 | INFO     | mean y: 2538103.0127659575
[2026-01-09 21:45:37] 2026-01-10 02:45:04,831 | INFO     | intersect: 16244281988.020475
[2026-01-09 21:45:37] 2026-01-10 02:45:04,831 | INFO     | chi2: 0.16835903516268497
[2026-01-09 21:45:37] 2026-01-10 02:45:04,832 | INFO     | current chi2=0.16835903516268497 (change=5.90692724871903 %)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,832 | INFO     | left removable region: 20
[2026-01-09 21:45:37] 2026-01-10 02:45:04,832 | INFO     | sum of square deviations: 3256879670.0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,834 | INFO     | sum of deviations: -20921775730.0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,835 | INFO     | mean x: 1768006044.0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,835 | INFO     | mean y: 2528882.8584474884
[2026-01-09 21:45:37] 2026-01-10 02:45:04,835 | INFO     | intersect: 11359972107.603842
[2026-01-09 21:45:37] 2026-01-10 02:45:04,835 | INFO     | chi2: 0.1277721720176864
[2026-01-09 21:45:37] 2026-01-10 02:45:04,836 | INFO     | current memory leak: -6.42 B/s (using 219 data points, chi2=0.13)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,837 | INFO     | could have reported an average CPU frequency of 2999 MHz (12 samples)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,837 | INFO     | ..............................
[2026-01-09 21:45:37] 2026-01-10 02:45:04,837 | INFO     | . Timing measurements:
[2026-01-09 21:45:37] 2026-01-10 02:45:04,837 | INFO     | . get job = 0 s
[2026-01-09 21:45:37] 2026-01-10 02:45:04,837 | INFO     | . initial setup = 2 s
[2026-01-09 21:45:37] 2026-01-10 02:45:04,838 | INFO     | . payload setup = 4 s
[2026-01-09 21:45:37] 2026-01-10 02:45:04,838 | INFO     | . stage-in = 0 s
[2026-01-09 21:45:37] 2026-01-10 02:45:04,838 | INFO     | . payload execution = 14922 s
[2026-01-09 21:45:37] 2026-01-10 02:45:04,838 | INFO     | . stage-out = 2 s
[2026-01-09 21:45:37] 2026-01-10 02:45:04,839 | INFO     | . log creation = 0 s
[2026-01-09 21:45:37] 2026-01-10 02:45:04,839 | INFO     | ..............................
[2026-01-09 21:45:37] 2026-01-10 02:45:04,962 | INFO     | 
[2026-01-09 21:45:37] 2026-01-10 02:45:04,962 | INFO     | job summary report
[2026-01-09 21:45:37] 2026-01-10 02:45:04,963 | INFO     | --------------------------------------------------
[2026-01-09 21:45:37] 2026-01-10 02:45:04,963 | INFO     | PanDA job id: 6962016274
[2026-01-09 21:45:37] 2026-01-10 02:45:04,963 | INFO     | task id: 47898826
[2026-01-09 21:45:37] 2026-01-10 02:45:04,963 | INFO     | errors: (none)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,964 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 21:45:37] 2026-01-10 02:45:04,964 | INFO     | pilot state: finished 
[2026-01-09 21:45:37] 2026-01-10 02:45:04,964 | INFO     | transexitcode: 0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,964 | INFO     | exeerrorcode: 0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,964 | INFO     | exeerrordiag: 
[2026-01-09 21:45:37] 2026-01-10 02:45:04,965 | INFO     | exitcode: 0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,965 | INFO     | exitmsg: OK
[2026-01-09 21:45:37] 2026-01-10 02:45:04,965 | INFO     | cpuconsumptiontime: 113127 s
[2026-01-09 21:45:37] 2026-01-10 02:45:04,965 | INFO     | nevents: 400
[2026-01-09 21:45:37] 2026-01-10 02:45:04,965 | INFO     | neventsw: 0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,966 | INFO     | pid: 1499
[2026-01-09 21:45:37] 2026-01-10 02:45:04,966 | INFO     | pgrp: 1499
[2026-01-09 21:45:37] 2026-01-10 02:45:04,966 | INFO     | corecount: 8
[2026-01-09 21:45:37] 2026-01-10 02:45:04,966 | INFO     | event service: False
[2026-01-09 21:45:37] 2026-01-10 02:45:04,966 | INFO     | sizes: {0: 2283793, 1: 2283992, 4: 2284254, 11: 2284282, 14930: 2315217, 14933: 2324399, 14940: 2324537}
[2026-01-09 21:45:37] 2026-01-10 02:45:04,967 | INFO     | --------------------------------------------------
[2026-01-09 21:45:37] 2026-01-10 02:45:04,967 | INFO     | 
