Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:15:20 (1088118): wrapper (7.7.26015): starting
02:15:20 (1088118): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 02:15:20] Arguments: --nthreads 12
[2026-01-11 02:15:20] Threads: 12
[2026-01-11 02:15:20] Checking for CVMFS
[2026-01-11 02:15:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 02:15:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 02:15:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 02:15:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 02:15:27] 2.13.3.0 1088337 0 23656 155010 3 1 4003882 6144001 0 130560 0 0 0.000 1336 975 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-11 02:15:27] CVMFS is ok
[2026-01-11 02:15:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 02:15:27] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-11 02:15:27] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-11 02:15:27] Further information can be found at the LHC@home message board.
[2026-01-11 02:15:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 02:15:27] Checking for apptainer binary...
[2026-01-11 02:15:27] apptainer is not installed, using version from CVMFS
[2026-01-11 02:15:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 02:15:29] XeonFire
[2026-01-11 02:15:29] apptainer works
[2026-01-11 02:15:29] Set ATHENA_PROC_NUMBER=12
[2026-01-11 02:15:29] Set ATHENA_CORE_NUMBER=12
[2026-01-11 02:15:29] Starting ATLAS job with PandaID=6962014842
[2026-01-11 02:15:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 03:34:42]  *** The last 200 lines of the pilot log: ***
[2026-01-11 03:34:42]  workdir=None
[2026-01-11 03:34:42] ]
[2026-01-11 03:34:42] 2026-01-11 09:33:56,860 | INFO     | transferring file log.47898826._008694.job.log.tgz.1 from /var/lib/boinc-client/slots/14/PanDA_Pilot-6962014842/log.47898826._008694.job.log.tgz.1 to /var/lib/boin
[2026-01-11 03:34:42] 2026-01-11 09:33:56,860 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/14/PanDA_Pilot-6962014842/log.47898826._008694.job.log.tgz.1 /var/lib/boinc-client/slots/14/log.4789
[2026-01-11 03:34:42] 2026-01-11 09:33:56,878 | INFO     | adding to output.list: log.47898826._008694.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/90/log.47898826._008694.job.log.tg
[2026-01-11 03:34:42] 2026-01-11 09:33:56,879 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 03:34:42] 2026-01-11 09:33:56,879 | INFO     | summary of transferred files:
[2026-01-11 03:34:42] 2026-01-11 09:33:56,879 | INFO     |  -- lfn=log.47898826._008694.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 03:34:42] 2026-01-11 09:33:56,879 | INFO     | stage-out finished correctly
[2026-01-11 03:34:42] 2026-01-11 09:33:56,934 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 03:34:42] 2026-01-11 09:33:57,536 | INFO     | job 6962014842 has state=finished
[2026-01-11 03:34:42] 2026-01-11 09:33:57,537 | INFO     | preparing for final server update for job 6962014842 in state='finished'
[2026-01-11 03:34:42] 2026-01-11 09:33:57,537 | INFO     | this job has now completed (state=finished)
[2026-01-11 03:34:42] 2026-01-11 09:33:57,538 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 03:34:42] 2026-01-11 09:33:57,538 | INFO     | log transfer has been attempted: DONE
[2026-01-11 03:34:42] 2026-01-11 09:33:57,538 | INFO     | job 6962014842 has finished - writing final server update
[2026-01-11 03:34:42] 2026-01-11 09:33:57,538 | INFO     | total number of processed events: 400 (read)
[2026-01-11 03:34:42] 2026-01-11 09:33:57,539 | INFO     | executing command: lscpu
[2026-01-11 03:34:42] 2026-01-11 09:33:57,602 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 03:34:42] 2026-01-11 09:33:57,878 | INFO     | time since job start (4673s) is within the limit (174528.0s)
[2026-01-11 03:34:42] 2026-01-11 09:33:57,930 | INFO     | monitor loop #345: job 0:6962014842 is in state 'finished'
[2026-01-11 03:34:42] 2026-01-11 09:33:57,930 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 03:34:42] 2026-01-11 09:33:59,883 | INFO     | time since job start (4675s) is within the limit (174528.0s)
[2026-01-11 03:34:42] 2026-01-11 09:34:00,433 | INFO     | monitor loop #346: job 0:6962014842 is in state 'finished'
[2026-01-11 03:34:42] 2026-01-11 09:34:00,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 03:34:42] 2026-01-11 09:34:01,885 | INFO     | time since job start (4677s) is within the limit (174528.0s)
[2026-01-11 03:34:42] 2026-01-11 09:34:02,936 | INFO     | monitor loop #347: job 0:6962014842 is in state 'finished'
[2026-01-11 03:34:42] 2026-01-11 09:34:02,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 03:34:42] 2026-01-11 09:34:03,890 | INFO     | time since job start (4679s) is within the limit (174528.0s)
[2026-01-11 03:34:42] 2026-01-11 09:34:05,324 | INFO     | PID=1092753 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-11 03:34:42] 2026-01-11 09:34:05,324 | INFO     | .. there are 5 such processes running
[2026-01-11 03:34:42] 2026-01-11 09:34:05,439 | INFO     | monitor loop #348: job 0:6962014842 is in state 'finished'
[2026-01-11 03:34:42] 2026-01-11 09:34:05,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 03:34:42] 2026-01-11 09:34:06,325 | INFO     | time since job start (4682s) is within the limit (174528.0s)
[2026-01-11 03:34:42] 2026-01-11 09:34:07,942 | INFO     | monitor loop #349: job 0:6962014842 is in state 'finished'
[2026-01-11 03:34:42] 2026-01-11 09:34:07,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 03:34:42] 2026-01-11 09:34:08,330 | INFO     | time since job start (4684s) is within the limit (174528.0s)
[2026-01-11 03:34:42] 2026-01-11 09:34:08,838 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 03:34:42] 2026-01-11 09:34:08,852 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2591.763681818182
[2026-01-11 03:34:42] 2026-01-11 09:34:08,869 | INFO     | using path: /var/lib/boinc-client/slots/14/PanDA_Pilot-6962014842/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 03:34:42] 2026-01-11 09:34:08,870 | INFO     | extracted standard info from prmon json
[2026-01-11 03:34:42] 2026-01-11 09:34:08,870 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 03:34:42] 2026-01-11 09:34:08,870 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 03:34:42] 2026-01-11 09:34:08,870 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 03:34:42] 2026-01-11 09:34:08,870 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 03:34:42] 2026-01-11 09:34:08,872 | INFO     | fitting pss+swap vs Time
[2026-01-11 03:34:42] 2026-01-11 09:34:08,873 | INFO     | sum of square deviations: 106336877.5
[2026-01-11 03:34:42] 2026-01-11 09:34:08,873 | INFO     | sum of deviations: -11887730538.5
[2026-01-11 03:34:42] 2026-01-11 09:34:08,873 | INFO     | mean x: 1768121802.5
[2026-01-11 03:34:42] 2026-01-11 09:34:08,873 | INFO     | mean y: 2884233.214285714
[2026-01-11 03:34:42] 2026-01-11 09:34:08,873 | INFO     | intersect: 197666724300.05203
[2026-01-11 03:34:42] 2026-01-11 09:34:08,874 | INFO     | chi2: 0.03306648360444869
[2026-01-11 03:34:42] 2026-01-11 09:34:08,874 | INFO     | current memory leak: -111.79 B/s (using 70 data points, chi2=0.03)
[2026-01-11 03:34:42] 2026-01-11 09:34:08,874 | INFO     | could have reported an average CPU frequency of 2279 MHz (6 samples)
[2026-01-11 03:34:42] 2026-01-11 09:34:08,874 | INFO     | ..............................
[2026-01-11 03:34:42] 2026-01-11 09:34:08,874 | INFO     | . Timing measurements:
[2026-01-11 03:34:42] 2026-01-11 09:34:08,874 | INFO     | . get job = 0 s
[2026-01-11 03:34:42] 2026-01-11 09:34:08,875 | INFO     | . initial setup = 13 s
[2026-01-11 03:34:42] 2026-01-11 09:34:08,875 | INFO     | . payload setup = 6 s
[2026-01-11 03:34:42] 2026-01-11 09:34:08,875 | INFO     | . stage-in = 0 s
[2026-01-11 03:34:42] 2026-01-11 09:34:08,875 | INFO     | . payload execution = 4643 s
[2026-01-11 03:34:42] 2026-01-11 09:34:08,875 | INFO     | . stage-out = 0 s
[2026-01-11 03:34:42] 2026-01-11 09:34:08,875 | INFO     | . log creation = 0 s
[2026-01-11 03:34:42] 2026-01-11 09:34:08,875 | INFO     | ..............................
[2026-01-11 03:34:42] 2026-01-11 09:34:08,930 | INFO     | 
[2026-01-11 03:34:42] 2026-01-11 09:34:08,931 | INFO     | job summary report
[2026-01-11 03:34:42] 2026-01-11 09:34:08,931 | INFO     | --------------------------------------------------
[2026-01-11 03:34:42] 2026-01-11 09:34:08,931 | INFO     | PanDA job id: 6962014842
[2026-01-11 03:34:42] 2026-01-11 09:34:08,931 | INFO     | task id: 47898826
[2026-01-11 03:34:42] 2026-01-11 09:34:08,931 | INFO     | errors: (none)
[2026-01-11 03:34:42] 2026-01-11 09:34:08,931 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 03:34:42] 2026-01-11 09:34:08,932 | INFO     | pilot state: finished 
[2026-01-11 03:34:42] 2026-01-11 09:34:08,932 | INFO     | transexitcode: 0
[2026-01-11 03:34:42] 2026-01-11 09:34:08,932 | INFO     | exeerrorcode: 0
[2026-01-11 03:34:42] 2026-01-11 09:34:08,932 | INFO     | exeerrordiag: 
[2026-01-11 03:34:42] 2026-01-11 09:34:08,932 | INFO     | exitcode: 0
[2026-01-11 03:34:42] 2026-01-11 09:34:08,932 | INFO     | exitmsg: OK
[2026-01-11 03:34:42] 2026-01-11 09:34:08,932 | INFO     | cpuconsumptiontime: 50611 s
[2026-01-11 03:34:42] 2026-01-11 09:34:08,932 | INFO     | nevents: 400
[2026-01-11 03:34:42] 2026-01-11 09:34:08,932 | INFO     | neventsw: 0
[2026-01-11 03:34:42] 2026-01-11 09:34:08,932 | INFO     | pid: 1099763
[2026-01-11 03:34:42] 2026-01-11 09:34:08,933 | INFO     | pgrp: 1099763
[2026-01-11 03:34:42] 2026-01-11 09:34:08,933 | INFO     | corecount: 12
[2026-01-11 03:34:42] 2026-01-11 09:34:08,933 | INFO     | event service: False
[2026-01-11 03:34:42] 2026-01-11 09:34:08,933 | INFO     | sizes: {0: 2283801, 1: 2284000, 7: 2284262, 11: 2284290, 4653: 2310339, 4655: 2319537, 4667: 2319675}
[2026-01-11 03:34:42] 2026-01-11 09:34:08,933 | INFO     | --------------------------------------------------
[2026-01-11 03:34:42] 2026-01-11 09:34:08,933 | INFO     | 
[2026-01-11 03:34:42] 2026-01-11 09:34:08,933 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/14
[2026-01-11 03:34:42] 2026-01-11 09:34:08,955 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,956 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,956 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,956 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,956 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,956 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,956 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,956 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,956 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,957 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,957 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,957 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,957 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,957 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,957 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,957 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,957 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,957 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 03:34:42] 2026-01-11 09:34:08,958 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,958 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 03:34:42] 2026-01-11 09:34:08,958 | INFO     | job 6962014842 has completed (purged errors)
[2026-01-11 03:34:42] 2026-01-11 09:34:08,958 | INFO     | overall cleanup function is called
[2026-01-11 03:34:42] 2026-01-11 09:34:09,969 | INFO     | --- collectZombieJob: --- 10, [1099763]
[2026-01-11 03:34:42] 2026-01-11 09:34:09,969 | INFO     | zombie collector waiting for pid 1099763
[2026-01-11 03:34:42] 2026-01-11 09:34:09,969 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 03:34:42] 2026-01-11 09:34:09,969 | INFO     | collected zombie processes
[2026-01-11 03:34:42] 2026-01-11 09:34:09,969 | INFO     | will attempt to kill all subprocesses of pid=1099763
[2026-01-11 03:34:42] 2026-01-11 09:34:10,434 | INFO     | process IDs to be killed: [1099763] (in reverse order)
[2026-01-11 03:34:42] 2026-01-11 09:34:10,600 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 03:34:42] 2026-01-11 09:34:10,601 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 03:34:42] 2026-01-11 09:34:10,610 | INFO     | did not find any defunct processes belonging to 1099763
[2026-01-11 03:34:42] 2026-01-11 09:34:10,618 | INFO     | did not find any defunct processes belonging to 1099763
[2026-01-11 03:34:42] 2026-01-11 09:34:10,618 | INFO     | ready for new job
[2026-01-11 03:34:42] 2026-01-11 09:34:10,619 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 03:34:42] 2026-01-11 09:34:10,620 | INFO     | ***************************************
[2026-01-11 03:34:42] 2026-01-11 09:34:10,620 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 03:34:42] 2026-01-11 09:34:10,621 | INFO     | ***************************************
[2026-01-11 03:34:42] 2026-01-11 09:34:10,621 | INFO     | 
[2026-01-11 03:34:42] 2026-01-11 09:34:10,625 | INFO     | architecture information:
[2026-01-11 03:34:42] 2026-01-11 09:34:10,626 | INFO     | executing command: cat /etc/os-release
[2026-01-11 03:34:42] 2026-01-11 09:34:10,648 | INFO     | cat /etc/os-release:
[2026-01-11 03:34:42] NAME="CentOS Linux"
[2026-01-11 03:34:42] VERSION="7 (Core)"
[2026-01-11 03:34:42] ID="centos"
[2026-01-11 03:34:42] ID_LIKE="rhel fedora"
[2026-01-11 03:34:42] VERSION_ID="7"
[2026-01-11 03:34:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 03:34:42] ANSI_COLOR="0;31"
[2026-01-11 03:34:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 03:34:42] HOME_URL="https://www.centos.org/"
[2026-01-11 03:34:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 03:34:42] 
[2026-01-11 03:34:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 03:34:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 03:34:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 03:34:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 03:34:42] 
[2026-01-11 03:34:42] 2026-01-11 09:34:10,648 | INFO     | ***************************************
[2026-01-11 03:34:42] 2026-01-11 09:34:11,151 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/14
[2026-01-11 03:34:42] 2026-01-11 09:34:11,175 | INFO     | sufficient remaining disk space (1808685596672 B)
[2026-01-11 03:34:42] 2026-01-11 09:34:11,176 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 03:34:42] 2026-01-11 09:34:11,176 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 03:34:42] 2026-01-11 09:34:11,176 | INFO     | update_server=False
[2026-01-11 03:34:42] 2026-01-11 09:34:11,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 03:34:42] 2026-01-11 09:34:11,372 | INFO     | [monitor] cgroup control has ended
[2026-01-11 03:34:42] 2026-01-11 09:34:11,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 03:34:42] 2026-01-11 09:34:11,451 | INFO     | aborting loop
[2026-01-11 03:34:42] 2026-01-11 09:34:11,516 | INFO     | all job control threads have been joined
[2026-01-11 03:34:42] 2026-01-11 09:34:11,821 | INFO     | all payload control threads have been joined
[2026-01-11 03:34:42] 2026-01-11 09:34:12,007 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 03:34:42] 2026-01-11 09:34:12,125 | INFO     | all data control threads have been joined
[2026-01-11 03:34:42] 2026-01-11 09:34:12,181 | INFO     | [job] retrieve thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:12,449 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 03:34:42] 2026-01-11 09:34:12,456 | INFO     | [job] job monitor thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:12,502 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:12,521 | INFO     | [job] control thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:12,826 | INFO     | [payload] control thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:12,915 | INFO     | [job] validate thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:13,130 | INFO     | [data] control thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:13,142 | INFO     | [data] copytool_in thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:13,204 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:13,343 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:13,662 | INFO     | [payload] validate_post thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:13,752 | INFO     | [payload] failed_post thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:13,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 03:34:42] 2026-01-11 09:34:14,455 | INFO     | [data] copytool_out thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:14,946 | INFO     | [job] queue monitor thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:16,012 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:21,820 | INFO     | job.realtimelogging is not enabled
[2026-01-11 03:34:42] 2026-01-11 09:34:22,825 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 03:34:42] 2026-01-11 09:34:24,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127200830252864)>', '<ExcThread(monitor, started 127200137303808)>']
[2026-01-11 03:34:42] 2026-01-11 09:34:29,406 | INFO     | all workflow threads have been joined
[2026-01-11 03:34:42] 2026-01-11 09:34:29,406 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 03:34:42] 2026-01-11 09:34:29,407 | INFO     | traces error code: 0
[2026-01-11 03:34:42] 2026-01-11 09:34:29,407 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 03:34:42] 2026-01-11 09:34:41,836 | INFO     | PID=1092753 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 03:34:42] 2026-01-11 09:34:41,837 | INFO     | .. there are 5 such processes running
[2026-01-11 03:34:42] 2026-01-11 09:34:41,837 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 03:34:42] 2026-01-11 09:34:41,838 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 03:34:42] 2026-01-11 09:34:41,838 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 03:34:42] 2026-01-11 09:34:41,838 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 03:34:42] 2026-01-11 09:34:41,838 | INFO     | [monitor] control thread has ended
[2026-01-11 03:34:42] 2026-01-11 09:34:41,965 [wrapper] ==== pilot stdout END ====
[2026-01-11 03:34:42] 2026-01-11 09:34:41,975 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 03:34:42] 2026-01-11 09:34:41,978 [wrapper] pilotpid: 1092753
[2026-01-11 03:34:42] 2026-01-11 09:34:41,981 [wrapper] Pilot exit status: 0
[2026-01-11 03:34:42] 2026-01-11 09:34:41,994 [wrapper] pandaids: 6962014842
[2026-01-11 03:34:42] 2026-01-11 09:34:42,076 [wrapper] cleanup supervisor_pilot 1193075 1092754
[2026-01-11 03:34:42] 2026-01-11 09:34:42,079 [wrapper] Test setup, not cleaning
[2026-01-11 03:34:42] 2026-01-11 09:34:42,082 [wrapper] apfmon messages muted
[2026-01-11 03:34:42] 2026-01-11 09:34:42,085 [wrapper] ==== wrapper stdout END ====
[2026-01-11 03:34:42] 2026-01-11 09:34:42,088 [wrapper] ==== wrapper stderr END ====
[2026-01-11 03:34:42]  *** Error codes and diagnostics ***
[2026-01-11 03:34:42]     "exeErrorCode": 0,
[2026-01-11 03:34:42]     "exeErrorDiag": "",
[2026-01-11 03:34:42]     "pilotErrorCode": 0,
[2026-01-11 03:34:42]     "pilotErrorDiag": "",
[2026-01-11 03:34:42]  *** Listing of results directory ***
[2026-01-11 03:34:42] total 436700
[2026-01-11 03:34:42] -rw-r--r-- 1 mark mark    579449 Jan  7 09:25 pilot3.tar.gz
[2026-01-11 03:34:42] -rwx------ 1 mark mark     36322 Jan  7 09:31 runpilot2-wrapper.sh
[2026-01-11 03:34:42] -rw-r--r-- 1 mark mark      5112 Jan  7 09:31 queuedata.json
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark       100 Jan 11 02:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 03:34:42] -rwxr-xr-x 1 mark mark      7986 Jan 11 02:15 run_atlas
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark       105 Jan 11 02:15 job.xml
[2026-01-11 03:34:42] -rw-r--r-- 2 mark mark 223127938 Jan 11 02:15 EVNT.47898824._000365.pool.root.1
[2026-01-11 03:34:42] -rw-r--r-- 2 mark mark     15847 Jan 11 02:15 start_atlas.sh
[2026-01-11 03:34:42] drwxrwx--x 2 mark mark      4096 Jan 11 02:15 shared
[2026-01-11 03:34:42] -rw-r--r-- 2 mark mark    592390 Jan 11 02:15 input.tar.gz
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark      9265 Jan 11 02:15 init_data.xml
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark         0 Jan 11 02:15 boinc_setup_complete
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark         0 Jan 11 02:15 boinc_lockfile
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark      2516 Jan 11 02:15 pandaJob.out
[2026-01-11 03:34:42] -rw------- 1 mark mark    989548 Jan 11 02:15 agis_schedconf.cvmfs.json
[2026-01-11 03:34:42] -rw------- 1 mark mark   1516240 Jan 11 02:16 agis_ddmendpoints.agis.ALL.json
[2026-01-11 03:34:42] drwx------ 5 mark mark      4096 Jan 11 02:16 pilot3
[2026-01-11 03:34:42] -rw------- 1 mark mark 217992655 Jan 11 03:33 HITS.47898826._008694.pool.root.1
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark       529 Jan 11 03:33 boinc_task_state.xml
[2026-01-11 03:34:42] -rw------- 1 mark mark      1031 Jan 11 03:33 memory_monitor_summary.json
[2026-01-11 03:34:42] -rw------- 1 mark mark    387086 Jan 11 03:33 log.47898826._008694.job.log.tgz.1
[2026-01-11 03:34:42] -rw------- 1 mark mark      7784 Jan 11 03:34 heartbeat.json
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark      8192 Jan 11 03:34 boinc_mmap_file
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark        27 Jan 11 03:34 wrapper_checkpoint.txt
[2026-01-11 03:34:42] -rw------- 1 mark mark        95 Jan 11 03:34 pilot_heartbeat.json
[2026-01-11 03:34:42] -rw------- 1 mark mark       822 Jan 11 03:34 pilotlog.txt
[2026-01-11 03:34:42] -rw------- 1 mark mark    687681 Jan 11 03:34 log.47898826._008694.job.log.1
[2026-01-11 03:34:42] -rw------- 1 mark mark       357 Jan 11 03:34 output.list
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark       620 Jan 11 03:34 runtime_log
[2026-01-11 03:34:42] -rw------- 1 mark mark   1095680 Jan 11 03:34 result.tar.gz
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark      8903 Jan 11 03:34 runtime_log.err
[2026-01-11 03:34:42] -rw------- 1 mark mark       645 Jan 11 03:34 2JGKDmfgkx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiAdKDm2Vup9n.diag
[2026-01-11 03:34:42] -rw-rw-r-- 1 mark mark     22493 Jan 11 03:34 stderr.txt
[2026-01-11 03:34:42] HITS file was successfully produced:
[2026-01-11 03:34:42] -rw------- 1 mark mark 217992655 Jan 11 03:33 shared/HITS.pool.root.1
[2026-01-11 03:34:42]  *** Contents of shared directory: ***
[2026-01-11 03:34:42] total 432456
[2026-01-11 03:34:42] -rw-r--r-- 2 mark mark 223127938 Jan 11 02:15 ATLAS.root_0
[2026-01-11 03:34:42] -rw-r--r-- 2 mark mark     15847 Jan 11 02:15 start_atlas.sh
[2026-01-11 03:34:42] -rw-r--r-- 2 mark mark    592390 Jan 11 02:15 input.tar.gz
[2026-01-11 03:34:42] -rw------- 1 mark mark 217992655 Jan 11 03:33 HITS.pool.root.1
[2026-01-11 03:34:42] -rw------- 1 mark mark   1095680 Jan 11 03:34 result.tar.gz
03:34:44 (1088118): run_atlas exited; CPU time 50763.934840
03:34:44 (1088118): called boinc_finish(0)

</stderr_txt>
]]>

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