Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:22:20 (2248616): wrapper (7.7.26015): starting
18:22:20 (2248616): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 18:22:20] Arguments: --nthreads 8
[2026-01-09 18:22:20] Threads: 8
[2026-01-09 18:22:20] Checking for CVMFS
[2026-01-09 18:22:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:22:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:22:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:22:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:22:22] 2.13.3.0 7433 23537 197256 154961 1 105 32937878 40960000 15462 16776704 0 67651146 99.678 59917075 39332 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 18:22:22] CVMFS is ok
[2026-01-09 18:22:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:22:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:22:22] Further information can be found at the LHC@home message board.
[2026-01-09 18:22:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:22:22] Checking for apptainer binary...
[2026-01-09 18:22:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:22:22] Running /usr/bin/apptainer --version
[2026-01-09 18:22:22] apptainer version 1.4.5-2.el9
[2026-01-09 18:22:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:22:43] c-212-16.aglt2.org
[2026-01-09 18:22:43] apptainer works
[2026-01-09 18:22:43] Set ATHENA_PROC_NUMBER=8
[2026-01-09 18:22:43] Set ATHENA_CORE_NUMBER=8
[2026-01-09 18:22:43] Starting ATLAS job with PandaID=6963163327
[2026-01-09 18:22:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:11:54]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:11:54] 2026-01-10 03:11:08,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:11:54] 2026-01-10 03:11:09,690 | INFO     | time since job start (13665s) is within the limit (349056.0s)
[2026-01-09 22:11:54] 2026-01-10 03:11:10,974 | INFO     | monitor loop #888: job 0:6963163327 is in state 'finished'
[2026-01-09 22:11:54] 2026-01-10 03:11:10,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:11:54] 2026-01-10 03:11:11,697 | INFO     | time since job start (13667s) is within the limit (349056.0s)
[2026-01-09 22:11:54] 2026-01-10 03:11:13,492 | INFO     | monitor loop #889: job 0:6963163327 is in state 'finished'
[2026-01-09 22:11:54] 2026-01-10 03:11:13,492 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:11:54] 2026-01-10 03:11:13,704 | INFO     | time since job start (13669s) is within the limit (349056.0s)
[2026-01-09 22:11:54] 2026-01-10 03:11:14,913 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 22:11:54] 2026-01-10 03:11:14,927 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3305.541197916666
[2026-01-09 22:11:54] 2026-01-10 03:11:14,941 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6963163327/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 22:11:54] 2026-01-10 03:11:14,941 | INFO     | extracted standard info from prmon json
[2026-01-09 22:11:54] 2026-01-10 03:11:14,942 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 22:11:54] 2026-01-10 03:11:14,942 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 22:11:54] 2026-01-10 03:11:14,942 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 22:11:54] 2026-01-10 03:11:14,942 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 22:11:54] 2026-01-10 03:11:14,969 | INFO     | fitting pss+swap vs Time
[2026-01-09 22:11:54] 2026-01-10 03:11:14,970 | INFO     | sum of square deviations: 3392521395.1171074
[2026-01-09 22:11:54] 2026-01-10 03:11:14,971 | INFO     | sum of deviations: -34414811543.10809
[2026-01-09 22:11:54] 2026-01-10 03:11:14,971 | INFO     | mean x: 1768007852.6036036
[2026-01-09 22:11:54] 2026-01-10 03:11:14,971 | INFO     | mean y: 2564635.135135135
[2026-01-09 22:11:54] 2026-01-10 03:11:14,971 | INFO     | intersect: 17937796271.89476