[2026-01-09 21:45:37] 2026-01-10 02:45:04,967 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 21:45:37] 2026-01-10 02:45:04,984 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,985 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,985 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,985 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,985 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,985 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,985 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,986 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,986 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,986 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,986 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,986 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,986 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,987 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,987 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,987 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,987 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,987 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,987 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,987 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:45:37] 2026-01-10 02:45:04,988 | INFO     | job 6962016274 has completed (purged errors)
[2026-01-09 21:45:37] 2026-01-10 02:45:04,988 | INFO     | overall cleanup function is called
[2026-01-09 21:45:37] 2026-01-10 02:45:05,097 | INFO     | PID=42685 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 21:45:37] 2026-01-10 02:45:05,097 | INFO     | .. there are 4 such processes running
[2026-01-09 21:45:37] 2026-01-10 02:45:05,996 | INFO     | --- collectZombieJob: --- 10, [1499]
[2026-01-09 21:45:37] 2026-01-10 02:45:05,996 | INFO     | zombie collector waiting for pid 1499
[2026-01-09 21:45:37] 2026-01-10 02:45:05,997 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:45:37] 2026-01-10 02:45:05,997 | INFO     | collected zombie processes
[2026-01-09 21:45:37] 2026-01-10 02:45:05,997 | INFO     | will attempt to kill all subprocesses of pid=1499
[2026-01-09 21:45:37] 2026-01-10 02:45:06,231 | INFO     | process IDs to be killed: [1499] (in reverse order)
[2026-01-09 21:45:37] 2026-01-10 02:45:06,302 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:45:37] 2026-01-10 02:45:06,302 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:45:37] 2026-01-10 02:45:06,310 | INFO     | did not find any defunct processes belonging to 1499
[2026-01-09 21:45:37] 2026-01-10 02:45:06,317 | INFO     | did not find any defunct processes belonging to 1499
[2026-01-09 21:45:37] 2026-01-10 02:45:06,317 | INFO     | ready for new job
[2026-01-09 21:45:37] 2026-01-10 02:45:06,318 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:45:37] 2026-01-10 02:45:06,320 | INFO     | ***************************************
[2026-01-09 21:45:37] 2026-01-10 02:45:06,320 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:45:37] 2026-01-10 02:45:06,320 | INFO     | ***************************************
[2026-01-09 21:45:37] 2026-01-10 02:45:06,320 | INFO     | 
[2026-01-09 21:45:37] 2026-01-10 02:45:06,322 | INFO     | architecture information:
[2026-01-09 21:45:37] 2026-01-10 02:45:06,323 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:45:37] 2026-01-10 02:45:06,336 | INFO     | cat /etc/os-release:
[2026-01-09 21:45:37] NAME="CentOS Linux"
[2026-01-09 21:45:37] VERSION="7 (Core)"
[2026-01-09 21:45:37] ID="centos"
[2026-01-09 21:45:37] ID_LIKE="rhel fedora"
[2026-01-09 21:45:37] VERSION_ID="7"
[2026-01-09 21:45:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:45:37] ANSI_COLOR="0;31"
[2026-01-09 21:45:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:45:37] HOME_URL="https://www.centos.org/"
[2026-01-09 21:45:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:45:37] 
[2026-01-09 21:45:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:45:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:45:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:45:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:45:37] 
[2026-01-09 21:45:37] 2026-01-10 02:45:06,337 | INFO     | ***************************************
[2026-01-09 21:45:37] 2026-01-10 02:45:06,839 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 21:45:37] 2026-01-10 02:45:06,851 | INFO     | sufficient remaining disk space (102769885184 B)
[2026-01-09 21:45:37] 2026-01-10 02:45:06,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:45:37] 2026-01-10 02:45:06,852 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:45:37] 2026-01-10 02:45:06,852 | INFO     | update_server=False
