Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:52:38 (903287): wrapper (7.7.26015): starting
17:52:38 (903287): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 17:52:38] Arguments: --nthreads 12
[2026-01-10 17:52:38] Threads: 12
[2026-01-10 17:52:38] Checking for CVMFS
[2026-01-10 17:52:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 17:52:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 17:52:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 17:52:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 17:52:39] 2.13.3.0 328575 695 67260 154997 0 57 3926617 6144001 917 130560 3 1717841 99.953 152702 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-10 17:52:39] CVMFS is ok
[2026-01-10 17:52:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 17:52:39] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-10 17:52:39] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-10 17:52:39] Further information can be found at the LHC@home message board.
[2026-01-10 17:52:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 17:52:39] Checking for apptainer binary...
[2026-01-10 17:52:39] apptainer is not installed, using version from CVMFS
[2026-01-10 17:52:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 17:52:40] XeonFire
[2026-01-10 17:52:40] apptainer works
[2026-01-10 17:52:40] Set ATHENA_PROC_NUMBER=12
[2026-01-10 17:52:40] Set ATHENA_CORE_NUMBER=12
[2026-01-10 17:52:40] Starting ATLAS job with PandaID=6961933610
[2026-01-10 17:52:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:13:21]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:13:21] 2026-01-11 01:12:42,986 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/23/PanDA_Pilot-6961933610/log.47898826._007216.job.log.tgz.1 /var/lib/boinc-client/slots/23/log.4789
[2026-01-10 19:13:21] 2026-01-11 01:12:43,005 | INFO     | adding to output.list: log.47898826._007216.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/b5/log.47898826._007216.job.log.tg
[2026-01-10 19:13:21] 2026-01-11 01:12:43,007 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 19:13:21] 2026-01-11 01:12:43,007 | INFO     | summary of transferred files:
[2026-01-10 19:13:21] 2026-01-11 01:12:43,007 | INFO     |  -- lfn=log.47898826._007216.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 19:13:21] 2026-01-11 01:12:43,007 | INFO     | stage-out finished correctly
[2026-01-10 19:13:21] 2026-01-11 01:12:43,085 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 19:13:21] 2026-01-11 01:12:43,689 | WARNING  | process 914368 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 19:13:21] 2026-01-11 01:12:43,689 | INFO     | using path: /var/lib/boinc-client/slots/23/PanDA_Pilot-6961933610/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:13:21] 2026-01-11 01:12:43,690 | INFO     | using path: /var/lib/boinc-client/slots/23/PanDA_Pilot-6961933610/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:13:21] 2026-01-11 01:12:43,691 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-10 19:13:21] 2026-01-11 01:12:43,691 | WARNING  | maxPSS not found in memory monitor output
[2026-01-10 19:13:21] 2026-01-11 01:12:43,691 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4000659 B
[2026-01-10 19:13:21] 2026-01-11 01:12:43,692 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16337 B
[2026-01-10 19:13:21] 2026-01-11 01:12:43,692 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/23
[2026-01-10 19:13:21] 2026-01-11 01:12:43,710 | INFO     | sufficient remaining disk space (1805479051264 B)
[2026-01-10 19:13:21] 2026-01-11 01:12:43,710 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2026-01-10 19:13:21] 2026-01-11 01:12:43,712 | INFO     | size of work directory /var/lib/boinc-client/slots/23/PanDA_Pilot-6961933610: 4300360 B (within 2768240640 B limit)
[2026-01-10 19:13:21] 2026-01-11 01:12:43,712 | INFO     | pfn file=/var/lib/boinc-client/slots/23/PanDA_Pilot-6961933610/HITS.47898826._007216.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-10 19:13:21] 2026-01-11 01:12:43,712 | INFO     | total size of present files: 0 B (workdir size: 4300360 B)
[2026-01-10 19:13:21] 2026-01-11 01:12:43,712 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/23/PanDA_Pilot-6961933610/HITS.47898826._007216.pool.root.1 since it does not exist