[2026-01-09 22:11:54] 2026-01-10 03:11:14,971 | INFO     | chi2: 2.5010885230328506
[2026-01-09 22:11:54] 2026-01-10 03:11:14,972 | INFO     | sum of square deviations: 3168421882.562215
[2026-01-09 22:11:54] 2026-01-10 03:11:14,991 | INFO     | sum of deviations: -33920751375.83412
[2026-01-09 22:11:54] 2026-01-10 03:11:14,991 | INFO     | mean x: 1768007700.105991
[2026-01-09 22:11:54] 2026-01-10 03:11:14,991 | INFO     | mean y: 2564971.949308756
[2026-01-09 22:11:54] 2026-01-10 03:11:14,991 | INFO     | intersect: 18930647105.17767
[2026-01-09 22:11:54] 2026-01-10 03:11:14,991 | INFO     | chi2: 2.4946020012459513
[2026-01-09 22:11:54] 2026-01-10 03:11:14,992 | INFO     | current chi2=2.4946020012459513 (change=0.25934794898957036 %)
[2026-01-09 22:11:54] 2026-01-10 03:11:14,992 | INFO     | right removable region: 216
[2026-01-09 22:11:54] 2026-01-10 03:11:14,992 | INFO     | sum of square deviations: 3168407852.562215
[2026-01-09 22:11:54] 2026-01-10 03:11:14,993 | INFO     | sum of deviations: -78858270054.96317
[2026-01-09 22:11:54] 2026-01-10 03:11:14,993 | INFO     | mean x: 1768008005.105991
[2026-01-09 22:11:54] 2026-01-10 03:11:14,993 | INFO     | mean y: 2594631.4331797236
[2026-01-09 22:11:54] 2026-01-10 03:11:14,993 | INFO     | intersect: 44006415860.836365
[2026-01-09 22:11:54] 2026-01-10 03:11:14,993 | INFO     | chi2: 0.4532411994824411
[2026-01-09 22:11:54] 2026-01-10 03:11:14,993 | INFO     | current chi2=0.4532411994824411 (change=81.87824240091929 %)
[2026-01-09 22:11:54] 2026-01-10 03:11:14,994 | INFO     | sum of square deviations: 2954400880.7169704
[2026-01-09 22:11:54] 2026-01-10 03:11:14,995 | INFO     | sum of deviations: -72938075914.30193
[2026-01-09 22:11:54] 2026-01-10 03:11:15,015 | INFO     | mean x: 1768008157.6037736
[2026-01-09 22:11:54] 2026-01-10 03:11:15,015 | INFO     | mean y: 2590382.1273584906
[2026-01-09 22:11:54] 2026-01-10 03:11:15,015 | INFO     | intersect: 43651072231.04775
[2026-01-09 22:11:54] 2026-01-10 03:11:15,015 | INFO     | chi2: 0.44419630116066505
[2026-01-09 22:11:54] 2026-01-10 03:11:15,015 | INFO     | current chi2=0.44419630116066505 (change=1.9956037386063972 %)
[2026-01-09 22:11:54] 2026-01-10 03:11:15,015 | INFO     | left removable region: 20
[2026-01-09 22:11:54] 2026-01-10 03:11:15,016 | INFO     | sum of square deviations: 2334708039.1581492
[2026-01-09 22:11:54] 2026-01-10 03:11:15,016 | INFO     | sum of deviations: -52850776379.484695
[2026-01-09 22:11:54] 2026-01-10 03:11:15,016 | INFO     | mean x: 1768008279.5969388
[2026-01-09 22:11:54] 2026-01-10 03:11:15,017 | INFO     | mean y: 2576515.525510204
[2026-01-09 22:11:54] 2026-01-10 03:11:15,017 | INFO     | intersect: 40024972744.455345
[2026-01-09 22:11:54] 2026-01-10 03:11:15,017 | INFO     | chi2: 0.4014835453467892
[2026-01-09 22:11:54] 2026-01-10 03:11:15,017 | INFO     | current memory leak: -22.64 B/s (using 196 data points, chi2=0.40)
[2026-01-09 22:11:54] 2026-01-10 03:11:15,017 | INFO     | could have reported an average CPU frequency of 3359 MHz (11 samples)
[2026-01-09 22:11:54] 2026-01-10 03:11:15,017 | INFO     | ..............................
[2026-01-09 22:11:54] 2026-01-10 03:11:15,018 | INFO     | . Timing measurements:
[2026-01-09 22:11:54] 2026-01-10 03:11:15,018 | INFO     | . get job = 0 s
[2026-01-09 22:11:54] 2026-01-10 03:11:15,018 | INFO     | . initial setup = 2 s
[2026-01-09 22:11:54] 2026-01-10 03:11:15,018 | INFO     | . payload setup = 29 s
[2026-01-09 22:11:54] 2026-01-10 03:11:15,018 | INFO     | . stage-in = 0 s
[2026-01-09 22:11:54] 2026-01-10 03:11:15,018 | INFO     | . payload execution = 13563 s
[2026-01-09 22:11:54] 2026-01-10 03:11:15,018 | INFO     | . stage-out = 3 s
[2026-01-09 22:11:54] 2026-01-10 03:11:15,018 | INFO     | . log creation = 0 s
[2026-01-09 22:11:54] 2026-01-10 03:11:15,018 | INFO     | ..............................
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | 
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | job summary report
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | --------------------------------------------------
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | PanDA job id: 6963163327
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | task id: 47898826
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | errors: (none)
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | pilot state: finished 
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | transexitcode: 0
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | exeerrorcode: 0
[2026-01-09 22:11:54] 2026-01-10 03:11:15,494 | INFO     | exeerrordiag: 
[2026-01-09 22:11:54] 2026-01-10 03:11:15,495 | INFO     | exitcode: 0
[2026-01-09 22:11:54] 2026-01-10 03:11:15,495 | INFO     | exitmsg: OK
[2026-01-09 22:11:54] 2026-01-10 03:11:15,495 | INFO     | cpuconsumptiontime: 39776 s
[2026-01-09 22:11:54] 2026-01-10 03:11:15,495 | INFO     | nevents: 400
[2026-01-09 22:11:54] 2026-01-10 03:11:15,501 | INFO     | neventsw: 0
[2026-01-09 22:11:54] 2026-01-10 03:11:15,501 | INFO     | pid: 2265320
[2026-01-09 22:11:54] 2026-01-10 03:11:15,501 | INFO     | pgrp: 2265320
[2026-01-09 22:11:54] 2026-01-10 03:11:15,501 | INFO     | corecount: 8
[2026-01-09 22:11:54] 2026-01-10 03:11:15,501 | INFO     | event service: False
[2026-01-09 22:11:54] 2026-01-10 03:11:15,501 | INFO     | sizes: {0: 2283800, 1: 2283999, 11: 2283999, 22: 2284083, 23: 2284317, 34: 2284345, 13596: 2314704, 13601: 2323702, 13602: 2323758, 13615: 2323952}
[2026-01-09 22:11:54] 2026-01-10 03:11:15,501 | INFO     | --------------------------------------------------
[2026-01-09 22:11:54] 2026-01-10 03:11:15,501 | INFO     | 
[2026-01-09 22:11:54] 2026-01-10 03:11:15,501 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 22:11:54] 2026-01-10 03:11:15,547 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,547 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,547 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,547 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,547 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,548 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,548 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,548 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,548 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,548 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,550 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,550 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,550 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,550 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,550 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,551 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,551 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,551 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:11:54] 2026-01-10 03:11:15,551 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,551 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:11:54] 2026-01-10 03:11:15,551 | INFO     | job 6963163327 has completed (purged errors)
[2026-01-09 22:11:54] 2026-01-10 03:11:15,551 | INFO     | overall cleanup function is called
[2026-01-09 22:11:54] 2026-01-10 03:11:16,561 | INFO     | --- collectZombieJob: --- 10, [2265320]
[2026-01-09 22:11:54] 2026-01-10 03:11:16,561 | INFO     | zombie collector waiting for pid 2265320
[2026-01-09 22:11:54] 2026-01-10 03:11:16,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:11:54] 2026-01-10 03:11:16,561 | INFO     | collected zombie processes
[2026-01-09 22:11:54] 2026-01-10 03:11:16,561 | INFO     | will attempt to kill all subprocesses of pid=2265320
[2026-01-09 22:11:54] 2026-01-10 03:11:17,190 | INFO     | process IDs to be killed: [2265320] (in reverse order)
[2026-01-09 22:11:54] 2026-01-10 03:11:17,333 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:11:54] 2026-01-10 03:11:17,333 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:11:54] 2026-01-10 03:11:17,350 | INFO     | did not find any defunct processes belonging to 2265320
[2026-01-09 22:11:54] 2026-01-10 03:11:17,366 | INFO     | did not find any defunct processes belonging to 2265320
[2026-01-09 22:11:54] 2026-01-10 03:11:17,367 | INFO     | ready for new job
[2026-01-09 22:11:54] 2026-01-10 03:11:17,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:11:54] 2026-01-10 03:11:17,369 | INFO     | ***************************************
[2026-01-09 22:11:54] 2026-01-10 03:11:17,369 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:11:54] 2026-01-10 03:11:17,369 | INFO     | ***************************************
[2026-01-09 22:11:54] 2026-01-10 03:11:17,369 | INFO     | 
[2026-01-09 22:11:54] 2026-01-10 03:11:17,374 | INFO     | architecture information:
[2026-01-09 22:11:54] 2026-01-10 03:11:17,374 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:11:54] 2026-01-10 03:11:17,393 | INFO     | cat /etc/os-release:
[2026-01-09 22:11:54] NAME="CentOS Linux"
[2026-01-09 22:11:54] VERSION="7 (Core)"
[2026-01-09 22:11:54] ID="centos"
[2026-01-09 22:11:54] ID_LIKE="rhel fedora"
[2026-01-09 22:11:54] VERSION_ID="7"
[2026-01-09 22:11:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:11:54] ANSI_COLOR="0;31"
[2026-01-09 22:11:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:11:54] HOME_URL="https://www.centos.org/"
[2026-01-09 22:11:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:11:54] 
[2026-01-09 22:11:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:11:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:11:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:11:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:11:54] 
[2026-01-09 22:11:54] 2026-01-10 03:11:17,393 | INFO     | ***************************************
[2026-01-09 22:11:54] 2026-01-10 03:11:17,897 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 22:11:54] 2026-01-10 03:11:17,942 | INFO     | sufficient remaining disk space (128604700672 B)
[2026-01-09 22:11:54] 2026-01-10 03:11:17,943 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:11:54] 2026-01-10 03:11:17,943 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:11:54] 2026-01-10 03:11:17,943 | INFO     | update_server=False
[2026-01-09 22:11:54] 2026-01-10 03:11:17,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:11:54] 2026-01-10 03:11:17,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:11:54] 2026-01-10 03:11:17,944 | INFO     | aborting loop
[2026-01-09 22:11:54] 2026-01-10 03:11:18,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:11:54] 2026-01-10 03:11:18,143 | INFO     | all data control threads have been joined
[2026-01-09 22:11:54] 2026-01-10 03:11:18,185 | INFO     | all payload control threads have been joined
[2026-01-09 22:11:54] 2026-01-10 03:11:18,948 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:18,950 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:19,010 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:19,149 | INFO     | [data] control thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:19,190 | INFO     | [payload] control thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:19,308 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:19,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:11:54] 2026-01-10 03:11:19,459 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:19,475 | INFO     | [job] validate thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:19,566 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:19,623 | INFO     | all job control threads have been joined
[2026-01-09 22:11:54] 2026-01-10 03:11:19,790 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:20,191 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:20,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:11:54] 2026-01-10 03:11:20,629 | INFO     | [job] control thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:21,320 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:21,488 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:22,125 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:28,436 | INFO     | job.realtimelogging is not enabled
[2026-01-09 22:11:54] 2026-01-10 03:11:29,441 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:11:54] 2026-01-10 03:11:46,628 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:11:54] 2026-01-10 03:11:47,481 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139933086693184)>', '<ExcThread(monitor, started 139932796417792)>']
[2026-01-09 22:11:54] 2026-01-10 03:11:47,911 | INFO     | PID=2256316 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 22:11:54] 2026-01-10 03:11:47,912 | INFO     | .. there are 18 such processes running
[2026-01-09 22:11:54] 2026-01-10 03:11:47,915 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:11:54] 2026-01-10 03:11:47,915 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:11:54] 2026-01-10 03:11:47,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:11:54] 2026-01-10 03:11:47,916 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:11:54] 2026-01-10 03:11:47,916 | INFO     | [monitor] control thread has ended
[2026-01-09 22:11:54] 2026-01-10 03:11:52,607 | INFO     | all workflow threads have been joined
[2026-01-09 22:11:54] 2026-01-10 03:11:52,610 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:11:54] 2026-01-10 03:11:52,611 | INFO     | traces error code: 0
[2026-01-09 22:11:54] 2026-01-10 03:11:52,611 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:11:54] 2026-01-10 03:11:54,253 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:11:54] 2026-01-10 03:11:54,324 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:11:54] 2026-01-10 03:11:54,343 [wrapper] pilotpid: 2256316
[2026-01-09 22:11:54] 2026-01-10 03:11:54,345 [wrapper] Pilot exit status: 0
[2026-01-09 22:11:54] 2026-01-10 03:11:54,421 [wrapper] pandaids: 6963163327
[2026-01-09 22:11:54] 2026-01-10 03:11:54,632 [wrapper] cleanup supervisor_pilot 3170813 2256317
[2026-01-09 22:11:54] 2026-01-10 03:11:54,634 [wrapper] Test setup, not cleaning
[2026-01-09 22:11:54] 2026-01-10 03:11:54,640 [wrapper] apfmon messages muted
[2026-01-09 22:11:54] 2026-01-10 03:11:54,655 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:11:54] 2026-01-10 03:11:54,657 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:11:54]  *** Error codes and diagnostics ***
[2026-01-09 22:11:54]     "exeErrorCode": 0,
[2026-01-09 22:11:54]     "exeErrorDiag": "",
[2026-01-09 22:11:54]     "pilotErrorCode": 0,
[2026-01-09 22:11:54]     "pilotErrorDiag": "",
[2026-01-09 22:11:54]  *** Listing of results directory ***
[2026-01-09 22:11:54] total 439052
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 22:11:54] -rwx------. 1 boincer umatlas     36322 Jan  8 19:58 runpilot2-wrapper.sh
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:02 queuedata.json
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas       100 Jan  9 18:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:11:54] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 18:22 run_atlas
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas       105 Jan  9 18:22 job.xml
[2026-01-09 22:11:54] -rw-r--r--. 2 boincer umatlas 223580605 Jan  9 18:22 EVNT.47898824._001318.pool.root.1
[2026-01-09 22:11:54] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 18:22 start_atlas.sh
[2026-01-09 22:11:54] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 18:22 shared
[2026-01-09 22:11:54] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 18:22 input.tar.gz
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas         0 Jan  9 18:22 boinc_lockfile
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 18:22 pandaJob.out
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas        57 Jan  9 18:22 setup.sh.local
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas    989374 Jan  9 18:23 agis_schedconf.cvmfs.json
[2026-01-09 22:11:54] drwx------. 5 boincer umatlas      4096 Jan  9 18:23 pilot3
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas       530 Jan  9 22:09 boinc_task_state.xml
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas 217635894 Jan  9 22:09 HITS.47898826._034554.pool.root.1
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas      6955 Jan  9 22:10 init_data.xml
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas      1031 Jan  9 22:10 memory_monitor_summary.json
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas   1516240 Jan  9 22:10 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas    436479 Jan  9 22:11 log.47898826._034554.job.log.tgz.1
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas      7779 Jan  9 22:11 heartbeat.json
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 22:11 boinc_mmap_file
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas        28 Jan  9 22:11 wrapper_checkpoint.txt
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas        95 Jan  9 22:11 pilot_heartbeat.json
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas      4897 Jan  9 22:11 pilotlog.txt
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas   1791413 Jan  9 22:11 log.47898826._034554.job.log.1
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas       357 Jan  9 22:11 output.list
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas       620 Jan  9 22:11 runtime_log
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas   2242560 Jan  9 22:11 result.tar.gz
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 22:11 runtime_log.err
[2026-01-09 22:11:54] -rw-------. 1 boincer umatlas       655 Jan  9 22:11 MMlNDmA1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxigKDm80q8Ro.diag
[2026-01-09 22:11:54] -rw-r--r--. 1 boincer umatlas     21420 Jan  9 22:11 stderr.txt
[2026-01-09 22:11:55] HITS file was successfully produced:
[2026-01-09 22:11:55] -rw-------. 1 boincer umatlas 217635894 Jan  9 22:09 shared/HITS.pool.root.1
[2026-01-09 22:11:55]  *** Contents of shared directory: ***
[2026-01-09 22:11:55] total 433676
[2026-01-09 22:11:55] -rw-r--r--. 2 boincer umatlas 223580605 Jan  9 18:22 ATLAS.root_0
[2026-01-09 22:11:55] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 18:22 start_atlas.sh
[2026-01-09 22:11:55] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 18:22 input.tar.gz
[2026-01-09 22:11:55] -rw-------. 1 boincer umatlas 217635894 Jan  9 22:09 HITS.pool.root.1
[2026-01-09 22:11:55] -rw-------. 1 boincer umatlas   2242560 Jan  9 22:11 result.tar.gz
22:11:56 (2248616): run_atlas exited; CPU time 40270.734217
22:11:56 (2248616): called boinc_finish(0)

</stderr_txt>
]]>

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