Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:21:23 (26831): wrapper (7.7.26015): starting
08:21:23 (26831): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:21:23] Arguments: --nthreads 8
[2026-01-10 08:21:23] Threads: 8
[2026-01-10 08:21:23] Checking for CVMFS
[2026-01-10 08:21:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:21:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:21:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:21:23] 2.11.2.0 21292 36530 130740 154972 0 124 25105316 25165825 687 130560 0 8481398 99.611 11379627 5135 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 08:21:23] CVMFS is ok
[2026-01-10 08:21:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:21:23] Checking for apptainer binary...
[2026-01-10 08:21:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:21:23] Running /usr/bin/apptainer --version
[2026-01-10 08:21:23] apptainer version 1.3.2-1.el7
[2026-01-10 08:21:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:21:25] cg-vwn383.simple-grid.lan
[2026-01-10 08:21:25] apptainer works
[2026-01-10 08:21:25] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:21:25] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:21:25] Starting ATLAS job with PandaID=6963187027
[2026-01-10 08:21:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:40:27]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:40:27] 2026-01-10 12:39:21,191 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 13:40:27] 2026-01-10 12:39:21,192 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 13:40:27] 2026-01-10 12:39:21,194 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6963187027/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:40:27] 2026-01-10 12:39:21,195 | INFO     | extracted standard info from prmon json
[2026-01-10 13:40:27] 2026-01-10 12:39:21,195 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:40:27] 2026-01-10 12:39:21,195 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:40:27] 2026-01-10 12:39:21,196 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 13:40:27] 2026-01-10 12:39:21,196 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 13:40:27] 2026-01-10 12:39:21,203 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:40:27] 2026-01-10 12:39:21,203 | INFO     | sum of square deviations: 9237596457.5
[2026-01-10 13:40:27] 2026-01-10 12:39:21,207 | INFO     | sum of deviations: -51105763979.50001
[2026-01-10 13:40:27] 2026-01-10 12:39:21,207 | INFO     | mean x: 1768039163.5
[2026-01-10 13:40:27] 2026-01-10 12:39:21,207 | INFO     | mean y: 2523308.7580645164
[2026-01-10 13:40:27] 2026-01-10 12:39:21,207 | INFO     | intersect: 9783962951.857306
[2026-01-10 13:40:27] 2026-01-10 12:39:21,208 | INFO     | chi2: 2.551148817896091
[2026-01-10 13:40:27] 2026-01-10 12:39:21,208 | INFO     | sum of square deviations: 8797783560.0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,211 | INFO     | sum of deviations: -29726408309.00003
[2026-01-10 13:40:27] 2026-01-10 12:39:21,212 | INFO     | mean x: 1768039011.0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,212 | INFO     | mean y: 2530628.5639344263
[2026-01-10 13:40:27] 2026-01-10 12:39:21,212 | INFO     | intersect: 5976472723.046035
[2026-01-10 13:40:27] 2026-01-10 12:39:21,212 | INFO     | chi2: 1.7875621894494256
[2026-01-10 13:40:27] 2026-01-10 12:39:21,213 | INFO     | current chi2=1.7875621894494256 (change=29.93108920538741 %)
[2026-01-10 13:40:27] 2026-01-10 12:39:21,213 | INFO     | sum of square deviations: 8372156975.0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,216 | INFO     | sum of deviations: -29254274042.999996
[2026-01-10 13:40:27] 2026-01-10 12:39:21,216 | INFO     | mean x: 1768038858.5
[2026-01-10 13:40:27] 2026-01-10 12:39:21,217 | INFO     | mean y: 2530797.7466666666
[2026-01-10 13:40:27] 2026-01-10 12:39:21,217 | INFO     | intersect: 6180471971.052474
[2026-01-10 13:40:27] 2026-01-10 12:39:21,217 | INFO     | chi2: 1.7862862184422488
[2026-01-10 13:40:27] 2026-01-10 12:39:21,217 | INFO     | current chi2=1.7862862184422488 (change=0.07138050998772828 %)
[2026-01-10 13:40:27] 2026-01-10 12:39:21,218 | INFO     | right removable region: 299
[2026-01-10 13:40:27] 2026-01-10 12:39:21,218 | INFO     | sum of square deviations: 8797783560.0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,221 | INFO     | sum of deviations: -99124538230.00002
[2026-01-10 13:40:27] 2026-01-10 12:39:21,222 | INFO     | mean x: 1768039316.0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,222 | INFO     | mean y: 2539836.7016393445
[2026-01-10 13:40:27] 2026-01-10 12:39:21,222 | INFO     | intersect: 19923020896.02257
[2026-01-10 13:40:27] 2026-01-10 12:39:21,222 | INFO     | chi2: 1.0775685763111982
[2026-01-10 13:40:27] 2026-01-10 12:39:21,223 | INFO     | current chi2=1.0775685763111982 (change=57.76143795484816 %)
[2026-01-10 13:40:27] 2026-01-10 12:39:21,223 | INFO     | sum of square deviations: 8372156975.0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,226 | INFO     | sum of deviations: -99755940811.99986
[2026-01-10 13:40:27] 2026-01-10 12:39:21,226 | INFO     | mean x: 1768039468.5
[2026-01-10 13:40:27] 2026-01-10 12:39:21,226 | INFO     | mean y: 2540044.4133333336
[2026-01-10 13:40:27] 2026-01-10 12:39:21,227 | INFO     | intersect: 21069087303.337097
[2026-01-10 13:40:27] 2026-01-10 12:39:21,227 | INFO     | chi2: 1.0557980753200433
[2026-01-10 13:40:27] 2026-01-10 12:39:21,227 | INFO     | current chi2=1.0557980753200433 (change=2.0203355470591973 %)
[2026-01-10 13:40:27] 2026-01-10 12:39:21,227 | INFO     | left removable region: 20
[2026-01-10 13:40:27] 2026-01-10 12:39:21,228 | INFO     | sum of square deviations: 6734191380.0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,230 | INFO     | sum of deviations: -58710826282.00001
[2026-01-10 13:40:27] 2026-01-10 12:39:21,231 | INFO     | mean x: 1768039438.0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,231 | INFO     | mean y: 2541094.569892473
[2026-01-10 13:40:27] 2026-01-10 12:39:21,231 | INFO     | intersect: 15416872295.852583
[2026-01-10 13:40:27] 2026-01-10 12:39:21,231 | INFO     | chi2: 0.24894086479498223
[2026-01-10 13:40:27] 2026-01-10 12:39:21,232 | INFO     | current memory leak: -8.72 B/s (using 279 data points, chi2=0.25)
[2026-01-10 13:40:27] 2026-01-10 12:39:21,232 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-01-10 13:40:27] 2026-01-10 12:39:21,233 | INFO     | ..............................
[2026-01-10 13:40:27] 2026-01-10 12:39:21,233 | INFO     | . Timing measurements:
[2026-01-10 13:40:27] 2026-01-10 12:39:21,233 | INFO     | . get job = 0 s
[2026-01-10 13:40:27] 2026-01-10 12:39:21,233 | INFO     | . initial setup = 2 s
[2026-01-10 13:40:27] 2026-01-10 12:39:21,233 | INFO     | . payload setup = 8 s
[2026-01-10 13:40:27] 2026-01-10 12:39:21,233 | INFO     | . stage-in = 0 s
[2026-01-10 13:40:27] 2026-01-10 12:39:21,233 | INFO     | . payload execution = 18914 s
[2026-01-10 13:40:27] 2026-01-10 12:39:21,233 | INFO     | . stage-out = 4 s
[2026-01-10 13:40:27] 2026-01-10 12:39:21,233 | INFO     | . log creation = 1 s
[2026-01-10 13:40:27] 2026-01-10 12:39:21,234 | INFO     | ..............................
[2026-01-10 13:40:27] 2026-01-10 12:39:21,391 | INFO     | 
[2026-01-10 13:40:27] 2026-01-10 12:39:21,391 | INFO     | job summary report
[2026-01-10 13:40:27] 2026-01-10 12:39:21,391 | INFO     | --------------------------------------------------
[2026-01-10 13:40:27] 2026-01-10 12:39:21,391 | INFO     | PanDA job id: 6963187027
[2026-01-10 13:40:27] 2026-01-10 12:39:21,391 | INFO     | task id: 47898826
[2026-01-10 13:40:27] 2026-01-10 12:39:21,391 | INFO     | errors: (none)
[2026-01-10 13:40:27] 2026-01-10 12:39:21,392 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:40:27] 2026-01-10 12:39:21,392 | INFO     | pilot state: finished 
[2026-01-10 13:40:27] 2026-01-10 12:39:21,392 | INFO     | transexitcode: 0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,392 | INFO     | exeerrorcode: 0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,392 | INFO     | exeerrordiag: 
[2026-01-10 13:40:27] 2026-01-10 12:39:21,392 | INFO     | exitcode: 0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,392 | INFO     | exitmsg: OK
[2026-01-10 13:40:27] 2026-01-10 12:39:21,392 | INFO     | cpuconsumptiontime: 80942 s
[2026-01-10 13:40:27] 2026-01-10 12:39:21,392 | INFO     | nevents: 400
[2026-01-10 13:40:27] 2026-01-10 12:39:21,393 | INFO     | neventsw: 0
[2026-01-10 13:40:27] 2026-01-10 12:39:21,393 | INFO     | pid: 4584
[2026-01-10 13:40:27] 2026-01-10 12:39:21,393 | INFO     | pgrp: 4584
[2026-01-10 13:40:27] 2026-01-10 12:39:21,393 | INFO     | corecount: 8
[2026-01-10 13:40:27] 2026-01-10 12:39:21,393 | INFO     | event service: False
[2026-01-10 13:40:27] 2026-01-10 12:39:21,393 | INFO     | sizes: {0: 2283142, 1: 2283999, 8: 2284261, 12: 2284289, 18927: 2316320, 18932: 2325504, 19041: 2325642}
[2026-01-10 13:40:27] 2026-01-10 12:39:21,393 | INFO     | --------------------------------------------------
[2026-01-10 13:40:27] 2026-01-10 12:39:21,393 | INFO     | 
[2026-01-10 13:40:27] 2026-01-10 12:39:21,393 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2026-01-10 13:40:27] 2026-01-10 12:39:21,539 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,539 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,539 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,539 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,539 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,540 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,540 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,540 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,540 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,540 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,540 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,540 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,540 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,541 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,541 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,541 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,541 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,541 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:40:27] 2026-01-10 12:39:21,541 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,541 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:40:27] 2026-01-10 12:39:21,541 | INFO     | job 6963187027 has completed (purged errors)
[2026-01-10 13:40:27] 2026-01-10 12:39:21,542 | INFO     | overall cleanup function is called
[2026-01-10 13:40:27] 2026-01-10 12:39:22,550 | INFO     | --- collectZombieJob: --- 10, [4584]
[2026-01-10 13:40:27] 2026-01-10 12:39:22,551 | INFO     | zombie collector waiting for pid 4584
[2026-01-10 13:40:27] 2026-01-10 12:39:22,551 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:40:27] 2026-01-10 12:39:22,551 | INFO     | collected zombie processes
[2026-01-10 13:40:27] 2026-01-10 12:39:22,551 | INFO     | will attempt to kill all subprocesses of pid=4584
[2026-01-10 13:40:27] 2026-01-10 12:39:22,628 | INFO     | process IDs to be killed: [4584] (in reverse order)
[2026-01-10 13:40:27] 2026-01-10 12:39:23,515 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:40:27] 2026-01-10 12:39:23,516 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:40:27] 2026-01-10 12:39:23,518 | INFO     | did not find any defunct processes belonging to 4584
[2026-01-10 13:40:27] 2026-01-10 12:39:23,520 | INFO     | did not find any defunct processes belonging to 4584
[2026-01-10 13:40:27] 2026-01-10 12:39:23,520 | INFO     | ready for new job
[2026-01-10 13:40:27] 2026-01-10 12:39:23,520 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:40:27] 2026-01-10 12:39:23,522 | INFO     | ***************************************
[2026-01-10 13:40:27] 2026-01-10 12:39:23,522 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:40:27] 2026-01-10 12:39:23,522 | INFO     | ***************************************
[2026-01-10 13:40:27] 2026-01-10 12:39:23,523 | INFO     | 
[2026-01-10 13:40:27] 2026-01-10 12:39:23,523 | INFO     | pilot is running in a VM
[2026-01-10 13:40:27] 2026-01-10 12:39:23,523 | INFO     | architecture information:
[2026-01-10 13:40:27] 2026-01-10 12:39:23,527 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:40:27] 2026-01-10 12:39:23,647 | INFO     | cat /etc/os-release:
[2026-01-10 13:40:27] NAME="CentOS Linux"
[2026-01-10 13:40:27] VERSION="7 (Core)"
[2026-01-10 13:40:27] ID="centos"
[2026-01-10 13:40:27] ID_LIKE="rhel fedora"
[2026-01-10 13:40:27] VERSION_ID="7"
[2026-01-10 13:40:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:40:27] ANSI_COLOR="0;31"
[2026-01-10 13:40:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:40:27] HOME_URL="https://www.centos.org/"
[2026-01-10 13:40:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:40:27] 
[2026-01-10 13:40:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:40:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:40:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:40:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:40:27] 
[2026-01-10 13:40:27] 2026-01-10 12:39:23,648 | INFO     | ***************************************
[2026-01-10 13:40:27] 2026-01-10 12:39:24,152 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2026-01-10 13:40:27] 2026-01-10 12:39:24,354 | INFO     | sufficient remaining disk space (497543020544 B)
[2026-01-10 13:40:27] 2026-01-10 12:39:24,355 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:40:27] 2026-01-10 12:39:24,355 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:40:27] 2026-01-10 12:39:24,355 | INFO     | update_server=False
[2026-01-10 13:40:27] 2026-01-10 12:39:24,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:40:27] 2026-01-10 12:39:24,357 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:40:27] 2026-01-10 12:39:24,357 | INFO     | aborting loop
[2026-01-10 13:40:27] 2026-01-10 12:39:24,651 | INFO     | all payload control threads have been joined
[2026-01-10 13:40:27] 2026-01-10 12:39:25,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:40:27] 2026-01-10 12:39:25,362 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:25,363 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:25,407 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:25,407 | INFO     | all data control threads have been joined
[2026-01-10 13:40:27] 2026-01-10 12:39:25,519 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:25,658 | INFO     | [payload] control thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:25,720 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:26,029 | INFO     | all job control threads have been joined
[2026-01-10 13:40:27] 2026-01-10 12:39:26,256 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:40:27] 2026-01-10 12:39:26,346 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:26,386 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:40:27] 2026-01-10 12:39:26,391 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:26,414 | INFO     | [data] control thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:26,667 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:26,679 | INFO     | [job] validate thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:27,036 | INFO     | [job] control thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:27,283 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:27,392 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:30,266 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:35,130 | INFO     | job.realtimelogging is not enabled
[2026-01-10 13:40:27] 2026-01-10 12:39:36,137 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:40:27] 2026-01-10 12:39:53,868 | INFO     | PID=30542 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 13:40:27] 2026-01-10 12:39:53,868 | INFO     | .. there are 2 such processes running
[2026-01-10 13:40:27] 2026-01-10 12:39:53,869 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:40:27] 2026-01-10 12:39:53,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:40:27] 2026-01-10 12:39:53,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:40:27] 2026-01-10 12:40:14,831 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:40:27] 2026-01-10 12:40:16,817 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140586193958720)>', '<ExcThread(monitor, started 140585587422976)>']
[2026-01-10 13:40:27] 2026-01-10 12:40:17,006 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:40:27] 2026-01-10 12:40:17,007 | INFO     | [monitor] control thread has ended
[2026-01-10 13:40:27] 2026-01-10 12:40:21,842 | INFO     | all workflow threads have been joined
[2026-01-10 13:40:27] 2026-01-10 12:40:21,843 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:40:27] 2026-01-10 12:40:21,843 | INFO     | traces error code: 0
[2026-01-10 13:40:27] 2026-01-10 12:40:21,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:40:27] 2026-01-10 12:40:22,125 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:40:27] 2026-01-10 12:40:22,208 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:40:27] 2026-01-10 12:40:22,242 [wrapper] pilotpid: 30542
[2026-01-10 13:40:27] 2026-01-10 12:40:22,341 [wrapper] Pilot exit status: 0
[2026-01-10 13:40:27] 2026-01-10 12:40:22,879 [wrapper] pandaids: 6963187027
[2026-01-10 13:40:27] 2026-01-10 12:40:23,927 [wrapper] cleanup supervisor_pilot 23469 30543
[2026-01-10 13:40:27] 2026-01-10 12:40:24,029 [wrapper] Test setup, not cleaning
[2026-01-10 13:40:27] 2026-01-10 12:40:24,126 [wrapper] apfmon messages muted
[2026-01-10 13:40:27] 2026-01-10 12:40:24,243 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:40:27] 2026-01-10 12:40:24,350 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:40:27]  *** Error codes and diagnostics ***
[2026-01-10 13:40:27]     "exeErrorCode": 0,
[2026-01-10 13:40:27]     "exeErrorDiag": "",
[2026-01-10 13:40:27]     "pilotErrorCode": 0,
[2026-01-10 13:40:27]     "pilotErrorDiag": "",
[2026-01-10 13:40:27]  *** Listing of results directory ***
[2026-01-10 13:40:27] total 447264
[2026-01-10 13:40:27] -rwx------. 1 boinc boinc     36322 Jan  9 02:01 runpilot2-wrapper.sh
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc    579449 Jan  9 02:06 pilot3.tar.gz
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:06 queuedata.json
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc       100 Jan 10 08:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:40:27] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 08:21 run_atlas
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc       105 Jan 10 08:21 job.xml
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc      6391 Jan 10 08:21 init_data.xml
[2026-01-10 13:40:27] -rw-r--r--. 2 boinc boinc 227176220 Jan 10 08:21 EVNT.47898824._001416.pool.root.1
[2026-01-10 13:40:27] -rw-r--r--. 2 boinc boinc     15847 Jan 10 08:21 start_atlas.sh
[2026-01-10 13:40:27] drwxrwx--x. 2 boinc boinc        68 Jan 10 08:21 shared
[2026-01-10 13:40:27] -rw-r--r--. 2 boinc boinc    592395 Jan 10 08:21 input.tar.gz
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc         0 Jan 10 08:21 boinc_lockfile
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc      2519 Jan 10 08:21 pandaJob.out
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc    989374 Jan 10 08:21 agis_schedconf.cvmfs.json
[2026-01-10 13:40:27] drwx------. 5 boinc boinc      4096 Jan 10 08:21 pilot3
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc 220792953 Jan 10 13:36 HITS.47898826._036935.pool.root.1
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc       531 Jan 10 13:36 boinc_task_state.xml
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc      1032 Jan 10 13:37 memory_monitor_summary.json
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc   1516240 Jan 10 13:37 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc    516279 Jan 10 13:37 log.47898826._036935.job.log.tgz.1
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc        95 Jan 10 13:39 pilot_heartbeat.json
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc      7782 Jan 10 13:39 heartbeat.json
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc        28 Jan 10 13:40 wrapper_checkpoint.txt
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc      8192 Jan 10 13:40 boinc_mmap_file
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc      4957 Jan 10 13:40 pilotlog.txt
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc   2549095 Jan 10 13:40 log.47898826._036935.job.log.1
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc       357 Jan 10 13:40 output.list
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc       620 Jan 10 13:40 runtime_log
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc   3082240 Jan 10 13:40 result.tar.gz
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc      8833 Jan 10 13:40 runtime_log.err
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc       656 Jan 10 13:40 AEILDmv3Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmx3lKDmRAoabm.diag
[2026-01-10 13:40:27] -rw-r--r--. 1 boinc boinc     20695 Jan 10 13:40 stderr.txt
[2026-01-10 13:40:27] HITS file was successfully produced:
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc 220792953 Jan 10 13:36 shared/HITS.pool.root.1
[2026-01-10 13:40:27]  *** Contents of shared directory: ***
[2026-01-10 13:40:27] total 441080
[2026-01-10 13:40:27] -rw-r--r--. 2 boinc boinc 227176220 Jan 10 08:21 ATLAS.root_0
[2026-01-10 13:40:27] -rw-r--r--. 2 boinc boinc     15847 Jan 10 08:21 start_atlas.sh
[2026-01-10 13:40:27] -rw-r--r--. 2 boinc boinc    592395 Jan 10 08:21 input.tar.gz
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc 220792953 Jan 10 13:36 HITS.pool.root.1
[2026-01-10 13:40:27] -rw-------. 1 boinc boinc   3082240 Jan 10 13:40 result.tar.gz
13:40:29 (26831): run_atlas exited; CPU time 81115.703809
13:40:29 (26831): called boinc_finish(0)

</stderr_txt>
]]>

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