[2026-01-10 19:13:21] 2026-01-11 01:12:43,992 | INFO     | job 6961933610 has state=finished
[2026-01-10 19:13:21] 2026-01-11 01:12:43,993 | INFO     | preparing for final server update for job 6961933610 in state='finished'
[2026-01-10 19:13:21] 2026-01-11 01:12:43,994 | INFO     | this job has now completed (state=finished)
[2026-01-10 19:13:21] 2026-01-11 01:12:43,994 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 19:13:21] 2026-01-11 01:12:43,994 | INFO     | log transfer has been attempted: DONE
[2026-01-10 19:13:21] 2026-01-11 01:12:43,995 | INFO     | job 6961933610 has finished - writing final server update
[2026-01-10 19:13:21] 2026-01-11 01:12:43,995 | INFO     | total number of processed events: 400 (read)
[2026-01-10 19:13:21] 2026-01-11 01:12:43,996 | INFO     | executing command: lscpu
[2026-01-10 19:13:21] 2026-01-11 01:12:44,082 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 19:13:21] 2026-01-11 01:12:44,253 | INFO     | PID=907349 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 19:13:21] 2026-01-11 01:12:44,253 | INFO     | .. there are 2 such processes running
[2026-01-10 19:13:21] 2026-01-11 01:12:44,375 | INFO     | number of running child processes to parent process 914368: 1
[2026-01-10 19:13:21] 2026-01-11 01:12:44,375 | INFO     | maximum number of monitored processes: 6
[2026-01-10 19:13:21] 2026-01-11 01:12:45,254 | INFO     | time since job start (4778s) is within the limit (174528.0s)
[2026-01-10 19:13:21] 2026-01-11 01:12:46,878 | INFO     | monitor loop #351: job 0:6961933610 is in state 'finished'
[2026-01-10 19:13:21] 2026-01-11 01:12:46,878 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:13:21] 2026-01-11 01:12:47,259 | INFO     | time since job start (4780s) is within the limit (174528.0s)
[2026-01-10 19:13:21] 2026-01-11 01:12:48,673 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 19:13:21] 2026-01-11 01:12:48,686 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2754.0275909090897
[2026-01-10 19:13:21] 2026-01-11 01:12:48,701 | INFO     | using path: /var/lib/boinc-client/slots/23/PanDA_Pilot-6961933610/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:13:21] 2026-01-11 01:12:48,702 | INFO     | extracted standard info from prmon json
[2026-01-10 19:13:21] 2026-01-11 01:12:48,702 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:13:21] 2026-01-11 01:12:48,702 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:13:21] 2026-01-11 01:12:48,702 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 19:13:21] 2026-01-11 01:12:48,702 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 19:13:21] 2026-01-11 01:12:48,704 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:13:21] 2026-01-11 01:12:48,705 | INFO     | sum of square deviations: 110960220.0
[2026-01-10 19:13:21] 2026-01-11 01:12:48,705 | INFO     | sum of deviations: -6450940625.000001
[2026-01-10 19:13:21] 2026-01-11 01:12:48,705 | INFO     | mean x: 1768091655.0
[2026-01-10 19:13:21] 2026-01-11 01:12:48,705 | INFO     | mean y: 2761210.1690140846
[2026-01-10 19:13:21] 2026-01-11 01:12:48,705 | INFO     | intersect: 102795043759.38338
[2026-01-10 19:13:21] 2026-01-11 01:12:48,706 | INFO     | chi2: 0.1376115723318624
[2026-01-10 19:13:21] 2026-01-11 01:12:48,706 | INFO     | current memory leak: -58.14 B/s (using 71 data points, chi2=0.14)
[2026-01-10 19:13:21] 2026-01-11 01:12:48,706 | INFO     | could have reported an average CPU frequency of 2322 MHz (6 samples)
[2026-01-10 19:13:21] 2026-01-11 01:12:48,706 | INFO     | ..............................
[2026-01-10 19:13:21] 2026-01-11 01:12:48,706 | INFO     | . Timing measurements:
[2026-01-10 19:13:21] 2026-01-11 01:12:48,706 | INFO     | . get job = 0 s
[2026-01-10 19:13:21] 2026-01-11 01:12:48,707 | INFO     | . initial setup = 15 s
[2026-01-10 19:13:21] 2026-01-11 01:12:48,707 | INFO     | . payload setup = 6 s
[2026-01-10 19:13:21] 2026-01-11 01:12:48,707 | INFO     | . stage-in = 0 s
[2026-01-10 19:13:21] 2026-01-11 01:12:48,707 | INFO     | . payload execution = 4747 s
[2026-01-10 19:13:21] 2026-01-11 01:12:48,707 | INFO     | . stage-out = 0 s
[2026-01-10 19:13:21] 2026-01-11 01:12:48,707 | INFO     | . log creation = 0 s
[2026-01-10 19:13:21] 2026-01-11 01:12:48,707 | INFO     | ..............................
[2026-01-10 19:13:21] 2026-01-11 01:12:48,801 | INFO     | 
[2026-01-10 19:13:21] 2026-01-11 01:12:48,802 | INFO     | job summary report
[2026-01-10 19:13:21] 2026-01-11 01:12:48,802 | INFO     | --------------------------------------------------
[2026-01-10 19:13:21] 2026-01-11 01:12:48,802 | INFO     | PanDA job id: 6961933610
[2026-01-10 19:13:21] 2026-01-11 01:12:48,802 | INFO     | task id: 47898826
[2026-01-10 19:13:21] 2026-01-11 01:12:48,802 | INFO     | errors: (none)
[2026-01-10 19:13:21] 2026-01-11 01:12:48,802 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:13:21] 2026-01-11 01:12:48,802 | INFO     | pilot state: finished 
[2026-01-10 19:13:21] 2026-01-11 01:12:48,802 | INFO     | transexitcode: 0
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | exeerrorcode: 0
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | exeerrordiag: 
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | exitcode: 0
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | exitmsg: OK
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | cpuconsumptiontime: 50467 s
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | nevents: 400
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | neventsw: 0
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | pid: 914368
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | pgrp: 914368
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | corecount: 12
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | event service: False
[2026-01-10 19:13:21] 2026-01-11 01:12:48,803 | INFO     | sizes: {0: 2283922, 5: 2284184, 11: 2284240, 4758: 2310344, 4759: 2319414, 4765: 2319580}
[2026-01-10 19:13:21] 2026-01-11 01:12:48,804 | INFO     | --------------------------------------------------
[2026-01-10 19:13:21] 2026-01-11 01:12:48,804 | INFO     | 
[2026-01-10 19:13:21] 2026-01-11 01:12:48,804 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/23
[2026-01-10 19:13:21] 2026-01-11 01:12:48,833 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,833 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,833 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,833 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,833 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,833 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,833 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,833 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,833 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | job 6961933610 has completed (purged errors)
[2026-01-10 19:13:21] 2026-01-11 01:12:48,834 | INFO     | overall cleanup function is called
[2026-01-10 19:13:21] 2026-01-11 01:12:49,842 | INFO     | --- collectZombieJob: --- 10, [914368]
[2026-01-10 19:13:21] 2026-01-11 01:12:49,842 | INFO     | zombie collector waiting for pid 914368
[2026-01-10 19:13:21] 2026-01-11 01:12:49,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:13:21] 2026-01-11 01:12:49,842 | INFO     | collected zombie processes
[2026-01-10 19:13:21] 2026-01-11 01:12:49,842 | INFO     | will attempt to kill all subprocesses of pid=914368
[2026-01-10 19:13:21] 2026-01-11 01:12:50,180 | INFO     | process IDs to be killed: [914368] (in reverse order)
[2026-01-10 19:13:21] 2026-01-11 01:12:50,335 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:13:21] 2026-01-11 01:12:50,335 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:13:21] 2026-01-11 01:12:50,345 | INFO     | did not find any defunct processes belonging to 914368
[2026-01-10 19:13:21] 2026-01-11 01:12:50,352 | INFO     | did not find any defunct processes belonging to 914368
[2026-01-10 19:13:21] 2026-01-11 01:12:50,352 | INFO     | ready for new job
[2026-01-10 19:13:21] 2026-01-11 01:12:50,353 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:13:21] 2026-01-11 01:12:50,354 | INFO     | ***************************************
[2026-01-10 19:13:21] 2026-01-11 01:12:50,354 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:13:21] 2026-01-11 01:12:50,354 | INFO     | ***************************************
[2026-01-10 19:13:21] 2026-01-11 01:12:50,355 | INFO     | 
[2026-01-10 19:13:21] 2026-01-11 01:12:50,359 | INFO     | architecture information:
[2026-01-10 19:13:21] 2026-01-11 01:12:50,360 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:13:21] 2026-01-11 01:12:50,387 | INFO     | cat /etc/os-release:
[2026-01-10 19:13:21] NAME="CentOS Linux"
[2026-01-10 19:13:21] VERSION="7 (Core)"
[2026-01-10 19:13:21] ID="centos"
[2026-01-10 19:13:21] ID_LIKE="rhel fedora"
[2026-01-10 19:13:21] VERSION_ID="7"
[2026-01-10 19:13:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:13:21] ANSI_COLOR="0;31"
[2026-01-10 19:13:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:13:21] HOME_URL="https://www.centos.org/"
[2026-01-10 19:13:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:13:21] 
[2026-01-10 19:13:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:13:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:13:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:13:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:13:21] 
[2026-01-10 19:13:21] 2026-01-11 01:12:50,388 | INFO     | ***************************************
[2026-01-10 19:13:21] 2026-01-11 01:12:50,890 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/23
[2026-01-10 19:13:21] 2026-01-11 01:12:50,904 | INFO     | sufficient remaining disk space (1805483245568 B)
[2026-01-10 19:13:21] 2026-01-11 01:12:50,904 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:13:21] 2026-01-11 01:12:50,905 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:13:21] 2026-01-11 01:12:50,905 | INFO     | update_server=False
[2026-01-10 19:13:21] 2026-01-11 01:12:50,905 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:13:21] 2026-01-11 01:12:50,905 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:13:21] 2026-01-11 01:12:50,906 | INFO     | aborting loop
[2026-01-10 19:13:21] 2026-01-11 01:12:50,930 | INFO     | all data control threads have been joined
[2026-01-10 19:13:21] 2026-01-11 01:12:51,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:13:21] 2026-01-11 01:12:51,722 | INFO     | all payload control threads have been joined
[2026-01-10 19:13:21] 2026-01-11 01:12:51,910 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:51,911 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:51,926 | INFO     | all job control threads have been joined
[2026-01-10 19:13:21] 2026-01-11 01:12:51,936 | INFO     | [data] control thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:52,099 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:52,502 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:52,568 | INFO     | [job] validate thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:52,687 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:52,727 | INFO     | [payload] control thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:52,931 | INFO     | [job] control thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:52,979 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:52,979 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:52,983 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:53,069 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:53,101 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:53,696 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:13:21] 2026-01-11 01:12:53,810 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:13:21] 2026-01-11 01:12:54,815 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:12:57,703 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:13:21] 2026-01-11 01:13:13,352 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:13:21] 2026-01-11 01:13:13,813 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130694236088128)>', '<ExcThread(monitor, started 130693690545920)>']
[2026-01-10 19:13:21] 2026-01-11 01:13:18,813 | INFO     | all workflow threads have been joined
[2026-01-10 19:13:21] 2026-01-11 01:13:18,814 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:13:21] 2026-01-11 01:13:18,814 | INFO     | traces error code: 0
[2026-01-10 19:13:21] 2026-01-11 01:13:18,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:13:21] 2026-01-11 01:13:20,702 | INFO     | PID=907349 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 19:13:21] 2026-01-11 01:13:20,703 | INFO     | .. there are 2 such processes running
[2026-01-10 19:13:21] 2026-01-11 01:13:20,703 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:13:21] 2026-01-11 01:13:20,703 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:13:21] 2026-01-11 01:13:20,703 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:13:21] 2026-01-11 01:13:20,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:13:21] 2026-01-11 01:13:20,703 | INFO     | [monitor] control thread has ended
[2026-01-10 19:13:21] 2026-01-11 01:13:20,873 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:13:21] 2026-01-11 01:13:20,876 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:13:21] 2026-01-11 01:13:20,878 [wrapper] pilotpid: 907349
[2026-01-10 19:13:21] 2026-01-11 01:13:20,881 [wrapper] Pilot exit status: 0
[2026-01-10 19:13:21] 2026-01-11 01:13:20,890 [wrapper] pandaids: 6961933610
[2026-01-10 19:13:21] 2026-01-11 01:13:20,936 [wrapper] cleanup supervisor_pilot  952136 907350
[2026-01-10 19:13:21] 2026-01-11 01:13:20,939 [wrapper] Test setup, not cleaning
[2026-01-10 19:13:21] 2026-01-11 01:13:20,943 [wrapper] apfmon messages muted
[2026-01-10 19:13:21] 2026-01-11 01:13:20,946 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:13:21] 2026-01-11 01:13:20,949 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:13:21]  *** Error codes and diagnostics ***
[2026-01-10 19:13:21]     "exeErrorCode": 0,
[2026-01-10 19:13:21]     "exeErrorDiag": "",
[2026-01-10 19:13:21]     "pilotErrorCode": 0,
[2026-01-10 19:13:21]     "pilotErrorDiag": "",
[2026-01-10 19:13:21]  *** Listing of results directory ***
[2026-01-10 19:13:21] total 440788
[2026-01-10 19:13:21] -rw-r--r-- 1 mark mark    579449 Jan  7 07:00 pilot3.tar.gz
[2026-01-10 19:13:21] -rwx------ 1 mark mark     36322 Jan  7 07:04 runpilot2-wrapper.sh
[2026-01-10 19:13:21] -rw-r--r-- 1 mark mark      5112 Jan  7 07:05 queuedata.json
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark       100 Jan 10 17:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:13:21] -rwxr-xr-x 1 mark mark      7986 Jan 10 17:52 run_atlas
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark       105 Jan 10 17:52 job.xml
[2026-01-10 19:13:21] -rw-r--r-- 2 mark mark 224332767 Jan 10 17:52 EVNT.47898824._000112.pool.root.1
[2026-01-10 19:13:21] -rw-r--r-- 2 mark mark     15847 Jan 10 17:52 start_atlas.sh
[2026-01-10 19:13:21] drwxrwx--x 2 mark mark      4096 Jan 10 17:52 shared
[2026-01-10 19:13:21] -rw-r--r-- 2 mark mark    592403 Jan 10 17:52 input.tar.gz
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark      9265 Jan 10 17:52 init_data.xml
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark         0 Jan 10 17:52 boinc_setup_complete
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark         0 Jan 10 17:52 boinc_lockfile
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark      2516 Jan 10 17:52 pandaJob.out
[2026-01-10 19:13:21] -rw------- 1 mark mark    989548 Jan 10 17:52 agis_schedconf.cvmfs.json
[2026-01-10 19:13:21] -rw------- 1 mark mark   1516240 Jan 10 17:53 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:13:21] drwx------ 5 mark mark      4096 Jan 10 17:53 pilot3
[2026-01-10 19:13:21] -rw------- 1 mark mark 220950100 Jan 10 19:12 HITS.47898826._007216.pool.root.1
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark       529 Jan 10 19:12 boinc_task_state.xml
[2026-01-10 19:13:21] -rw------- 1 mark mark        95 Jan 10 19:12 pilot_heartbeat.json
[2026-01-10 19:13:21] -rw------- 1 mark mark      1040 Jan 10 19:12 memory_monitor_summary.json
[2026-01-10 19:13:21] -rw------- 1 mark mark    382543 Jan 10 19:12 log.47898826._007216.job.log.tgz.1
[2026-01-10 19:13:21] -rw------- 1 mark mark      7782 Jan 10 19:12 heartbeat.json
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark      8192 Jan 10 19:13 boinc_mmap_file
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark        27 Jan 10 19:13 wrapper_checkpoint.txt
[2026-01-10 19:13:21] -rw------- 1 mark mark       821 Jan 10 19:13 pilotlog.txt
[2026-01-10 19:13:21] -rw------- 1 mark mark    704480 Jan 10 19:13 log.47898826._007216.job.log.1
[2026-01-10 19:13:21] -rw------- 1 mark mark       357 Jan 10 19:13 output.list
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark       620 Jan 10 19:13 runtime_log
[2026-01-10 19:13:21] -rw------- 1 mark mark   1105920 Jan 10 19:13 result.tar.gz
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark      8903 Jan 10 19:13 runtime_log.err
[2026-01-10 19:13:21] -rw------- 1 mark mark       645 Jan 10 19:13 enaMDmROix8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0ycKDmx2tByn.diag
[2026-01-10 19:13:21] -rw-rw-r-- 1 mark mark     22922 Jan 10 19:13 stderr.txt
[2026-01-10 19:13:22] HITS file was successfully produced:
[2026-01-10 19:13:22] -rw------- 1 mark mark 220950100 Jan 10 19:12 shared/HITS.pool.root.1
[2026-01-10 19:13:22]  *** Contents of shared directory: ***
[2026-01-10 19:13:22] total 436532
[2026-01-10 19:13:22] -rw-r--r-- 2 mark mark 224332767 Jan 10 17:52 ATLAS.root_0
[2026-01-10 19:13:22] -rw-r--r-- 2 mark mark     15847 Jan 10 17:52 start_atlas.sh
[2026-01-10 19:13:22] -rw-r--r-- 2 mark mark    592403 Jan 10 17:52 input.tar.gz
[2026-01-10 19:13:22] -rw------- 1 mark mark 220950100 Jan 10 19:12 HITS.pool.root.1
[2026-01-10 19:13:22] -rw------- 1 mark mark   1105920 Jan 10 19:13 result.tar.gz
19:13:24 (903287): run_atlas exited; CPU time 50624.536608
19:13:24 (903287): called boinc_finish(0)

</stderr_txt>
]]>

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