[2026-01-09 21:45:37] 2026-01-10 02:45:06,852 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:45:37] 2026-01-10 02:45:06,853 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:45:37] 2026-01-10 02:45:06,853 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:45:37] 2026-01-10 02:45:06,880 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 21:45:37] 2026-01-10 02:45:06,880 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 21:45:37] 2026-01-10 02:45:06,880 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:45:37] 2026-01-10 02:45:06,880 | INFO     | will abort loop
[2026-01-09 21:45:37] 2026-01-10 02:45:06,899 | INFO     | all payload control threads have been joined
[2026-01-09 21:45:37] 2026-01-10 02:45:07,324 | INFO     | all job control threads have been joined
[2026-01-09 21:45:37] 2026-01-10 02:45:07,858 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:07,859 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:07,885 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:07,905 | INFO     | [payload] control thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:07,919 | INFO     | all data control threads have been joined
[2026-01-09 21:45:37] 2026-01-10 02:45:07,941 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:08,234 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:08,329 | INFO     | [job] control thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:08,625 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:08,644 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:08,664 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:08,733 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:45:37] 2026-01-10 02:45:08,758 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:08,859 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:08,926 | INFO     | [data] control thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:08,983 | INFO     | [job] validate thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:09,346 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:12,741 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:45:37] 2026-01-10 02:45:14,460 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:45:37] 2026-01-10 02:45:14,632 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139624402614080)>', '<ExcThread(monitor, started 139623724467968)>']
[2026-01-09 21:45:37] 2026-01-10 02:45:19,658 | INFO     | all workflow threads have been joined
[2026-01-09 21:45:37] 2026-01-10 02:45:19,658 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:45:37] 2026-01-10 02:45:19,659 | INFO     | traces error code: 0
[2026-01-09 21:45:37] 2026-01-10 02:45:19,659 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:45:37] 2026-01-10 02:45:37,349 | INFO     | PID=42685 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 21:45:37] 2026-01-10 02:45:37,350 | INFO     | .. there are 4 such processes running
[2026-01-09 21:45:37] 2026-01-10 02:45:37,350 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:45:37] 2026-01-10 02:45:37,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:45:37] 2026-01-10 02:45:37,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:45:37] 2026-01-10 02:45:37,350 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:45:37] 2026-01-10 02:45:37,350 | INFO     | [monitor] control thread has ended
[2026-01-09 21:45:37] 2026-01-10 02:45:37,420 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:45:37] 2026-01-10 02:45:37,422 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:45:37] 2026-01-10 02:45:37,425 [wrapper] pilotpid: 42685
[2026-01-09 21:45:37] 2026-01-10 02:45:37,427 [wrapper] Pilot exit status: 0
[2026-01-09 21:45:37] 2026-01-10 02:45:37,438 [wrapper] pandaids: 6962016274
[2026-01-09 21:45:37] 2026-01-10 02:45:37,473 [wrapper] cleanup supervisor_pilot  7972 42686
[2026-01-09 21:45:37] 2026-01-10 02:45:37,475 [wrapper] Test setup, not cleaning
[2026-01-09 21:45:37] 2026-01-10 02:45:37,479 [wrapper] apfmon messages muted
[2026-01-09 21:45:37] 2026-01-10 02:45:37,481 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:45:37] 2026-01-10 02:45:37,491 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:45:37]  *** Error codes and diagnostics ***
[2026-01-09 21:45:37]     "exeErrorCode": 0,
[2026-01-09 21:45:37]     "exeErrorDiag": "",
[2026-01-09 21:45:37]     "pilotErrorCode": 0,
[2026-01-09 21:45:37]     "pilotErrorDiag": "",
[2026-01-09 21:45:37]  *** Listing of results directory ***
[2026-01-09 21:45:37] total 441776
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas    579449 Jan  7 10:25 pilot3.tar.gz
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas      5112 Jan  7 10:31 queuedata.json
[2026-01-09 21:45:37] -rwx------ 1 boincer umatlas     36322 Jan  7 10:31 runpilot2-wrapper.sh
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas       100 Jan  9 17:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:45:37] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 17:35 run_atlas
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas       105 Jan  9 17:35 job.xml
[2026-01-09 21:45:37] -rw-r--r-- 2 boincer umatlas 222682298 Jan  9 17:35 EVNT.47898824._000410.pool.root.1
[2026-01-09 21:45:37] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 17:35 start_atlas.sh
[2026-01-09 21:45:37] drwxrwx--x 2 boincer umatlas      4096 Jan  9 17:35 shared
[2026-01-09 21:45:37] -rw-r--r-- 2 boincer umatlas    592394 Jan  9 17:35 input.tar.gz
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas         0 Jan  9 17:35 boinc_lockfile
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas      2516 Jan  9 17:35 pandaJob.out
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas        57 Jan  9 17:35 setup.sh.local
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas    989375 Jan  9 17:35 agis_schedconf.cvmfs.json
[2026-01-09 21:45:37] drwx------ 5 boincer umatlas      4096 Jan  9 17:35 pilot3
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas      6037 Jan  9 21:39 init_data.xml
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas 220720634 Jan  9 21:44 HITS.47898826._009067.pool.root.1
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas       531 Jan  9 21:44 boinc_task_state.xml
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas      1045 Jan  9 21:44 memory_monitor_summary.json
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas   1516240 Jan  9 21:44 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas    473990 Jan  9 21:44 log.47898826._009067.job.log.tgz.1
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas        95 Jan  9 21:44 pilot_heartbeat.json
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas      7835 Jan  9 21:45 heartbeat.json
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas        29 Jan  9 21:45 wrapper_checkpoint.txt
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 21:45 boinc_mmap_file
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas       820 Jan  9 21:45 pilotlog.txt
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas   2061171 Jan  9 21:45 log.47898826._009067.job.log.1
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas       357 Jan  9 21:45 output.list
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas       620 Jan  9 21:45 runtime_log
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas   2549760 Jan  9 21:45 result.tar.gz
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas       660 Jan  9 21:45 txKNDmxgkx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkGiKDmWlTKOm.diag
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas      9333 Jan  9 21:45 runtime_log.err
[2026-01-09 21:45:37] -rw-r--r-- 1 boincer umatlas     21351 Jan  9 21:45 stderr.txt
[2026-01-09 21:45:37] HITS file was successfully produced:
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas 220720634 Jan  9 21:44 shared/HITS.pool.root.1
[2026-01-09 21:45:37]  *** Contents of shared directory: ***
[2026-01-09 21:45:37] total 436104
[2026-01-09 21:45:37] -rw-r--r-- 2 boincer umatlas 222682298 Jan  9 17:35 ATLAS.root_0
[2026-01-09 21:45:37] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 17:35 start_atlas.sh
[2026-01-09 21:45:37] -rw-r--r-- 2 boincer umatlas    592394 Jan  9 17:35 input.tar.gz
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas 220720634 Jan  9 21:44 HITS.pool.root.1
[2026-01-09 21:45:37] -rw------- 1 boincer umatlas   2549760 Jan  9 21:45 result.tar.gz
21:45:39 (38982): run_atlas exited; CPU time 113509.412357
21:45:39 (38982): called boinc_finish(0)

</stderr_txt>
]]>

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