Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:00:45 (586668): wrapper (7.7.26015): starting
03:00:45 (586668): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 03:00:45] Arguments: --nthreads 12
[2026-01-10 03:00:45] Threads: 12
[2026-01-10 03:00:45] Checking for CVMFS
[2026-01-10 03:00:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 03:00:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 03:00:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 03:00:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 03:00:45] 2.11.0.0 331953 2563 98124 154964 3 253 3475910 6144001 13149 130560 0 30788940 99.999 221605 282 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 03:00:45] CVMFS is ok
[2026-01-10 03:00:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 03:00:45] Checking for apptainer binary...
[2026-01-10 03:00:45] apptainer is not installed, using version from CVMFS
[2026-01-10 03:00:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 03:00:45] radiat0r
[2026-01-10 03:00:45] apptainer works
[2026-01-10 03:00:45] Set ATHENA_PROC_NUMBER=12
[2026-01-10 03:00:45] Set ATHENA_CORE_NUMBER=12
[2026-01-10 03:00:46] Starting ATLAS job with PandaID=6963163271
[2026-01-10 03:00:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:12:10]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:12:10]  storage_token=
[2026-01-10 04:12:10]  surl=/var/lib/boinc/slots/19/PanDA_Pilot-6963163271/log.47898826._034498.job.log.tgz.1
[2026-01-10 04:12:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/a3/log.47898826._034498.job.log.tgz.1
[2026-01-10 04:12:10]  workdir=None
[2026-01-10 04:12:10] ]
[2026-01-10 04:12:10] 2026-01-10 04:11:17,754 | INFO     | transferring file log.47898826._034498.job.log.tgz.1 from /var/lib/boinc/slots/19/PanDA_Pilot-6963163271/log.47898826._034498.job.log.tgz.1 to /var/lib/boinc/slots
[2026-01-10 04:12:10] 2026-01-10 04:11:17,755 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/19/PanDA_Pilot-6963163271/log.47898826._034498.job.log.tgz.1 /var/lib/boinc/slots/19/log.47898826._034498.j
[2026-01-10 04:12:10] 2026-01-10 04:11:17,778 | INFO     | adding to output.list: log.47898826._034498.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/a3/log.47898826._034498.job.log.tg
[2026-01-10 04:12:10] 2026-01-10 04:11:17,779 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 04:12:10] 2026-01-10 04:11:17,779 | INFO     | summary of transferred files:
[2026-01-10 04:12:10] 2026-01-10 04:11:17,779 | INFO     |  -- lfn=log.47898826._034498.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 04:12:10] 2026-01-10 04:11:17,780 | INFO     | stage-out finished correctly
[2026-01-10 04:12:10] 2026-01-10 04:11:17,990 | WARNING  | process 599620 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 04:12:10] 2026-01-10 04:11:17,991 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6963163271/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:12:10] 2026-01-10 04:11:19,068 | INFO     | PID=591410 has CPU usage=19.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 04:12:10] 2026-01-10 04:11:19,068 | INFO     | .. there are 11 such processes running
[2026-01-10 04:12:10] 2026-01-10 04:11:19,097 | INFO     | number of running child processes to parent process 599620: 1
[2026-01-10 04:12:10] 2026-01-10 04:11:19,097 | INFO     | maximum number of monitored processes: 6
[2026-01-10 04:12:10] 2026-01-10 04:11:20,069 | INFO     | time since job start (4222s) is within the limit (349056.0s)
[2026-01-10 04:12:10] 2026-01-10 04:11:20,162 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 04:12:10] 2026-01-10 04:11:21,600 | INFO     | monitor loop #291: job 0:6963163271 is in state 'finished'
[2026-01-10 04:12:10] 2026-01-10 04:11:21,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 04:12:10] 2026-01-10 04:11:22,072 | INFO     | time since job start (4224s) is within the limit (349056.0s)
[2026-01-10 04:12:10] 2026-01-10 04:11:22,565 | INFO     | job 6963163271 has state=finished
