Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:07:04 (2963355): wrapper (7.7.26015): starting
11:07:04 (2963355): wrapper: running run_atlas (--nthreads 6)
[2026-01-10 11:07:04] Arguments: --nthreads 6
[2026-01-10 11:07:04] Threads: 6
[2026-01-10 11:07:04] Checking for CVMFS
[2026-01-10 11:07:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:07:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:07:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:07:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:07:04] 2.13.3.0 2126625 1250 78072 154963 1 253 47025936 52428801 1858 130560 0 2694164 99.996 44107 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 11:07:04] CVMFS is ok
[2026-01-10 11:07:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:07:04] Checking for apptainer binary...
[2026-01-10 11:07:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:07:04] Running /usr/bin/apptainer --version
[2026-01-10 11:07:04] apptainer version 1.4.4-1.el9
[2026-01-10 11:07:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:07:04] testio008
[2026-01-10 11:07:04] apptainer works
[2026-01-10 11:07:04] Set ATHENA_PROC_NUMBER=6
[2026-01-10 11:07:04] Set ATHENA_CORE_NUMBER=6
[2026-01-10 11:07:04] Starting ATLAS job with PandaID=6963168840
[2026-01-10 11:07:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:49:29]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:49:29] 2026-01-10 03:47:58,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:47:59,265 | INFO     | time since job start (6046s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:01,034 | INFO     | monitor loop #461: job 0:6963168840 is in state 'finished'
[2026-01-10 12:49:29] 2026-01-10 03:48:01,034 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:48:01,271 | INFO     | time since job start (6048s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:03,275 | INFO     | time since job start (6050s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:03,537 | INFO     | monitor loop #462: job 0:6963168840 is in state 'finished'
[2026-01-10 12:49:29] 2026-01-10 03:48:03,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:48:05,281 | INFO     | time since job start (6052s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:06,040 | INFO     | monitor loop #463: job 0:6963168840 is in state 'finished'
[2026-01-10 12:49:29] 2026-01-10 03:48:06,040 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:48:06,325 | INFO     | PID=2967150 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:49:29] 2026-01-10 03:48:06,325 | INFO     | .. there are 2 such processes running
[2026-01-10 12:49:29] 2026-01-10 03:48:07,325 | INFO     | time since job start (6054s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:08,542 | INFO     | monitor loop #464: job 0:6963168840 is in state 'finished'
[2026-01-10 12:49:29] 2026-01-10 03:48:08,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:48:09,330 | INFO     | time since job start (6056s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:11,045 | INFO     | monitor loop #465: job 0:6963168840 is in state 'finished'
[2026-01-10 12:49:29] 2026-01-10 03:48:11,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:48:11,336 | INFO     | time since job start (6058s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:13,341 | INFO     | time since job start (6060s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:13,546 | INFO     | monitor loop #466: job 0:6963168840 is in state 'finished'
[2026-01-10 12:49:29] 2026-01-10 03:48:13,547 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:48:15,346 | INFO     | time since job start (6062s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:16,049 | INFO     | monitor loop #467: job 0:6963168840 is in state 'finished'
[2026-01-10 12:49:29] 2026-01-10 03:48:16,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:48:17,352 | INFO     | time since job start (6064s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:18,552 | INFO     | monitor loop #468: job 0:6963168840 is in state 'finished'
[2026-01-10 12:49:29] 2026-01-10 03:48:18,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:48:19,357 | INFO     | time since job start (6066s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:21,054 | INFO     | monitor loop #469: job 0:6963168840 is in state 'finished'
[2026-01-10 12:49:29] 2026-01-10 03:48:21,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:48:21,363 | INFO     | time since job start (6068s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:23,368 | INFO     | time since job start (6070s) is within the limit (349056.0s)
[2026-01-10 12:49:29] 2026-01-10 03:48:23,368 | INFO     | 6075s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-10 12:49:29] 2026-01-10 03:48:23,557 | INFO     | monitor loop #470: job 0:6963168840 is in state 'finished'
[2026-01-10 12:49:29] 2026-01-10 03:48:23,557 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:49:29] 2026-01-10 03:48:24,605 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 12:49:29] 2026-01-10 03:48:24,606 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4279.997549999999
[2026-01-10 12:49:29] 2026-01-10 03:48:24,607 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6963168840/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:49:29] 2026-01-10 03:48:24,608 | INFO     | extracted standard info from prmon json
[2026-01-10 12:49:29] 2026-01-10 03:48:24,608 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:49:29] 2026-01-10 03:48:24,608 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:49:29] 2026-01-10 03:48:24,608 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 12:49:29] 2026-01-10 03:48:24,608 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | sum of square deviations: 233641590.0
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | sum of deviations: 938425219.9999999
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | mean x: 1768013902.0
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | mean y: 2449145.2197802197
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | intersect: -7098807249.018113
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | chi2: 0.016091208620145018
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | current memory leak: 4.02 B/s (using 91 data points, chi2=0.02)
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | could have reported an average CPU frequency of 3298 MHz (7 samples)
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | ..............................
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | . Timing measurements:
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | . get job = 0 s
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | . initial setup = 5 s
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | . payload setup = 2 s
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | . stage-in = 0 s
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | . payload execution = 5971 s
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | . stage-out = 0 s
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | . log creation = 0 s
[2026-01-10 12:49:29] 2026-01-10 03:48:24,609 | INFO     | ..............................
[2026-01-10 12:49:29] 2026-01-10 03:48:24,643 | INFO     | 
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | job summary report
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | --------------------------------------------------
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | PanDA job id: 6963168840
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | task id: 47898826
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | errors: (none)
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | pilot state: finished 
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | transexitcode: 0
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | exeerrorcode: 0
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | exeerrordiag: 
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | exitcode: 0
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | exitmsg: OK
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | cpuconsumptiontime: 32849 s
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | nevents: 400
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | neventsw: 0
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | pid: 2973868
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | pgrp: 2973868
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | corecount: 6
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | event service: False
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | sizes: {0: 2283970, 2: 2284232, 11: 2284260, 5977: 2311040, 5978: 2320093, 5981: 2320093, 6058: 2320415}
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | --------------------------------------------------
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | 
[2026-01-10 12:49:29] 2026-01-10 03:48:24,644 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-10 12:49:29] 2026-01-10 03:48:24,652 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | job 6963168840 has completed (purged errors)
[2026-01-10 12:49:29] 2026-01-10 03:48:24,653 | INFO     | overall cleanup function is called
[2026-01-10 12:49:29] 2026-01-10 03:48:25,659 | INFO     | --- collectZombieJob: --- 10, [2973868]
[2026-01-10 12:49:29] 2026-01-10 03:48:25,659 | INFO     | zombie collector waiting for pid 2973868
[2026-01-10 12:49:29] 2026-01-10 03:48:25,659 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:49:29] 2026-01-10 03:48:25,659 | INFO     | collected zombie processes
[2026-01-10 12:49:29] 2026-01-10 03:48:25,659 | INFO     | will attempt to kill all subprocesses of pid=2973868
[2026-01-10 12:49:29] 2026-01-10 03:48:25,692 | INFO     | process IDs to be killed: [2973868] (in reverse order)
[2026-01-10 12:49:29] 2026-01-10 03:48:25,708 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:49:29] 2026-01-10 03:48:25,708 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:49:29] 2026-01-10 03:48:25,710 | INFO     | did not find any defunct processes belonging to 2973868
[2026-01-10 12:49:29] 2026-01-10 03:48:25,711 | INFO     | did not find any defunct processes belonging to 2973868
[2026-01-10 12:49:29] 2026-01-10 03:48:25,711 | INFO     | ready for new job
[2026-01-10 12:49:29] 2026-01-10 03:48:25,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:49:29] 2026-01-10 03:48:25,712 | INFO     | ***************************************
[2026-01-10 12:49:29] 2026-01-10 03:48:25,712 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:49:29] 2026-01-10 03:48:25,712 | INFO     | ***************************************
[2026-01-10 12:49:29] 2026-01-10 03:48:25,712 | INFO     | 
[2026-01-10 12:49:29] 2026-01-10 03:48:25,713 | INFO     | architecture information:
[2026-01-10 12:49:29] 2026-01-10 03:48:25,713 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:49:29] 2026-01-10 03:48:25,719 | INFO     | cat /etc/os-release:
[2026-01-10 12:49:29] NAME="CentOS Linux"
[2026-01-10 12:49:29] VERSION="7 (Core)"
[2026-01-10 12:49:29] ID="centos"
[2026-01-10 12:49:29] ID_LIKE="rhel fedora"
[2026-01-10 12:49:29] VERSION_ID="7"
[2026-01-10 12:49:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:49:29] ANSI_COLOR="0;31"
[2026-01-10 12:49:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:49:29] HOME_URL="https://www.centos.org/"
[2026-01-10 12:49:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:49:29] 
[2026-01-10 12:49:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:49:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:49:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:49:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:49:29] 
[2026-01-10 12:49:29] 2026-01-10 03:48:25,719 | INFO     | ***************************************
[2026-01-10 12:49:29] 2026-01-10 03:48:26,221 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-10 12:49:29] 2026-01-10 03:48:26,228 | INFO     | sufficient remaining disk space (279697162240 B)
[2026-01-10 12:49:29] 2026-01-10 03:48:26,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:49:29] 2026-01-10 03:48:26,228 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:49:29] 2026-01-10 03:48:26,228 | INFO     | update_server=False
[2026-01-10 12:49:29] 2026-01-10 03:48:26,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:49:29] 2026-01-10 03:48:26,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:49:29] 2026-01-10 03:48:26,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:49:29] 2026-01-10 03:48:26,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:49:29] 2026-01-10 03:48:26,495 | INFO     | all payload control threads have been joined
[2026-01-10 12:49:29] 2026-01-10 03:48:26,683 | INFO     | all data control threads have been joined
[2026-01-10 12:49:29] 2026-01-10 03:48:26,766 | INFO     | all job control threads have been joined
[2026-01-10 12:49:29] 2026-01-10 03:48:27,065 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:49:29] 2026-01-10 03:48:27,065 | INFO     | aborting loop
[2026-01-10 12:49:29] 2026-01-10 03:48:27,233 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:27,233 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:27,319 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:27,491 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:27,500 | INFO     | [payload] control thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:27,688 | INFO     | [data] control thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:27,771 | INFO     | [job] control thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:27,782 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:27,942 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:28,070 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:28,234 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:28,423 | INFO     | [job] validate thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:28,476 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:28,690 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:30,449 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:36,627 | INFO     | job.realtimelogging is not enabled
[2026-01-10 12:49:29] 2026-01-10 03:48:37,629 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:49:29] 2026-01-10 03:48:56,519 | INFO     | PID=2967150 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:49:29] 2026-01-10 03:48:56,519 | INFO     | .. there are 2 such processes running
[2026-01-10 12:49:29] 2026-01-10 03:48:56,520 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:49:29] 2026-01-10 03:48:56,520 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:49:29] 2026-01-10 03:48:56,520 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:49:29] 2026-01-10 03:49:23,412 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:49:29] 2026-01-10 03:49:24,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140185467037504)>', '<ExcThread(monitor, started 140185090115328)>']
[2026-01-10 12:49:29] 2026-01-10 03:49:24,656 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:49:29] 2026-01-10 03:49:24,656 | INFO     | [monitor] control thread has ended
[2026-01-10 12:49:29] 2026-01-10 03:49:29,410 | INFO     | all workflow threads have been joined
[2026-01-10 12:49:29] 2026-01-10 03:49:29,410 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:49:29] 2026-01-10 03:49:29,410 | INFO     | traces error code: 0
[2026-01-10 12:49:29] 2026-01-10 03:49:29,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:49:29] 2026-01-10 03:49:29,478 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:49:29] 2026-01-10 03:49:29,481 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:49:29] 2026-01-10 03:49:29,482 [wrapper] pilotpid: 2967150
[2026-01-10 12:49:29] 2026-01-10 03:49:29,483 [wrapper] Pilot exit status: 0
[2026-01-10 12:49:29] 2026-01-10 03:49:29,487 [wrapper] pandaids: 6963168840
[2026-01-10 12:49:29] 2026-01-10 03:49:29,499 [wrapper] cleanup supervisor_pilot 3017317 2967151
[2026-01-10 12:49:29] 2026-01-10 03:49:29,500 [wrapper] Test setup, not cleaning
[2026-01-10 12:49:29] 2026-01-10 03:49:29,505 [wrapper] apfmon messages muted
[2026-01-10 12:49:29] 2026-01-10 03:49:29,506 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:49:29] 2026-01-10 03:49:29,507 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:49:29]  *** Error codes and diagnostics ***
[2026-01-10 12:49:29]     "exeErrorCode": 0,
[2026-01-10 12:49:29]     "exeErrorDiag": "",
[2026-01-10 12:49:29]     "pilotErrorCode": 0,
[2026-01-10 12:49:29]     "pilotErrorDiag": "",
[2026-01-10 12:49:29]  *** Listing of results directory ***
[2026-01-10 12:49:29] total 438432
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc    579449 Jan  9 09:57 pilot3.tar.gz
[2026-01-10 12:49:29] -rwx------. 1 boinc boinc     36322 Jan  9 09:57 runpilot2-wrapper.sh
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc      5112 Jan  9 10:01 queuedata.json
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc       100 Jan 10 11:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:49:29] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 11:07 run_atlas
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc       105 Jan 10 11:07 job.xml
[2026-01-10 12:49:29] -rw-r--r--. 2 boinc boinc     15847 Jan 10 11:07 start_atlas.sh
[2026-01-10 12:49:29] drwxrwx--x. 2 boinc boinc        68 Jan 10 11:07 shared
[2026-01-10 12:49:29] -rw-r--r--. 2 boinc boinc    592397 Jan 10 11:07 input.tar.gz
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc      9525 Jan 10 11:07 init_data.xml
[2026-01-10 12:49:29] -rw-r--r--. 2 boinc boinc 225412068 Jan 10 11:07 EVNT.47898824._001393.pool.root.1
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc         0 Jan 10 11:07 boinc_lockfile
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc      2519 Jan 10 11:07 pandaJob.out
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc    989382 Jan 10 11:07 agis_schedconf.cvmfs.json
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc   1516240 Jan 10 11:07 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:49:29] drwx------. 5 boinc boinc      4096 Jan 10 11:07 pilot3
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc       529 Jan 10 12:46 boinc_task_state.xml
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc 217232927 Jan 10 12:46 HITS.47898826._036367.pool.root.1
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc      1016 Jan 10 12:47 memory_monitor_summary.json
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc    320996 Jan 10 12:47 log.47898826._036367.job.log.tgz.1
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc      7756 Jan 10 12:48 heartbeat.json
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc        95 Jan 10 12:48 pilot_heartbeat.json
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc        27 Jan 10 12:49 wrapper_checkpoint.txt
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc      8192 Jan 10 12:49 boinc_mmap_file
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc      4896 Jan 10 12:49 pilotlog.txt
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc    882825 Jan 10 12:49 log.47898826._036367.job.log.1
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc       357 Jan 10 12:49 output.list
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc       620 Jan 10 12:49 runtime_log
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc   1218560 Jan 10 12:49 result.tar.gz
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc       642 Jan 10 12:49 Y6QODmC0Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4egKDmsiuZLm.diag
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc      8775 Jan 10 12:49 runtime_log.err
[2026-01-10 12:49:29] -rw-r--r--. 1 boinc boinc     22034 Jan 10 12:49 stderr.txt
[2026-01-10 12:49:29] HITS file was successfully produced:
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc 217232927 Jan 10 12:46 shared/HITS.pool.root.1
[2026-01-10 12:49:29]  *** Contents of shared directory: ***
[2026-01-10 12:49:29] total 434064
[2026-01-10 12:49:29] -rw-r--r--. 2 boinc boinc     15847 Jan 10 11:07 start_atlas.sh
[2026-01-10 12:49:29] -rw-r--r--. 2 boinc boinc    592397 Jan 10 11:07 input.tar.gz
[2026-01-10 12:49:29] -rw-r--r--. 2 boinc boinc 225412068 Jan 10 11:07 ATLAS.root_0
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc 217232927 Jan 10 12:46 HITS.pool.root.1
[2026-01-10 12:49:29] -rw-------. 1 boinc boinc   1218560 Jan 10 12:49 result.tar.gz
12:49:31 (2963355): run_atlas exited; CPU time 32892.785774
12:49:31 (2963355): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN