Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:36:45 (400722): wrapper (7.7.26015): starting
02:36:45 (400722): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 02:36:45] Arguments: --nthreads 12
[2026-01-10 02:36:45] Threads: 12
[2026-01-10 02:36:45] Checking for CVMFS
[2026-01-10 02:36:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:36:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:36:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:36:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:36:46] 2.11.0.0 331953 2539 96388 154964 2 228 3475579 6144000 12959 130560 0 30330206 99.999 221597 282 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 02:36:46] CVMFS is ok
[2026-01-10 02:36:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:36:46] Checking for apptainer binary...
[2026-01-10 02:36:46] apptainer is not installed, using version from CVMFS
[2026-01-10 02:36:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:36:46] radiat0r
[2026-01-10 02:36:46] apptainer works
[2026-01-10 02:36:46] Set ATHENA_PROC_NUMBER=12
[2026-01-10 02:36:46] Set ATHENA_CORE_NUMBER=12
[2026-01-10 02:36:46] Starting ATLAS job with PandaID=6963186660
[2026-01-10 02:36:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/27 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 03:49:16]  *** The last 200 lines of the pilot log: ***
[2026-01-10 03:49:16] 2026-01-10 03:48:15,191 | INFO     | using path: /var/lib/boinc/slots/27/PanDA_Pilot-6963186660/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 03:49:16] 2026-01-10 03:48:15,191 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-10 03:49:16] 2026-01-10 03:48:15,192 | WARNING  | maxPSS not found in memory monitor output
[2026-01-10 03:49:16] 2026-01-10 03:48:15,192 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4198432 B
[2026-01-10 03:49:16] 2026-01-10 03:48:15,192 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15843 B
[2026-01-10 03:49:16] 2026-01-10 03:48:15,192 | INFO     | executing command: df -mP /var/lib/boinc/slots/27
[2026-01-10 03:49:16] 2026-01-10 03:48:15,222 | INFO     | sufficient remaining disk space (1709859405824 B)
[2026-01-10 03:49:16] 2026-01-10 03:48:15,222 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-10 03:49:16] 2026-01-10 03:48:15,223 | INFO     | size of work directory /var/lib/boinc/slots/27/PanDA_Pilot-6963186660: 4493476 B (within 4404019200 B limit)
[2026-01-10 03:49:16] 2026-01-10 03:48:15,223 | INFO     | pfn file=/var/lib/boinc/slots/27/PanDA_Pilot-6963186660/HITS.47898826._036636.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-10 03:49:16] 2026-01-10 03:48:15,224 | INFO     | total size of present files: 0 B (workdir size: 4493476 B)
[2026-01-10 03:49:16] 2026-01-10 03:48:15,224 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/27/PanDA_Pilot-6963186660/HITS.47898826._036636.pool.root.1 since it does not exist
[2026-01-10 03:49:16] 2026-01-10 03:48:15,227 | INFO     | time since job start (4272s) is within the limit (349056.0s)
[2026-01-10 03:49:16] 2026-01-10 03:48:15,265 | INFO     | job 6963186660 has state=finished
[2026-01-10 03:49:16] 2026-01-10 03:48:15,266 | INFO     | preparing for final server update for job 6963186660 in state='finished'
[2026-01-10 03:49:16] 2026-01-10 03:48:16,066 | INFO     | number of running child processes to parent process 413580: 1
[2026-01-10 03:49:16] 2026-01-10 03:48:16,066 | INFO     | maximum number of monitored processes: 6
[2026-01-10 03:49:16] 2026-01-10 03:48:17,234 | INFO     | time since job start (4274s) is within the limit (349056.0s)
[2026-01-10 03:49:16] 2026-01-10 03:48:17,987 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-10 03:49:16] 2026-01-10 03:48:17,987 | INFO     | this job has now completed (state=finished)
[2026-01-10 03:49:16] 2026-01-10 03:48:17,987 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 03:49:16] 2026-01-10 03:48:17,987 | INFO     | log transfer has been attempted: DONE
[2026-01-10 03:49:16] 2026-01-10 03:48:17,987 | INFO     | job 6963186660 has finished - writing final server update
[2026-01-10 03:49:16] 2026-01-10 03:48:17,988 | INFO     | total number of processed events: 400 (read)
[2026-01-10 03:49:16] 2026-01-10 03:48:17,990 | INFO     | executing command: lscpu
[2026-01-10 03:49:16] 2026-01-10 03:48:18,190 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 03:49:16] 2026-01-10 03:48:18,568 | INFO     | monitor loop #295: job 0:6963186660 is in state 'finished'
[2026-01-10 03:49:16] 2026-01-10 03:48:18,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 03:49:16] 2026-01-10 03:48:19,236 | INFO     | time since job start (4276s) is within the limit (349056.0s)
[2026-01-10 03:49:16] 2026-01-10 03:48:21,071 | INFO     | monitor loop #296: job 0:6963186660 is in state 'finished'
[2026-01-10 03:49:16] 2026-01-10 03:48:21,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 03:49:16] 2026-01-10 03:48:21,242 | INFO     | time since job start (4278s) is within the limit (349056.0s)
[2026-01-10 03:49:16] 2026-01-10 03:48:23,248 | INFO     | time since job start (4280s) is within the limit (349056.0s)
[2026-01-10 03:49:16] 2026-01-10 03:48:23,575 | INFO     | monitor loop #297: job 0:6963186660 is in state 'finished'
[2026-01-10 03:49:16] 2026-01-10 03:48:23,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 03:49:16] 2026-01-10 03:48:25,254 | INFO     | time since job start (4282s) is within the limit (349056.0s)
[2026-01-10 03:49:16] 2026-01-10 03:48:25,268 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 03:49:16] 2026-01-10 03:48:25,334 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2397.720484375001
[2026-01-10 03:49:16] 2026-01-10 03:48:25,433 | INFO     | using path: /var/lib/boinc/slots/27/PanDA_Pilot-6963186660/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 03:49:16] 2026-01-10 03:48:25,434 | INFO     | extracted standard info from prmon json
[2026-01-10 03:49:16] 2026-01-10 03:48:25,434 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 03:49:16] 2026-01-10 03:48:25,434 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 03:49:16] 2026-01-10 03:48:25,435 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 03:49:16] 2026-01-10 03:48:25,435 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 03:49:16] 2026-01-10 03:48:25,437 | INFO     | fitting pss+swap vs Time
[2026-01-10 03:49:16] 2026-01-10 03:48:25,437 | INFO     | sum of square deviations: 77515872.0
[2026-01-10 03:49:16] 2026-01-10 03:48:25,437 | INFO     | sum of deviations: -1244791254.0000005
[2026-01-10 03:49:16] 2026-01-10 03:48:25,438 | INFO     | mean x: 1768014854.0
[2026-01-10 03:49:16] 2026-01-10 03:48:25,438 | INFO     | mean y: 2690131.0634920634
[2026-01-10 03:49:16] 2026-01-10 03:48:25,438 | INFO     | intersect: 28394416501.64844
[2026-01-10 03:49:16] 2026-01-10 03:48:25,438 | INFO     | chi2: 0.029820700297167345
[2026-01-10 03:49:16] 2026-01-10 03:48:25,438 | INFO     | current memory leak: -16.06 B/s (using 63 data points, chi2=0.03)
[2026-01-10 03:49:16] 2026-01-10 03:48:25,438 | INFO     | could have reported an average CPU frequency of 2383 MHz (6 samples)
[2026-01-10 03:49:16] 2026-01-10 03:48:25,439 | INFO     | ..............................
[2026-01-10 03:49:16] 2026-01-10 03:48:25,439 | INFO     | . Timing measurements:
[2026-01-10 03:49:16] 2026-01-10 03:48:25,439 | INFO     | . get job = 0 s
[2026-01-10 03:49:16] 2026-01-10 03:48:25,439 | INFO     | . initial setup = 3 s
[2026-01-10 03:49:16] 2026-01-10 03:48:25,439 | INFO     | . payload setup = 9 s
[2026-01-10 03:49:16] 2026-01-10 03:48:25,439 | INFO     | . stage-in = 0 s
[2026-01-10 03:49:16] 2026-01-10 03:48:25,439 | INFO     | . payload execution = 4235 s
[2026-01-10 03:49:16] 2026-01-10 03:48:25,439 | INFO     | . stage-out = 0 s
[2026-01-10 03:49:16] 2026-01-10 03:48:25,439 | INFO     | . log creation = 0 s
[2026-01-10 03:49:16] 2026-01-10 03:48:25,440 | INFO     | ..............................
[2026-01-10 03:49:16] 2026-01-10 03:48:25,646 | INFO     | 
[2026-01-10 03:49:16] 2026-01-10 03:48:25,646 | INFO     | job summary report
[2026-01-10 03:49:16] 2026-01-10 03:48:25,647 | INFO     | --------------------------------------------------
[2026-01-10 03:49:16] 2026-01-10 03:48:25,647 | INFO     | PanDA job id: 6963186660
[2026-01-10 03:49:16] 2026-01-10 03:48:25,647 | INFO     | task id: 47898826
[2026-01-10 03:49:16] 2026-01-10 03:48:25,647 | INFO     | errors: (none)
[2026-01-10 03:49:16] 2026-01-10 03:48:25,647 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 03:49:16] 2026-01-10 03:48:25,647 | INFO     | pilot state: finished 
[2026-01-10 03:49:16] 2026-01-10 03:48:25,647 | INFO     | transexitcode: 0
[2026-01-10 03:49:16] 2026-01-10 03:48:25,647 | INFO     | exeerrorcode: 0
[2026-01-10 03:49:16] 2026-01-10 03:48:25,647 | INFO     | exeerrordiag: 
[2026-01-10 03:49:16] 2026-01-10 03:48:25,647 | INFO     | exitcode: 0
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | exitmsg: OK
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | cpuconsumptiontime: 44990 s
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | nevents: 400
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | neventsw: 0
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | pid: 413580
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | pgrp: 413580
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | corecount: 12
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | event service: False
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | sizes: {0: 2283801, 1: 2284000, 8: 2284262, 11: 2284290, 4248: 2310395, 4250: 2319395, 4252: 2319579, 4263: 2319801}
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | --------------------------------------------------
[2026-01-10 03:49:16] 2026-01-10 03:48:25,648 | INFO     | 
[2026-01-10 03:49:16] 2026-01-10 03:48:25,649 | INFO     | executing command: ls -lF /var/lib/boinc/slots/27
[2026-01-10 03:49:16] 2026-01-10 03:48:25,683 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,683 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,683 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,685 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,685 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,685 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,685 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 03:49:16] 2026-01-10 03:48:25,685 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,685 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 03:49:16] 2026-01-10 03:48:25,685 | INFO     | job 6963186660 has completed (purged errors)
[2026-01-10 03:49:16] 2026-01-10 03:48:25,685 | INFO     | overall cleanup function is called
[2026-01-10 03:49:16] 2026-01-10 03:48:26,695 | INFO     | --- collectZombieJob: --- 10, [413580]
[2026-01-10 03:49:16] 2026-01-10 03:48:26,696 | INFO     | zombie collector waiting for pid 413580
[2026-01-10 03:49:16] 2026-01-10 03:48:26,696 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 03:49:16] 2026-01-10 03:48:26,696 | INFO     | collected zombie processes
[2026-01-10 03:49:16] 2026-01-10 03:48:26,696 | INFO     | will attempt to kill all subprocesses of pid=413580
[2026-01-10 03:49:16] 2026-01-10 03:48:27,379 | INFO     | process IDs to be killed: [413580] (in reverse order)
[2026-01-10 03:49:16] 2026-01-10 03:48:27,651 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 03:49:16] 2026-01-10 03:48:27,651 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 03:49:16] 2026-01-10 03:48:27,679 | INFO     | did not find any defunct processes belonging to 413580
[2026-01-10 03:49:16] 2026-01-10 03:48:27,706 | INFO     | did not find any defunct processes belonging to 413580
[2026-01-10 03:49:16] 2026-01-10 03:48:27,707 | INFO     | ready for new job
[2026-01-10 03:49:16] 2026-01-10 03:48:27,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 03:49:16] 2026-01-10 03:48:27,709 | INFO     | ***************************************
[2026-01-10 03:49:16] 2026-01-10 03:48:27,709 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 03:49:16] 2026-01-10 03:48:27,709 | INFO     | ***************************************
[2026-01-10 03:49:16] 2026-01-10 03:48:27,709 | INFO     | 
[2026-01-10 03:49:16] 2026-01-10 03:48:27,745 | INFO     | architecture information:
[2026-01-10 03:49:16] 2026-01-10 03:48:27,745 | INFO     | executing command: cat /etc/os-release
[2026-01-10 03:49:16] 2026-01-10 03:48:27,769 | INFO     | cat /etc/os-release:
[2026-01-10 03:49:16] NAME="CentOS Linux"
[2026-01-10 03:49:16] VERSION="7 (Core)"
[2026-01-10 03:49:16] ID="centos"
[2026-01-10 03:49:16] ID_LIKE="rhel fedora"
[2026-01-10 03:49:16] VERSION_ID="7"
[2026-01-10 03:49:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 03:49:16] ANSI_COLOR="0;31"
[2026-01-10 03:49:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 03:49:16] HOME_URL="https://www.centos.org/"
[2026-01-10 03:49:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 03:49:16] 
[2026-01-10 03:49:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 03:49:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 03:49:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 03:49:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 03:49:16] 
[2026-01-10 03:49:16] 2026-01-10 03:48:27,769 | INFO     | ***************************************
[2026-01-10 03:49:16] 2026-01-10 03:48:28,273 | INFO     | executing command: df -mP /var/lib/boinc/slots/27
[2026-01-10 03:49:16] 2026-01-10 03:48:28,300 | INFO     | sufficient remaining disk space (1709760839680 B)
[2026-01-10 03:49:16] 2026-01-10 03:48:28,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 03:49:16] 2026-01-10 03:48:28,301 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 03:49:16] 2026-01-10 03:48:28,301 | INFO     | update_server=False
[2026-01-10 03:49:16] 2026-01-10 03:48:28,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 03:49:16] 2026-01-10 03:48:28,301 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 03:49:16] 2026-01-10 03:48:28,584 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 03:49:16] 2026-01-10 03:48:28,584 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 03:49:16] 2026-01-10 03:48:28,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:49:16] 2026-01-10 03:48:28,584 | INFO     | will abort loop
[2026-01-10 03:49:16] 2026-01-10 03:48:28,792 | INFO     | all payload control threads have been joined
[2026-01-10 03:49:16] 2026-01-10 03:48:29,300 | INFO     | all data control threads have been joined
[2026-01-10 03:49:16] 2026-01-10 03:48:29,307 | INFO     | [job] retrieve thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:29,351 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 03:49:16] 2026-01-10 03:48:29,444 | INFO     | [payload] validate_post thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:29,473 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:29,590 | INFO     | [job] job monitor thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:29,796 | INFO     | [payload] control thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:29,812 | INFO     | all job control threads have been joined
[2026-01-10 03:49:16] 2026-01-10 03:48:29,856 | INFO     | [job] validate thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:30,239 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:30,240 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:30,240 | INFO     | [data] copytool_in thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:30,265 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:30,304 | INFO     | [data] control thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:30,307 | INFO     | [data] copytool_out thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:30,471 | INFO     | [payload] failed_post thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:30,554 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:49:16] 2026-01-10 03:48:30,816 | INFO     | [job] control thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:31,559 | INFO     | [job] queue monitor thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:33,356 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 03:49:16] 2026-01-10 03:48:59,331 | INFO     | PID=405422 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 03:49:16] 2026-01-10 03:48:59,331 | INFO     | .. there are 16 such processes running
[2026-01-10 03:49:16] 2026-01-10 03:48:59,331 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 03:49:16] 2026-01-10 03:48:59,332 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 03:49:16] 2026-01-10 03:48:59,332 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 03:49:16] 2026-01-10 03:49:09,324 | INFO     | [monitor] cgroup control has ended
[2026-01-10 03:49:16] 2026-01-10 03:49:10,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140660162123584)>', '<ExcThread(monitor, started 140659507853056)>']
[2026-01-10 03:49:16] 2026-01-10 03:49:11,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 03:49:16] 2026-01-10 03:49:11,388 | INFO     | [monitor] control thread has ended
[2026-01-10 03:49:16] 2026-01-10 03:49:15,804 | INFO     | all workflow threads have been joined
[2026-01-10 03:49:16] 2026-01-10 03:49:15,804 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 03:49:16] 2026-01-10 03:49:15,804 | INFO     | traces error code: 0
[2026-01-10 03:49:16] 2026-01-10 03:49:15,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 03:49:16] 2026-01-10 03:49:15,951 [wrapper] ==== pilot stdout END ====
[2026-01-10 03:49:16] 2026-01-10 03:49:15,956 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 03:49:16] 2026-01-10 03:49:15,959 [wrapper] pilotpid: 405422
[2026-01-10 03:49:16] 2026-01-10 03:49:15,963 [wrapper] Pilot exit status: 0
[2026-01-10 03:49:16] 2026-01-10 03:49:15,978 [wrapper] pandaids: 6963186660
[2026-01-10 03:49:16] 2026-01-10 03:49:16,165 [wrapper] cleanup supervisor_pilot  780253 405423
[2026-01-10 03:49:16] 2026-01-10 03:49:16,169 [wrapper] Test setup, not cleaning
[2026-01-10 03:49:16] 2026-01-10 03:49:16,174 [wrapper] apfmon messages muted
[2026-01-10 03:49:16] 2026-01-10 03:49:16,177 [wrapper] ==== wrapper stdout END ====
[2026-01-10 03:49:16] 2026-01-10 03:49:16,181 [wrapper] ==== wrapper stderr END ====
[2026-01-10 03:49:16]  *** Error codes and diagnostics ***
[2026-01-10 03:49:16]     "exeErrorCode": 0,
[2026-01-10 03:49:16]     "exeErrorDiag": "",
[2026-01-10 03:49:16]     "pilotErrorCode": 0,
[2026-01-10 03:49:16]     "pilotErrorDiag": "",
[2026-01-10 03:49:16]  *** Listing of results directory ***
[2026-01-10 03:49:16] total 436696
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc    579449 Jan  9 00:57 pilot3.tar.gz
[2026-01-10 03:49:16] -rwx------ 1 boinc boinc     36322 Jan  9 01:01 runpilot2-wrapper.sh
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:06 queuedata.json
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc       100 Jan 10 02:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 03:49:16] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 02:36 run_atlas
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc       105 Jan 10 02:36 job.xml
[2026-01-10 03:49:16] -rw-r--r-- 2 boinc boinc 223830619 Jan 10 02:36 EVNT.47898824._001404.pool.root.1
[2026-01-10 03:49:16] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:36 start_atlas.sh
[2026-01-10 03:49:16] drwxrwx--x 2 boinc boinc      4096 Jan 10 02:36 shared
[2026-01-10 03:49:16] -rw-r--r-- 2 boinc boinc    592405 Jan 10 02:36 input.tar.gz
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc      9416 Jan 10 02:36 init_data.xml
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:36 boinc_setup_complete
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:36 boinc_lockfile
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc      2520 Jan 10 02:36 pandaJob.out
[2026-01-10 03:49:16] -rw------- 1 boinc boinc    989382 Jan 10 02:36 agis_schedconf.cvmfs.json
[2026-01-10 03:49:16] -rw------- 1 boinc boinc   1516240 Jan 10 02:37 agis_ddmendpoints.agis.ALL.json
[2026-01-10 03:49:16] drwx------ 5 boinc boinc      4096 Jan 10 02:37 pilot3
[2026-01-10 03:49:16] -rw------- 1 boinc boinc 217434262 Jan 10 03:47 HITS.47898826._036636.pool.root.1
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc       529 Jan 10 03:47 boinc_task_state.xml
[2026-01-10 03:49:16] -rw------- 1 boinc boinc      1027 Jan 10 03:48 memory_monitor_summary.json
[2026-01-10 03:49:16] -rw------- 1 boinc boinc        95 Jan 10 03:48 pilot_heartbeat.json
[2026-01-10 03:49:16] -rw------- 1 boinc boinc    380361 Jan 10 03:48 log.47898826._036636.job.log.tgz.1
[2026-01-10 03:49:16] -rw------- 1 boinc boinc      7746 Jan 10 03:48 heartbeat.json
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc        27 Jan 10 03:49 wrapper_checkpoint.txt
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc      8192 Jan 10 03:49 boinc_mmap_file
[2026-01-10 03:49:16] -rw------- 1 boinc boinc      5013 Jan 10 03:49 pilotlog.txt
[2026-01-10 03:49:16] -rw------- 1 boinc boinc    616918 Jan 10 03:49 log.47898826._036636.job.log.1
[2026-01-10 03:49:16] -rw------- 1 boinc boinc       357 Jan 10 03:49 output.list
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc       620 Jan 10 03:49 runtime_log
[2026-01-10 03:49:16] -rw------- 1 boinc boinc   1013760 Jan 10 03:49 result.tar.gz
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc      8788 Jan 10 03:49 runtime_log.err
[2026-01-10 03:49:16] -rw------- 1 boinc boinc       643 Jan 10 03:49 2b3LDmj3Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm51lKDm27tJBo.diag
[2026-01-10 03:49:16] -rw-r--r-- 1 boinc boinc     22164 Jan 10 03:49 stderr.txt
[2026-01-10 03:49:16] HITS file was successfully produced:
[2026-01-10 03:49:16] -rw------- 1 boinc boinc 217434262 Jan 10 03:47 shared/HITS.pool.root.1
[2026-01-10 03:49:16]  *** Contents of shared directory: ***
[2026-01-10 03:49:16] total 432524
[2026-01-10 03:49:16] -rw-r--r-- 2 boinc boinc 223830619 Jan 10 02:36 ATLAS.root_0
[2026-01-10 03:49:16] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:36 start_atlas.sh
[2026-01-10 03:49:16] -rw-r--r-- 2 boinc boinc    592405 Jan 10 02:36 input.tar.gz
[2026-01-10 03:49:16] -rw------- 1 boinc boinc 217434262 Jan 10 03:47 HITS.pool.root.1
[2026-01-10 03:49:16] -rw------- 1 boinc boinc   1013760 Jan 10 03:49 result.tar.gz
03:49:18 (400722): run_atlas exited; CPU time 45282.508159
03:49:18 (400722): called boinc_finish(0)

</stderr_txt>
]]>

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