[2026-01-10 04:12:10] 2026-01-10 04:11:22,566 | INFO     | preparing for final server update for job 6963163271 in state='finished'
[2026-01-10 04:12:10] 2026-01-10 04:11:22,566 | INFO     | this job has now completed (state=finished)
[2026-01-10 04:12:10] 2026-01-10 04:11:22,566 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 04:12:10] 2026-01-10 04:11:22,566 | INFO     | log transfer has been attempted: DONE
[2026-01-10 04:12:10] 2026-01-10 04:11:22,566 | INFO     | job 6963163271 has finished - writing final server update
[2026-01-10 04:12:10] 2026-01-10 04:11:22,567 | INFO     | total number of processed events: 400 (read)
[2026-01-10 04:12:10] 2026-01-10 04:11:22,569 | INFO     | executing command: lscpu
[2026-01-10 04:12:10] 2026-01-10 04:11:22,717 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 04:12:10] 2026-01-10 04:11:24,078 | INFO     | time since job start (4226s) is within the limit (349056.0s)
[2026-01-10 04:12:10] 2026-01-10 04:11:24,103 | INFO     | monitor loop #292: job 0:6963163271 is in state 'finished'
[2026-01-10 04:12:10] 2026-01-10 04:11:24,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 04:12:10] 2026-01-10 04:11:26,080 | INFO     | time since job start (4228s) is within the limit (349056.0s)
[2026-01-10 04:12:10] 2026-01-10 04:11:26,606 | INFO     | monitor loop #293: job 0:6963163271 is in state 'finished'
[2026-01-10 04:12:10] 2026-01-10 04:11:26,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 04:12:10] 2026-01-10 04:11:27,371 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 04:12:10] 2026-01-10 04:11:27,418 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2291.7251210937497
[2026-01-10 04:12:10] 2026-01-10 04:11:27,451 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6963163271/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:12:10] 2026-01-10 04:11:27,451 | INFO     | extracted standard info from prmon json
[2026-01-10 04:12:10] 2026-01-10 04:11:27,451 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 04:12:10] 2026-01-10 04:11:27,451 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 04:12:10] 2026-01-10 04:11:27,452 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 04:12:10] 2026-01-10 04:11:27,452 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 04:12:10] 2026-01-10 04:11:27,453 | INFO     | fitting pss+swap vs Time
[2026-01-10 04:12:10] 2026-01-10 04:11:27,454 | INFO     | sum of square deviations: 73882315.5
[2026-01-10 04:12:10] 2026-01-10 04:11:27,454 | INFO     | sum of deviations: 1097121051.0
[2026-01-10 04:12:10] 2026-01-10 04:11:27,454 | INFO     | mean x: 1768016256.5
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | mean y: 2652044.9677419355
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | intersect: -26251639531.970795
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | chi2: 0.0010980736643940803
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | current memory leak: 14.85 B/s (using 62 data points, chi2=0.00)
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | could have reported an average CPU frequency of 2337 MHz (6 samples)
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | ..............................
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | . Timing measurements:
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | . get job = 0 s
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | . initial setup = 1 s
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | . payload setup = 7 s
[2026-01-10 04:12:10] 2026-01-10 04:11:27,455 | INFO     | . stage-in = 0 s
[2026-01-10 04:12:10] 2026-01-10 04:11:27,456 | INFO     | . payload execution = 4188 s
[2026-01-10 04:12:10] 2026-01-10 04:11:27,456 | INFO     | . stage-out = 1 s
[2026-01-10 04:12:10] 2026-01-10 04:11:27,456 | INFO     | . log creation = 0 s
[2026-01-10 04:12:10] 2026-01-10 04:11:27,456 | INFO     | ..............................
[2026-01-10 04:12:10] 2026-01-10 04:11:27,519 | INFO     | 
[2026-01-10 04:12:10] 2026-01-10 04:11:27,522 | INFO     | job summary report
[2026-01-10 04:12:10] 2026-01-10 04:11:27,522 | INFO     | --------------------------------------------------
[2026-01-10 04:12:10] 2026-01-10 04:11:27,522 | INFO     | PanDA job id: 6963163271
[2026-01-10 04:12:10] 2026-01-10 04:11:27,522 | INFO     | task id: 47898826
[2026-01-10 04:12:10] 2026-01-10 04:11:27,522 | INFO     | errors: (none)
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | pilot state: finished 
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | transexitcode: 0
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | exeerrorcode: 0
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | exeerrordiag: 
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | exitcode: 0
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | exitmsg: OK
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | cpuconsumptiontime: 46338 s
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | nevents: 400
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | neventsw: 0
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | pid: 599620
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | pgrp: 599620
[2026-01-10 04:12:10] 2026-01-10 04:11:27,523 | INFO     | corecount: 12
[2026-01-10 04:12:10] 2026-01-10 04:11:27,524 | INFO     | event service: False
[2026-01-10 04:12:10] 2026-01-10 04:11:27,524 | INFO     | sizes: {0: 2283143, 1: 2284000, 7: 2284262, 12: 2284290, 4199: 2310427, 4201: 2319427, 4204: 2319611, 4211: 2319805}
[2026-01-10 04:12:10] 2026-01-10 04:11:27,524 | INFO     | --------------------------------------------------
[2026-01-10 04:12:10] 2026-01-10 04:11:27,524 | INFO     | 
[2026-01-10 04:12:10] 2026-01-10 04:11:27,524 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2026-01-10 04:12:10] 2026-01-10 04:11:27,551 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,551 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,551 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,551 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,553 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 04:12:10] 2026-01-10 04:11:27,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,553 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 04:12:10] 2026-01-10 04:11:27,553 | INFO     | job 6963163271 has completed (purged errors)
[2026-01-10 04:12:10] 2026-01-10 04:11:27,553 | INFO     | overall cleanup function is called
[2026-01-10 04:12:10] 2026-01-10 04:11:28,560 | INFO     | --- collectZombieJob: --- 10, [599620]
[2026-01-10 04:12:10] 2026-01-10 04:11:28,560 | INFO     | zombie collector waiting for pid 599620
[2026-01-10 04:12:10] 2026-01-10 04:11:28,560 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 04:12:10] 2026-01-10 04:11:28,560 | INFO     | collected zombie processes
[2026-01-10 04:12:10] 2026-01-10 04:11:28,560 | INFO     | will attempt to kill all subprocesses of pid=599620
[2026-01-10 04:12:10] 2026-01-10 04:11:29,025 | INFO     | process IDs to be killed: [599620] (in reverse order)
[2026-01-10 04:12:10] 2026-01-10 04:11:29,190 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:12:10] 2026-01-10 04:11:29,190 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:12:10] 2026-01-10 04:11:29,208 | INFO     | did not find any defunct processes belonging to 599620
[2026-01-10 04:12:10] 2026-01-10 04:11:29,221 | INFO     | did not find any defunct processes belonging to 599620
[2026-01-10 04:12:10] 2026-01-10 04:11:29,222 | INFO     | ready for new job
[2026-01-10 04:12:10] 2026-01-10 04:11:29,222 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:12:10] 2026-01-10 04:11:29,224 | INFO     | ***************************************
[2026-01-10 04:12:10] 2026-01-10 04:11:29,225 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:12:10] 2026-01-10 04:11:29,225 | INFO     | ***************************************
[2026-01-10 04:12:10] 2026-01-10 04:11:29,225 | INFO     | 
[2026-01-10 04:12:10] 2026-01-10 04:11:29,260 | INFO     | architecture information:
[2026-01-10 04:12:10] 2026-01-10 04:11:29,260 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:12:10] 2026-01-10 04:11:29,275 | INFO     | cat /etc/os-release:
[2026-01-10 04:12:10] NAME="CentOS Linux"
[2026-01-10 04:12:10] VERSION="7 (Core)"
[2026-01-10 04:12:10] ID="centos"
[2026-01-10 04:12:10] ID_LIKE="rhel fedora"
[2026-01-10 04:12:10] VERSION_ID="7"
[2026-01-10 04:12:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:12:10] ANSI_COLOR="0;31"
[2026-01-10 04:12:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:12:10] HOME_URL="https://www.centos.org/"
[2026-01-10 04:12:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:12:10] 
[2026-01-10 04:12:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:12:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:12:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:12:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:12:10] 
[2026-01-10 04:12:10] 2026-01-10 04:11:29,276 | INFO     | ***************************************
[2026-01-10 04:12:10] 2026-01-10 04:11:29,779 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2026-01-10 04:12:10] 2026-01-10 04:11:29,805 | INFO     | sufficient remaining disk space (1707103748096 B)
[2026-01-10 04:12:10] 2026-01-10 04:11:29,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:12:10] 2026-01-10 04:11:29,805 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:12:10] 2026-01-10 04:11:29,805 | INFO     | update_server=False
[2026-01-10 04:12:10] 2026-01-10 04:11:29,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:12:10] 2026-01-10 04:11:30,101 | INFO     | all payload control threads have been joined
[2026-01-10 04:12:10] 2026-01-10 04:11:30,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:12:10] 2026-01-10 04:11:30,113 | INFO     | aborting loop
[2026-01-10 04:12:10] 2026-01-10 04:11:30,723 | INFO     | all job control threads have been joined
[2026-01-10 04:12:10] 2026-01-10 04:11:30,754 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:12:10] 2026-01-10 04:11:30,805 | INFO     | all data control threads have been joined
[2026-01-10 04:12:10] 2026-01-10 04:11:30,811 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:30,859 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:12:10] 2026-01-10 04:11:31,087 | INFO     | [job] validate thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:31,107 | INFO     | [payload] control thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:31,118 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:31,278 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:31,375 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:31,456 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:31,690 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:31,729 | INFO     | [job] control thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:31,774 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:31,811 | INFO     | [data] control thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:31,949 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:32,204 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:32,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:12:10] 2026-01-10 04:11:32,864 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:33,533 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:11:34,760 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:12:10] 2026-01-10 04:12:00,756 | INFO     | PID=591410 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 04:12:10] 2026-01-10 04:12:00,757 | INFO     | .. there are 7 such processes running
[2026-01-10 04:12:10] 2026-01-10 04:12:00,757 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:12:10] 2026-01-10 04:12:00,757 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:12:10] 2026-01-10 04:12:00,757 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:12:10] 2026-01-10 04:12:04,436 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:12:10] 2026-01-10 04:12:04,565 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140528811116352)>', '<ExcThread(monitor, started 140528226129664)>']
[2026-01-10 04:12:10] 2026-01-10 04:12:04,777 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:12:10] 2026-01-10 04:12:04,777 | INFO     | [monitor] control thread has ended
[2026-01-10 04:12:10] 2026-01-10 04:12:09,584 | INFO     | all workflow threads have been joined
[2026-01-10 04:12:10] 2026-01-10 04:12:09,586 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:12:10] 2026-01-10 04:12:09,587 | INFO     | traces error code: 0
[2026-01-10 04:12:10] 2026-01-10 04:12:09,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:12:10] 2026-01-10 04:12:09,739 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:12:10] 2026-01-10 04:12:09,742 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:12:10] 2026-01-10 04:12:09,746 [wrapper] pilotpid: 591410
[2026-01-10 04:12:10] 2026-01-10 04:12:09,750 [wrapper] Pilot exit status: 0
[2026-01-10 04:12:10] 2026-01-10 04:12:09,766 [wrapper] pandaids: 6963163271
[2026-01-10 04:12:10] 2026-01-10 04:12:09,886 [wrapper] cleanup supervisor_pilot  822399 591411
