Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:26:50 (2983327): wrapper (7.7.26015): starting
11:26:50 (2983327): wrapper: running run_atlas (--nthreads 6)
[2026-01-10 11:26:50] Arguments: --nthreads 6
[2026-01-10 11:26:50] Threads: 6
[2026-01-10 11:26:50] Checking for CVMFS
[2026-01-10 11:26:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:26:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:26:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:26:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:26:51] 2.13.3.0 2126625 1269 73832 154964 2 57 47033525 52428801 1858 130560 0 2758306 99.996 45446 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 11:26:51] CVMFS is ok
[2026-01-10 11:26:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:26:51] Checking for apptainer binary...
[2026-01-10 11:26:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:26:51] Running /usr/bin/apptainer --version
[2026-01-10 11:26:51] apptainer version 1.4.4-1.el9
[2026-01-10 11:26:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:26:51] testio008
[2026-01-10 11:26:51] apptainer works
[2026-01-10 11:26:51] Set ATHENA_PROC_NUMBER=6
[2026-01-10 11:26:51] Set ATHENA_CORE_NUMBER=6
[2026-01-10 11:26:51] Starting ATLAS job with PandaID=6963156513
[2026-01-10 11:26:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:06:25]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:06:25] 2026-01-10 04:05:44,642 | INFO     | log transfer has been attempted: DONE
[2026-01-10 13:06:25] 2026-01-10 04:05:44,642 | INFO     | job 6963156513 has finished - writing final server update
[2026-01-10 13:06:25] 2026-01-10 04:05:44,642 | INFO     | total number of processed events: 400 (read)
[2026-01-10 13:06:25] 2026-01-10 04:05:44,642 | INFO     | executing command: lscpu
[2026-01-10 13:06:25] 2026-01-10 04:05:44,652 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 13:06:25] 2026-01-10 04:05:46,311 | WARNING  | process 2993829 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 13:06:25] 2026-01-10 04:05:46,311 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6963156513/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:06:25] 2026-01-10 04:05:46,336 | INFO     | number of running child processes to parent process 2993829: 1
[2026-01-10 13:06:25] 2026-01-10 04:05:46,336 | INFO     | maximum number of monitored processes: 6
[2026-01-10 13:06:25] 2026-01-10 04:05:46,551 | INFO     | time since job start (5927s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:05:48,556 | INFO     | time since job start (5929s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:05:48,839 | INFO     | monitor loop #432: job 0:6963156513 is in state 'finished'
[2026-01-10 13:06:25] 2026-01-10 04:05:48,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:06:25] 2026-01-10 04:05:49,594 | INFO     | PID=2987111 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 13:06:25] 2026-01-10 04:05:50,594 | INFO     | time since job start (5931s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:05:51,342 | INFO     | monitor loop #433: job 0:6963156513 is in state 'finished'
[2026-01-10 13:06:25] 2026-01-10 04:05:51,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:06:25] 2026-01-10 04:05:52,599 | INFO     | time since job start (5933s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:05:53,844 | INFO     | monitor loop #434: job 0:6963156513 is in state 'finished'
[2026-01-10 13:06:25] 2026-01-10 04:05:53,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:06:25] 2026-01-10 04:05:54,604 | INFO     | time since job start (5935s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:05:56,346 | INFO     | monitor loop #435: job 0:6963156513 is in state 'finished'
[2026-01-10 13:06:25] 2026-01-10 04:05:56,346 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:06:25] 2026-01-10 04:05:56,609 | INFO     | time since job start (5937s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:05:58,614 | INFO     | time since job start (5939s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:05:58,848 | INFO     | monitor loop #436: job 0:6963156513 is in state 'finished'
[2026-01-10 13:06:25] 2026-01-10 04:05:58,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:06:25] 2026-01-10 04:06:00,619 | INFO     | time since job start (5941s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:06:00,620 | INFO     | 5946s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-10 13:06:25] 2026-01-10 04:06:01,351 | INFO     | monitor loop #437: job 0:6963156513 is in state 'finished'
[2026-01-10 13:06:25] 2026-01-10 04:06:01,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:06:25] 2026-01-10 04:06:02,624 | INFO     | time since job start (5943s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:06:03,854 | INFO     | monitor loop #438: job 0:6963156513 is in state 'finished'
[2026-01-10 13:06:25] 2026-01-10 04:06:03,854 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:06:25] 2026-01-10 04:06:04,629 | INFO     | time since job start (5945s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:06:06,356 | INFO     | monitor loop #439: job 0:6963156513 is in state 'finished'
[2026-01-10 13:06:25] 2026-01-10 04:06:06,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:06:25] 2026-01-10 04:06:06,616 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 13:06:25] 2026-01-10 04:06:06,617 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4279.998000000001
[2026-01-10 13:06:25] 2026-01-10 04:06:06,618 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6963156513/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:06:25] 2026-01-10 04:06:06,618 | INFO     | extracted standard info from prmon json
[2026-01-10 13:06:25] 2026-01-10 04:06:06,618 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:06:25] 2026-01-10 04:06:06,618 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:06:25] 2026-01-10 04:06:06,618 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 13:06:25] 2026-01-10 04:06:06,618 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | sum of square deviations: 226022842.5
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | sum of deviations: -20611799868.5
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | mean x: 1768015059.5
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | mean y: 2599972.855555556
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | intersect: 161233970076.11456
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | chi2: 0.17719507341812218
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | current memory leak: -91.19 B/s (using 90 data points, chi2=0.18)
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | could have reported an average CPU frequency of 3299 MHz (7 samples)
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | ..............................
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | . Timing measurements:
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | . get job = 0 s
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | . initial setup = 5 s
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | . payload setup = 3 s
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | . stage-in = 0 s
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | . payload execution = 5901 s
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | . stage-out = 0 s
[2026-01-10 13:06:25] 2026-01-10 04:06:06,619 | INFO     | . log creation = 0 s
[2026-01-10 13:06:25] 2026-01-10 04:06:06,620 | INFO     | ..............................
[2026-01-10 13:06:25] 2026-01-10 04:06:06,640 | INFO     | time since job start (5947s) is within the limit (349056.0s)
[2026-01-10 13:06:25] 2026-01-10 04:06:06,645 | INFO     | 
[2026-01-10 13:06:25] 2026-01-10 04:06:06,645 | INFO     | job summary report
[2026-01-10 13:06:25] 2026-01-10 04:06:06,645 | INFO     | --------------------------------------------------
[2026-01-10 13:06:25] 2026-01-10 04:06:06,645 | INFO     | PanDA job id: 6963156513
[2026-01-10 13:06:25] 2026-01-10 04:06:06,645 | INFO     | task id: 47898826
[2026-01-10 13:06:25] 2026-01-10 04:06:06,645 | INFO     | errors: (none)
[2026-01-10 13:06:25] 2026-01-10 04:06:06,645 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:06:25] 2026-01-10 04:06:06,645 | INFO     | pilot state: finished 
[2026-01-10 13:06:25] 2026-01-10 04:06:06,645 | INFO     | transexitcode: 0
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | exeerrorcode: 0
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | exeerrordiag: 
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | exitcode: 0
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | exitmsg: OK
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | cpuconsumptiontime: 32345 s
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | nevents: 400
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | neventsw: 0
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | pid: 2993829
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | pgrp: 2993829
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | corecount: 6
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | event service: False
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | sizes: {0: 2283970, 2: 2284232, 11: 2284260, 5908: 2311011, 5910: 2320065, 5935: 2320203}
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | --------------------------------------------------
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | 
[2026-01-10 13:06:25] 2026-01-10 04:06:06,646 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | job 6963156513 has completed (purged errors)
[2026-01-10 13:06:25] 2026-01-10 04:06:06,654 | INFO     | overall cleanup function is called
[2026-01-10 13:06:25] 2026-01-10 04:06:07,660 | INFO     | --- collectZombieJob: --- 10, [2993829]
[2026-01-10 13:06:25] 2026-01-10 04:06:07,660 | INFO     | zombie collector waiting for pid 2993829
[2026-01-10 13:06:25] 2026-01-10 04:06:07,660 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:06:25] 2026-01-10 04:06:07,660 | INFO     | collected zombie processes
[2026-01-10 13:06:25] 2026-01-10 04:06:07,660 | INFO     | will attempt to kill all subprocesses of pid=2993829
[2026-01-10 13:06:25] 2026-01-10 04:06:07,686 | INFO     | process IDs to be killed: [2993829] (in reverse order)
[2026-01-10 13:06:25] 2026-01-10 04:06:07,700 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:06:25] 2026-01-10 04:06:07,700 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:06:25] 2026-01-10 04:06:07,701 | INFO     | did not find any defunct processes belonging to 2993829
[2026-01-10 13:06:25] 2026-01-10 04:06:07,702 | INFO     | did not find any defunct processes belonging to 2993829
[2026-01-10 13:06:25] 2026-01-10 04:06:07,702 | INFO     | ready for new job
[2026-01-10 13:06:25] 2026-01-10 04:06:07,702 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:06:25] 2026-01-10 04:06:07,703 | INFO     | ***************************************
[2026-01-10 13:06:25] 2026-01-10 04:06:07,703 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:06:25] 2026-01-10 04:06:07,703 | INFO     | ***************************************
[2026-01-10 13:06:25] 2026-01-10 04:06:07,703 | INFO     | 
[2026-01-10 13:06:25] 2026-01-10 04:06:07,703 | INFO     | architecture information:
[2026-01-10 13:06:25] 2026-01-10 04:06:07,704 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:06:25] 2026-01-10 04:06:07,709 | INFO     | cat /etc/os-release:
[2026-01-10 13:06:25] NAME="CentOS Linux"
[2026-01-10 13:06:25] VERSION="7 (Core)"
[2026-01-10 13:06:25] ID="centos"
[2026-01-10 13:06:25] ID_LIKE="rhel fedora"
[2026-01-10 13:06:25] VERSION_ID="7"
[2026-01-10 13:06:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:06:25] ANSI_COLOR="0;31"
[2026-01-10 13:06:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:06:25] HOME_URL="https://www.centos.org/"
[2026-01-10 13:06:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:06:25] 
[2026-01-10 13:06:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:06:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:06:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:06:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:06:25] 
[2026-01-10 13:06:25] 2026-01-10 04:06:07,709 | INFO     | ***************************************
[2026-01-10 13:06:25] 2026-01-10 04:06:08,211 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-01-10 13:06:25] 2026-01-10 04:06:08,217 | INFO     | sufficient remaining disk space (280169021440 B)
[2026-01-10 13:06:25] 2026-01-10 04:06:08,217 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:06:25] 2026-01-10 04:06:08,217 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:06:25] 2026-01-10 04:06:08,217 | INFO     | update_server=False
[2026-01-10 13:06:25] 2026-01-10 04:06:08,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:06:25] 2026-01-10 04:06:08,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:06:25] 2026-01-10 04:06:08,218 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:06:25] 2026-01-10 04:06:08,218 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 13:06:25] 2026-01-10 04:06:08,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:06:25] 2026-01-10 04:06:08,218 | INFO     | aborting loop
[2026-01-10 13:06:25] 2026-01-10 04:06:08,218 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:06:25] 2026-01-10 04:06:08,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:06:25] 2026-01-10 04:06:08,218 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:06:25] 2026-01-10 04:06:08,960 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:06:25] 2026-01-10 04:06:08,990 | INFO     | all job control threads have been joined
[2026-01-10 13:06:25] 2026-01-10 04:06:09,210 | INFO     | all data control threads have been joined
[2026-01-10 13:06:25] 2026-01-10 04:06:09,222 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:09,223 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:09,223 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:09,708 | INFO     | all payload control threads have been joined
[2026-01-10 13:06:25] 2026-01-10 04:06:09,916 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:09,995 | INFO     | [job] control thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:10,016 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:10,141 | INFO     | [job] validate thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:10,215 | INFO     | [data] control thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:10,223 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:10,346 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:10,370 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:10,419 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:10,678 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:06:25] 2026-01-10 04:06:10,710 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:10,713 | INFO     | [payload] control thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:14,683 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:18,782 | INFO     | job.realtimelogging is not enabled
[2026-01-10 13:06:25] 2026-01-10 04:06:19,787 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:06:25] 2026-01-10 04:06:20,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140559293814592)>', '<ExcThread(monitor, started 140558928418560)>']
[2026-01-10 13:06:25] 2026-01-10 04:06:21,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:06:25] 2026-01-10 04:06:21,283 | INFO     | [monitor] control thread has ended
[2026-01-10 13:06:25] 2026-01-10 04:06:25,430 | INFO     | all workflow threads have been joined
[2026-01-10 13:06:25] 2026-01-10 04:06:25,430 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:06:25] 2026-01-10 04:06:25,431 | INFO     | traces error code: 0
[2026-01-10 13:06:25] 2026-01-10 04:06:25,431 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:06:25] 2026-01-10 04:06:25,497 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:06:25] 2026-01-10 04:06:25,499 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:06:25] 2026-01-10 04:06:25,500 [wrapper] pilotpid: 2987111
[2026-01-10 13:06:25] 2026-01-10 04:06:25,502 [wrapper] Pilot exit status: 0
[2026-01-10 13:06:25] 2026-01-10 04:06:25,515 [wrapper] pandaids: 6963156513
[2026-01-10 13:06:25] 2026-01-10 04:06:25,536 [wrapper] cleanup supervisor_pilot 3022486 2987112
[2026-01-10 13:06:25] 2026-01-10 04:06:25,540 [wrapper] Test setup, not cleaning
[2026-01-10 13:06:25] 2026-01-10 04:06:25,542 [wrapper] apfmon messages muted
[2026-01-10 13:06:25] 2026-01-10 04:06:25,543 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:06:25] 2026-01-10 04:06:25,545 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:06:25]  *** Error codes and diagnostics ***
[2026-01-10 13:06:25]     "exeErrorCode": 0,
[2026-01-10 13:06:25]     "exeErrorDiag": "",
[2026-01-10 13:06:25]     "pilotErrorCode": 0,
[2026-01-10 13:06:25]     "pilotErrorDiag": "",
[2026-01-10 13:06:25]  *** Listing of results directory ***
[2026-01-10 13:06:25] total 441636
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc    579449 Jan  9 04:06 pilot3.tar.gz
[2026-01-10 13:06:25] -rwx------. 1 boinc boinc     36322 Jan  9 04:10 runpilot2-wrapper.sh
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc      5112 Jan  9 04:11 queuedata.json
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc       100 Jan 10 11:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:06:25] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 11:26 run_atlas
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc       105 Jan 10 11:26 job.xml
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc      9525 Jan 10 11:26 init_data.xml
[2026-01-10 13:06:25] -rw-r--r--. 2 boinc boinc 223745588 Jan 10 11:26 EVNT.47898824._001203.pool.root.1
[2026-01-10 13:06:25] -rw-r--r--. 2 boinc boinc     15847 Jan 10 11:26 start_atlas.sh
[2026-01-10 13:06:25] drwxrwx--x. 2 boinc boinc        68 Jan 10 11:26 shared
[2026-01-10 13:06:25] -rw-r--r--. 2 boinc boinc    592386 Jan 10 11:26 input.tar.gz
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc         0 Jan 10 11:26 boinc_lockfile
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc      2519 Jan 10 11:26 pandaJob.out
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc    989382 Jan 10 11:26 agis_schedconf.cvmfs.json
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc   1516240 Jan 10 11:26 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:06:25] drwx------. 5 boinc boinc      4096 Jan 10 11:26 pilot3
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc 222247404 Jan 10 13:05 HITS.47898826._031683.pool.root.1
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc       530 Jan 10 13:05 boinc_task_state.xml
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc        95 Jan 10 13:05 pilot_heartbeat.json
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc      1016 Jan 10 13:05 memory_monitor_summary.json
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc    308377 Jan 10 13:05 log.47898826._031683.job.log.tgz.1
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc      7763 Jan 10 13:06 heartbeat.json
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc        27 Jan 10 13:06 wrapper_checkpoint.txt
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc      8192 Jan 10 13:06 boinc_mmap_file
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc      4625 Jan 10 13:06 pilotlog.txt
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc    859477 Jan 10 13:06 log.47898826._031683.job.log.1
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc       357 Jan 10 13:06 output.list
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc       620 Jan 10 13:06 runtime_log
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc   1187840 Jan 10 13:06 result.tar.gz
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc       641 Jan 10 13:06 xUiKDmwZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwNlKDmCUiPom.diag
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc      8775 Jan 10 13:06 runtime_log.err
[2026-01-10 13:06:25] -rw-r--r--. 1 boinc boinc     21995 Jan 10 13:06 stderr.txt
[2026-01-10 13:06:25] HITS file was successfully produced:
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc 222247404 Jan 10 13:05 shared/HITS.pool.root.1
[2026-01-10 13:06:25]  *** Contents of shared directory: ***
[2026-01-10 13:06:25] total 437304
[2026-01-10 13:06:25] -rw-r--r--. 2 boinc boinc 223745588 Jan 10 11:26 ATLAS.root_0
[2026-01-10 13:06:25] -rw-r--r--. 2 boinc boinc     15847 Jan 10 11:26 start_atlas.sh
[2026-01-10 13:06:25] -rw-r--r--. 2 boinc boinc    592386 Jan 10 11:26 input.tar.gz
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc 222247404 Jan 10 13:05 HITS.pool.root.1
[2026-01-10 13:06:25] -rw-------. 1 boinc boinc   1187840 Jan 10 13:06 result.tar.gz
13:06:27 (2983327): run_atlas exited; CPU time 32381.415507
13:06:27 (2983327): called boinc_finish(0)

</stderr_txt>
]]>

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