Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:46:09 (430153): wrapper (7.7.26015): starting
02:46:09 (430153): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 02:46:09] Arguments: --nthreads 12
[2026-01-10 02:46:09] Threads: 12
[2026-01-10 02:46:09] Checking for CVMFS
[2026-01-10 02:46:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:46:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:46:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:46:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:46:10] 2.11.0.0 331953 2548 97020 154964 1 228 3475616 6144001 12976 130560 0 30402245 99.998 221603 282 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 02:46:10] CVMFS is ok
[2026-01-10 02:46:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:46:10] Checking for apptainer binary...
[2026-01-10 02:46:10] apptainer is not installed, using version from CVMFS
[2026-01-10 02:46:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:46:10] radiat0r
[2026-01-10 02:46:10] apptainer works
[2026-01-10 02:46:10] Set ATHENA_PROC_NUMBER=12
[2026-01-10 02:46:10] Set ATHENA_CORE_NUMBER=12
[2026-01-10 02:46:10] Starting ATLAS job with PandaID=6963187113
[2026-01-10 02:46:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 03:57:44]  *** The last 200 lines of the pilot log: ***
[2026-01-10 03:57:44]  surl=/var/lib/boinc/slots/14/PanDA_Pilot-6963187113/log.47898826._036987.job.log.tgz.1
[2026-01-10 03:57:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/64/log.47898826._036987.job.log.tgz.1
[2026-01-10 03:57:44]  workdir=None
[2026-01-10 03:57:44] ]
[2026-01-10 03:57:44] 2026-01-10 03:56:58,726 | INFO     | transferring file log.47898826._036987.job.log.tgz.1 from /var/lib/boinc/slots/14/PanDA_Pilot-6963187113/log.47898826._036987.job.log.tgz.1 to /var/lib/boinc/slots
[2026-01-10 03:57:44] 2026-01-10 03:56:58,727 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/14/PanDA_Pilot-6963187113/log.47898826._036987.job.log.tgz.1 /var/lib/boinc/slots/14/log.47898826._036987.j
[2026-01-10 03:57:44] 2026-01-10 03:56:58,758 | INFO     | adding to output.list: log.47898826._036987.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/64/log.47898826._036987.job.log.tg
[2026-01-10 03:57:44] 2026-01-10 03:56:58,759 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 03:57:44] 2026-01-10 03:56:58,759 | INFO     | summary of transferred files:
[2026-01-10 03:57:44] 2026-01-10 03:56:58,759 | INFO     |  -- lfn=log.47898826._036987.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 03:57:44] 2026-01-10 03:56:58,759 | INFO     | stage-out finished correctly
[2026-01-10 03:57:44] 2026-01-10 03:56:59,044 | INFO     | time since job start (4232s) is within the limit (349056.0s)
[2026-01-10 03:57:44] 2026-01-10 03:57:01,048 | INFO     | time since job start (4234s) is within the limit (349056.0s)
[2026-01-10 03:57:44] 2026-01-10 03:57:02,129 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 03:57:44] 2026-01-10 03:57:03,056 | INFO     | time since job start (4236s) is within the limit (349056.0s)
[2026-01-10 03:57:44] 2026-01-10 03:57:03,273 | INFO     | job 6963187113 has state=finished
[2026-01-10 03:57:44] 2026-01-10 03:57:03,273 | INFO     | preparing for final server update for job 6963187113 in state='finished'
[2026-01-10 03:57:44] 2026-01-10 03:57:03,274 | INFO     | this job has now completed (state=finished)
[2026-01-10 03:57:44] 2026-01-10 03:57:03,274 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 03:57:44] 2026-01-10 03:57:03,274 | INFO     | log transfer has been attempted: DONE
[2026-01-10 03:57:44] 2026-01-10 03:57:03,274 | INFO     | job 6963187113 has finished - writing final server update
[2026-01-10 03:57:44] 2026-01-10 03:57:03,275 | INFO     | total number of processed events: 400 (read)
[2026-01-10 03:57:44] 2026-01-10 03:57:03,277 | INFO     | executing command: lscpu
[2026-01-10 03:57:44] 2026-01-10 03:57:03,479 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 03:57:44] 2026-01-10 03:57:04,234 | WARNING  | process 442998 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 03:57:44] 2026-01-10 03:57:04,234 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6963187113/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 03:57:44] 2026-01-10 03:57:05,062 | INFO     | time since job start (4238s) is within the limit (349056.0s)
[2026-01-10 03:57:44] 2026-01-10 03:57:05,078 | INFO     | number of running child processes to parent process 442998: 1
[2026-01-10 03:57:44] 2026-01-10 03:57:05,078 | INFO     | maximum number of monitored processes: 6
[2026-01-10 03:57:44] 2026-01-10 03:57:07,065 | INFO     | PID=434841 has CPU usage=25.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 03:57:44] 2026-01-10 03:57:07,065 | INFO     | .. there are 14 such processes running
[2026-01-10 03:57:44] 2026-01-10 03:57:07,581 | INFO     | monitor loop #292: job 0:6963187113 is in state 'finished'
[2026-01-10 03:57:44] 2026-01-10 03:57:07,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 03:57:44] 2026-01-10 03:57:08,065 | INFO     | time since job start (4241s) is within the limit (349056.0s)
[2026-01-10 03:57:44] 2026-01-10 03:57:10,039 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 03:57:44] 2026-01-10 03:57:10,068 | INFO     | time since job start (4243s) is within the limit (349056.0s)
[2026-01-10 03:57:44] 2026-01-10 03:57:10,085 | INFO     | monitor loop #293: job 0:6963187113 is in state 'finished'
[2026-01-10 03:57:44] 2026-01-10 03:57:10,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 03:57:44] 2026-01-10 03:57:10,102 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2407.3584257812486
[2026-01-10 03:57:44] 2026-01-10 03:57:10,189 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6963187113/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 03:57:44] 2026-01-10 03:57:10,190 | INFO     | extracted standard info from prmon json
[2026-01-10 03:57:44] 2026-01-10 03:57:10,190 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 03:57:44] 2026-01-10 03:57:10,190 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 03:57:44] 2026-01-10 03:57:10,191 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 03:57:44] 2026-01-10 03:57:10,191 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 03:57:44] 2026-01-10 03:57:10,192 | INFO     | fitting pss+swap vs Time
[2026-01-10 03:57:44] 2026-01-10 03:57:10,193 | INFO     | sum of square deviations: 73882315.5
[2026-01-10 03:57:44] 2026-01-10 03:57:10,193 | INFO     | sum of deviations: 679850002.0000001
[2026-01-10 03:57:44] 2026-01-10 03:57:10,193 | INFO     | mean x: 1768015385.5
[2026-01-10 03:57:44] 2026-01-10 03:57:10,193 | INFO     | mean y: 2665281.0967741935
[2026-01-10 03:57:44] 2026-01-10 03:57:10,193 | INFO     | intersect: -16266251782.936039
[2026-01-10 03:57:44] 2026-01-10 03:57:10,194 | INFO     | chi2: 0.029794343832526275
[2026-01-10 03:57:44] 2026-01-10 03:57:10,194 | INFO     | current memory leak: 9.20 B/s (using 62 data points, chi2=0.03)
[2026-01-10 03:57:44] 2026-01-10 03:57:10,194 | INFO     | could have reported an average CPU frequency of 2375 MHz (6 samples)
[2026-01-10 03:57:44] 2026-01-10 03:57:10,194 | INFO     | ..............................
[2026-01-10 03:57:44] 2026-01-10 03:57:10,194 | INFO     | . Timing measurements:
[2026-01-10 03:57:44] 2026-01-10 03:57:10,194 | INFO     | . get job = 0 s
[2026-01-10 03:57:44] 2026-01-10 03:57:10,194 | INFO     | . initial setup = 3 s
[2026-01-10 03:57:44] 2026-01-10 03:57:10,195 | INFO     | . payload setup = 8 s
[2026-01-10 03:57:44] 2026-01-10 03:57:10,195 | INFO     | . stage-in = 0 s
[2026-01-10 03:57:44] 2026-01-10 03:57:10,195 | INFO     | . payload execution = 4200 s
[2026-01-10 03:57:44] 2026-01-10 03:57:10,195 | INFO     | . stage-out = 0 s
[2026-01-10 03:57:44] 2026-01-10 03:57:10,195 | INFO     | . log creation = 0 s
[2026-01-10 03:57:44] 2026-01-10 03:57:10,195 | INFO     | ..............................
[2026-01-10 03:57:44] 2026-01-10 03:57:10,581 | INFO     | 
[2026-01-10 03:57:44] 2026-01-10 03:57:10,581 | INFO     | job summary report
[2026-01-10 03:57:44] 2026-01-10 03:57:10,581 | INFO     | --------------------------------------------------
[2026-01-10 03:57:44] 2026-01-10 03:57:10,581 | INFO     | PanDA job id: 6963187113
[2026-01-10 03:57:44] 2026-01-10 03:57:10,581 | INFO     | task id: 47898826
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | errors: (none)
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | pilot state: finished 
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | transexitcode: 0
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | exeerrorcode: 0
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | exeerrordiag: 
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | exitcode: 0
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | exitmsg: OK
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | cpuconsumptiontime: 46068 s
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | nevents: 400
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | neventsw: 0
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | pid: 442998
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | pgrp: 442998
[2026-01-10 03:57:44] 2026-01-10 03:57:10,582 | INFO     | corecount: 12
[2026-01-10 03:57:44] 2026-01-10 03:57:10,583 | INFO     | event service: False
[2026-01-10 03:57:44] 2026-01-10 03:57:10,583 | INFO     | sizes: {0: 2283857, 1: 2283999, 8: 2284261, 11: 2284289, 4212: 2310542, 4214: 2319542, 4217: 2319726, 4225: 2319920}
[2026-01-10 03:57:44] 2026-01-10 03:57:10,583 | INFO     | --------------------------------------------------
[2026-01-10 03:57:44] 2026-01-10 03:57:10,583 | INFO     | 
[2026-01-10 03:57:44] 2026-01-10 03:57:10,583 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2026-01-10 03:57:44] 2026-01-10 03:57:10,614 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,615 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,615 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,615 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,615 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,615 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,616 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 03:57:44] 2026-01-10 03:57:10,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,616 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 03:57:44] 2026-01-10 03:57:10,617 | INFO     | job 6963187113 has completed (purged errors)
[2026-01-10 03:57:44] 2026-01-10 03:57:10,617 | INFO     | overall cleanup function is called
[2026-01-10 03:57:44] 2026-01-10 03:57:11,627 | INFO     | --- collectZombieJob: --- 10, [442998]
[2026-01-10 03:57:44] 2026-01-10 03:57:11,627 | INFO     | zombie collector waiting for pid 442998
[2026-01-10 03:57:44] 2026-01-10 03:57:11,627 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 03:57:44] 2026-01-10 03:57:11,627 | INFO     | collected zombie processes
[2026-01-10 03:57:44] 2026-01-10 03:57:11,628 | INFO     | will attempt to kill all subprocesses of pid=442998
[2026-01-10 03:57:44] 2026-01-10 03:57:12,481 | INFO     | process IDs to be killed: [442998] (in reverse order)
[2026-01-10 03:57:44] 2026-01-10 03:57:12,764 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 03:57:44] 2026-01-10 03:57:12,765 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 03:57:44] 2026-01-10 03:57:12,796 | INFO     | did not find any defunct processes belonging to 442998
[2026-01-10 03:57:44] 2026-01-10 03:57:12,825 | INFO     | did not find any defunct processes belonging to 442998
[2026-01-10 03:57:44] 2026-01-10 03:57:12,825 | INFO     | ready for new job
[2026-01-10 03:57:44] 2026-01-10 03:57:12,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 03:57:44] 2026-01-10 03:57:12,827 | INFO     | ***************************************
[2026-01-10 03:57:44] 2026-01-10 03:57:12,827 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 03:57:44] 2026-01-10 03:57:12,827 | INFO     | ***************************************
[2026-01-10 03:57:44] 2026-01-10 03:57:12,827 | INFO     | 
[2026-01-10 03:57:44] 2026-01-10 03:57:12,871 | INFO     | architecture information:
[2026-01-10 03:57:44] 2026-01-10 03:57:12,872 | INFO     | executing command: cat /etc/os-release
[2026-01-10 03:57:44] 2026-01-10 03:57:12,897 | INFO     | cat /etc/os-release:
[2026-01-10 03:57:44] NAME="CentOS Linux"
[2026-01-10 03:57:44] VERSION="7 (Core)"
[2026-01-10 03:57:44] ID="centos"
[2026-01-10 03:57:44] ID_LIKE="rhel fedora"
[2026-01-10 03:57:44] VERSION_ID="7"
[2026-01-10 03:57:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 03:57:44] ANSI_COLOR="0;31"
[2026-01-10 03:57:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 03:57:44] HOME_URL="https://www.centos.org/"
[2026-01-10 03:57:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 03:57:44] 
[2026-01-10 03:57:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 03:57:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 03:57:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 03:57:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 03:57:44] 
[2026-01-10 03:57:44] 2026-01-10 03:57:12,898 | INFO     | ***************************************
[2026-01-10 03:57:44] 2026-01-10 03:57:13,400 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2026-01-10 03:57:44] 2026-01-10 03:57:13,430 | INFO     | sufficient remaining disk space (1707618598912 B)
[2026-01-10 03:57:44] 2026-01-10 03:57:13,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 03:57:44] 2026-01-10 03:57:13,431 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 03:57:44] 2026-01-10 03:57:13,431 | INFO     | update_server=False
[2026-01-10 03:57:44] 2026-01-10 03:57:13,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 03:57:44] 2026-01-10 03:57:13,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 03:57:44] 2026-01-10 03:57:13,594 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:57:44] 2026-01-10 03:57:13,594 | INFO     | aborting loop
[2026-01-10 03:57:44] 2026-01-10 03:57:13,768 | INFO     | all data control threads have been joined
[2026-01-10 03:57:44] 2026-01-10 03:57:14,382 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 03:57:44] 2026-01-10 03:57:14,437 | INFO     | [job] retrieve thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:14,599 | INFO     | [job] job monitor thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:14,685 | INFO     | [job] validate thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:14,756 | INFO     | [data] copytool_in thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:14,772 | INFO     | [data] control thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:14,778 | INFO     | all job control threads have been joined
[2026-01-10 03:57:44] 2026-01-10 03:57:14,802 | INFO     | [payload] validate_post thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:14,874 | INFO     | all payload control threads have been joined
[2026-01-10 03:57:44] 2026-01-10 03:57:15,064 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:15,068 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:15,196 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:15,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:57:44] 2026-01-10 03:57:15,780 | INFO     | [job] control thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:15,838 | INFO     | [payload] failed_post thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:15,879 | INFO     | [payload] control thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:16,313 | INFO     | [job] queue monitor thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:16,388 | INFO     | [data] copytool_out thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:17,438 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:24,096 | INFO     | job.realtimelogging is not enabled
[2026-01-10 03:57:44] 2026-01-10 03:57:25,100 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 03:57:44] 2026-01-10 03:57:33,220 | INFO     | [monitor] cgroup control has ended
[2026-01-10 03:57:44] 2026-01-10 03:57:34,893 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139633961097024)>', '<ExcThread(monitor, started 139633539147520)>']
[2026-01-10 03:57:44] 2026-01-10 03:57:39,916 | INFO     | all workflow threads have been joined
[2026-01-10 03:57:44] 2026-01-10 03:57:39,916 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 03:57:44] 2026-01-10 03:57:39,916 | INFO     | traces error code: 0
[2026-01-10 03:57:44] 2026-01-10 03:57:39,917 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 03:57:44] 2026-01-10 03:57:44,185 | INFO     | PID=434841 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 03:57:44] 2026-01-10 03:57:44,186 | INFO     | .. there are 14 such processes running
[2026-01-10 03:57:44] 2026-01-10 03:57:44,187 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 03:57:44] 2026-01-10 03:57:44,187 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 03:57:44] 2026-01-10 03:57:44,187 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 03:57:44] 2026-01-10 03:57:44,187 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 03:57:44] 2026-01-10 03:57:44,187 | INFO     | [monitor] control thread has ended
[2026-01-10 03:57:44] 2026-01-10 03:57:44,432 [wrapper] ==== pilot stdout END ====
[2026-01-10 03:57:44] 2026-01-10 03:57:44,437 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 03:57:44] 2026-01-10 03:57:44,440 [wrapper] pilotpid: 434841
[2026-01-10 03:57:44] 2026-01-10 03:57:44,443 [wrapper] Pilot exit status: 0
[2026-01-10 03:57:44] 2026-01-10 03:57:44,456 [wrapper] pandaids: 6963187113
[2026-01-10 03:57:44] 2026-01-10 03:57:44,634 [wrapper] cleanup supervisor_pilot  790997 434842
[2026-01-10 03:57:44] 2026-01-10 03:57:44,637 [wrapper] Test setup, not cleaning
[2026-01-10 03:57:44] 2026-01-10 03:57:44,641 [wrapper] apfmon messages muted
[2026-01-10 03:57:44] 2026-01-10 03:57:44,644 [wrapper] ==== wrapper stdout END ====
[2026-01-10 03:57:44] 2026-01-10 03:57:44,647 [wrapper] ==== wrapper stderr END ====
[2026-01-10 03:57:44]  *** Error codes and diagnostics ***
[2026-01-10 03:57:44]     "exeErrorCode": 0,
[2026-01-10 03:57:44]     "exeErrorDiag": "",
[2026-01-10 03:57:44]     "pilotErrorCode": 0,
[2026-01-10 03:57:44]     "pilotErrorDiag": "",
[2026-01-10 03:57:44]  *** Listing of results directory ***
[2026-01-10 03:57:44] total 437660
[2026-01-10 03:57:44] -rwx------ 1 boinc boinc     36322 Jan  9 01:01 runpilot2-wrapper.sh
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:06 pilot3.tar.gz
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:06 queuedata.json
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc       100 Jan 10 02:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 03:57:44] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 02:46 run_atlas
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc       105 Jan 10 02:46 job.xml
[2026-01-10 03:57:44] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:46 start_atlas.sh
[2026-01-10 03:57:44] drwxrwx--x 2 boinc boinc      4096 Jan 10 02:46 shared
[2026-01-10 03:57:44] -rw-r--r-- 2 boinc boinc    592402 Jan 10 02:46 input.tar.gz
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc      9416 Jan 10 02:46 init_data.xml
[2026-01-10 03:57:44] -rw-r--r-- 2 boinc boinc 225045758 Jan 10 02:46 EVNT.47898824._001418.pool.root.1
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:46 boinc_setup_complete
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:46 boinc_lockfile
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc      2519 Jan 10 02:46 pandaJob.out
[2026-01-10 03:57:44] -rw------- 1 boinc boinc    989382 Jan 10 02:46 agis_schedconf.cvmfs.json
[2026-01-10 03:57:44] -rw------- 1 boinc boinc   1516240 Jan 10 02:46 agis_ddmendpoints.agis.ALL.json
[2026-01-10 03:57:44] drwx------ 5 boinc boinc      4096 Jan 10 02:46 pilot3
[2026-01-10 03:57:44] -rw------- 1 boinc boinc 217213981 Jan 10 03:56 HITS.47898826._036987.pool.root.1
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc       529 Jan 10 03:56 boinc_task_state.xml
[2026-01-10 03:57:44] -rw------- 1 boinc boinc      1027 Jan 10 03:56 memory_monitor_summary.json
[2026-01-10 03:57:44] -rw------- 1 boinc boinc    382942 Jan 10 03:56 log.47898826._036987.job.log.tgz.1
[2026-01-10 03:57:44] -rw------- 1 boinc boinc      7740 Jan 10 03:57 heartbeat.json
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc      8192 Jan 10 03:57 boinc_mmap_file
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc        27 Jan 10 03:57 wrapper_checkpoint.txt
[2026-01-10 03:57:44] -rw------- 1 boinc boinc        95 Jan 10 03:57 pilot_heartbeat.json
[2026-01-10 03:57:44] -rw------- 1 boinc boinc       822 Jan 10 03:57 pilotlog.txt
[2026-01-10 03:57:44] -rw------- 1 boinc boinc    610862 Jan 10 03:57 log.47898826._036987.job.log.1
[2026-01-10 03:57:44] -rw------- 1 boinc boinc       357 Jan 10 03:57 output.list
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc       620 Jan 10 03:57 runtime_log
[2026-01-10 03:57:44] -rw------- 1 boinc boinc   1013760 Jan 10 03:57 result.tar.gz
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc      8788 Jan 10 03:57 runtime_log.err
[2026-01-10 03:57:44] -rw------- 1 boinc boinc       643 Jan 10 03:57 Ls0LDmx3Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhqgKDmGZSTWn.diag
[2026-01-10 03:57:44] -rw-r--r-- 1 boinc boinc     22111 Jan 10 03:57 stderr.txt
[2026-01-10 03:57:44] HITS file was successfully produced:
[2026-01-10 03:57:44] -rw------- 1 boinc boinc 217213981 Jan 10 03:56 shared/HITS.pool.root.1
[2026-01-10 03:57:44]  *** Contents of shared directory: ***
[2026-01-10 03:57:44] total 433492
[2026-01-10 03:57:44] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:46 start_atlas.sh
[2026-01-10 03:57:44] -rw-r--r-- 2 boinc boinc    592402 Jan 10 02:46 input.tar.gz
[2026-01-10 03:57:44] -rw-r--r-- 2 boinc boinc 225045758 Jan 10 02:46 ATLAS.root_0
[2026-01-10 03:57:44] -rw------- 1 boinc boinc 217213981 Jan 10 03:56 HITS.pool.root.1
[2026-01-10 03:57:44] -rw------- 1 boinc boinc   1013760 Jan 10 03:57 result.tar.gz
03:57:46 (430153): run_atlas exited; CPU time 46345.513422
03:57:46 (430153): called boinc_finish(0)

</stderr_txt>
]]>

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