[2026-01-10 04:12:10] 2026-01-10 04:12:09,891 [wrapper] Test setup, not cleaning
[2026-01-10 04:12:10] 2026-01-10 04:12:09,896 [wrapper] apfmon messages muted
[2026-01-10 04:12:10] 2026-01-10 04:12:09,900 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:12:10] 2026-01-10 04:12:09,903 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:12:10]  *** Error codes and diagnostics ***
[2026-01-10 04:12:10]     "exeErrorCode": 0,
[2026-01-10 04:12:10]     "exeErrorDiag": "",
[2026-01-10 04:12:10]     "pilotErrorCode": 0,
[2026-01-10 04:12:10]     "pilotErrorDiag": "",
[2026-01-10 04:12:10]  *** Listing of results directory ***
[2026-01-10 04:12:10] total 437320
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc    579449 Jan  9 00:57 pilot3.tar.gz
[2026-01-10 04:12:10] -rwx------ 1 boinc boinc     36322 Jan  9 00:58 runpilot2-wrapper.sh
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:02 queuedata.json
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc       100 Jan 10 03:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:12:10] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 03:00 run_atlas
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc       105 Jan 10 03:00 job.xml
[2026-01-10 04:12:10] -rw-r--r-- 2 boinc boinc 225718190 Jan 10 03:00 EVNT.47898824._001315.pool.root.1
[2026-01-10 04:12:10] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:00 start_atlas.sh
[2026-01-10 04:12:10] drwxrwx--x 2 boinc boinc      4096 Jan 10 03:00 shared
[2026-01-10 04:12:10] -rw-r--r-- 2 boinc boinc    592401 Jan 10 03:00 input.tar.gz
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc      9416 Jan 10 03:00 init_data.xml
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:00 boinc_setup_complete
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:00 boinc_lockfile
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc      2520 Jan 10 03:00 pandaJob.out
[2026-01-10 04:12:10] -rw------- 1 boinc boinc    989382 Jan 10 03:00 agis_schedconf.cvmfs.json
[2026-01-10 04:12:10] -rw------- 1 boinc boinc   1516240 Jan 10 03:00 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:12:10] drwx------ 5 boinc boinc      4096 Jan 10 03:00 pilot3
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc       529 Jan 10 04:10 boinc_task_state.xml
[2026-01-10 04:12:10] -rw------- 1 boinc boinc 216171106 Jan 10 04:10 HITS.47898826._034498.pool.root.1
[2026-01-10 04:12:10] -rw------- 1 boinc boinc        95 Jan 10 04:11 pilot_heartbeat.json
[2026-01-10 04:12:10] -rw------- 1 boinc boinc      1029 Jan 10 04:11 memory_monitor_summary.json
[2026-01-10 04:12:10] -rw------- 1 boinc boinc    396396 Jan 10 04:11 log.47898826._034498.job.log.tgz.1
[2026-01-10 04:12:10] -rw------- 1 boinc boinc      7743 Jan 10 04:11 heartbeat.json
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc      8192 Jan 10 04:12 boinc_mmap_file
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc        27 Jan 10 04:12 wrapper_checkpoint.txt
[2026-01-10 04:12:10] -rw------- 1 boinc boinc      4825 Jan 10 04:12 pilotlog.txt
[2026-01-10 04:12:10] -rw------- 1 boinc boinc    609541 Jan 10 04:12 log.47898826._034498.job.log.1
[2026-01-10 04:12:10] -rw------- 1 boinc boinc       357 Jan 10 04:12 output.list
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc       620 Jan 10 04:12 runtime_log
[2026-01-10 04:12:10] -rw------- 1 boinc boinc   1024000 Jan 10 04:12 result.tar.gz
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc      8788 Jan 10 04:12 runtime_log.err
[2026-01-10 04:12:10] -rw------- 1 boinc boinc       643 Jan 10 04:12 Iy6MDmA1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWigKDmwCkXEm.diag
[2026-01-10 04:12:10] -rw-r--r-- 1 boinc boinc     22068 Jan 10 04:12 stderr.txt
[2026-01-10 04:12:10] HITS file was successfully produced:
[2026-01-10 04:12:10] -rw------- 1 boinc boinc 216171106 Jan 10 04:10 shared/HITS.pool.root.1
[2026-01-10 04:12:10]  *** Contents of shared directory: ***
[2026-01-10 04:12:10] total 433140
[2026-01-10 04:12:10] -rw-r--r-- 2 boinc boinc 225718190 Jan 10 03:00 ATLAS.root_0
[2026-01-10 04:12:10] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:00 start_atlas.sh
[2026-01-10 04:12:10] -rw-r--r-- 2 boinc boinc    592401 Jan 10 03:00 input.tar.gz
[2026-01-10 04:12:10] -rw------- 1 boinc boinc 216171106 Jan 10 04:10 HITS.pool.root.1
[2026-01-10 04:12:10] -rw------- 1 boinc boinc   1024000 Jan 10 04:12 result.tar.gz
04:12:11 (586668): run_atlas exited; CPU time 46603.184578
04:12:11 (586668): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN