Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-10 06:06:42 (42904): vboxwrapper version 26210
2026-01-10 06:06:42 (42904): BOINC client version: 7.16.20
2026-01-10 06:06:43 (42904): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2026-01-10 06:06:43 (42904): Successfully copied 'init_data.xml' to the shared directory.
2026-01-10 06:06:43 (42904): Create VM. (boinc_f460b8a83dd2710f, slot#3)
2026-01-10 06:06:44 (42904): Setting Memory Size for VM. (4800MB)
2026-01-10 06:06:44 (42904): Setting CPU Count for VM. (8)
2026-01-10 06:06:44 (42904): Setting Chipset Options for VM.
2026-01-10 06:06:45 (42904): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-10 06:06:45 (42904): Setting Boot Options for VM.
2026-01-10 06:06:46 (42904): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-10 06:06:46 (42904): Enabling VM Network Access.
2026-01-10 06:06:46 (42904): Disabling USB Support for VM.
2026-01-10 06:06:46 (42904): Disabling COM Port Support for VM.
2026-01-10 06:06:47 (42904): Disabling LPT Port Support for VM.
2026-01-10 06:06:47 (42904): Disabling Audio Support for VM.
2026-01-10 06:06:47 (42904): Disabling Clipboard Support for VM.
2026-01-10 06:06:47 (42904): Disabling Drag and Drop Support for VM.
2026-01-10 06:06:48 (42904): Adding storage controller(s) to VM.
2026-01-10 06:06:48 (42904): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-10 06:06:49 (42904): Adding VirtualBox Guest Additions to VM.
2026-01-10 06:06:49 (42904): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-10 06:06:49 (42904): forwarding host port 57989 to guest port 80
2026-01-10 06:06:50 (42904): Enabling remote desktop for VM.
2026-01-10 06:06:50 (42904): Required extension pack not installed, remote desktop not enabled.
2026-01-10 06:06:50 (42904): Enabling shared directory for VM.
2026-01-10 06:06:51 (42904): Starting VM using VBoxManage interface. (boinc_f460b8a83dd2710f, slot#3)
2026-01-10 06:06:54 (42904): Successfully started VM. (PID = '40884')
2026-01-10 06:06:54 (42904): Reporting VM Process ID to BOINC.
2026-01-10 06:06:54 (42904): Guest Log: BIOS: VirtualBox 6.0.14
2026-01-10 06:06:54 (42904): Guest Log: CPUID EDX: 0x178bfbff
2026-01-10 06:06:54 (42904): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-10 06:06:54 (42904): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-10 06:06:54 (42904): Detected: Web Application Enabled (http://localhost:57989)
2026-01-10 06:06:54 (42904): Preference change detected
2026-01-10 06:06:54 (42904): Setting CPU throttle for VM. (100%)
2026-01-10 06:06:55 (42904): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-10 06:06:56 (42904): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-10 06:06:56 (42904): Guest Log: BIOS: Booting from Hard Disk...
2026-01-10 06:07:00 (42904): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-10 06:07:00 (42904): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-10 06:07:00 (42904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-10 06:07:08 (42904): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-10 06:07:08 (42904): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2026-01-10 06:07:17 (42904): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-10 06:07:17 (42904): Guest Log: 00:00:00.000236 main     Log opened 2026-01-10T06:07:15.702631000Z
2026-01-10 06:07:17 (42904): Guest Log: 00:00:00.000345 main     OS Product: Linux
2026-01-10 06:07:17 (42904): Guest Log: 00:00:00.000391 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-10 06:07:17 (42904): Guest Log: 00:00:00.000431 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-10 06:07:17 (42904): Guest Log: 00:00:00.000482 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-10 06:07:17 (42904): Guest Log: 00:00:00.000484 main     Process ID: 1372
2026-01-10 06:07:17 (42904): Guest Log: 00:00:00.000485 main     Package type: LINUX_64BITS_GENERIC
2026-01-10 06:07:17 (42904): Guest Log: 00:00:00.001878 main     5.2.32 r132073 started. Verbose level = 0
2026-01-10 06:07:18 (42904): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-10 06:07:18 (42904): Guest Log: [INFO] Mounting shared directory
2026-01-10 06:07:18 (42904): Guest Log: [INFO] Checking for init_data.xml
2026-01-10 06:07:21 (42904): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-10 06:07:21 (42904): Guest Log: [INFO] Detected branch: prod
2026-01-10 06:07:21 (42904): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-10 06:07:21 (42904): Guest Log: Copying input files
2026-01-10 06:07:25 (42904): Guest Log: Copied input files into RunAtlas.
2026-01-10 06:07:25 (42904): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-10 06:07:25 (42904): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-10 06:07:25 (42904): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-10 06:07:25 (42904): Guest Log: Further information can be found at the LHC@home message board.
2026-01-10 06:07:27 (42904): Guest Log: 00:00:10.007415 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 832 121 000ns (GuestNow=1 768 021 647 873 783 000 ns GuestLast=1 768 025 235 705 904 000 ns fSetTimeLastLoop=true )
2026-01-10 06:08:24 (42904): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-10 06:08:24 (42904): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-10 06:08:24 (42904): Guest Log: 2.6.3.0 1649 1 32188 154968 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-01-10 06:08:28 (42904): Guest Log: copied the webapp to /var/www
2026-01-10 06:08:28 (42904): Guest Log: ATHENA_PROC_NUMBER=8
2026-01-10 06:08:28 (42904): Guest Log: ATHENA_CORE_NUMBER=8
2026-01-10 06:08:28 (42904): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-10 06:08:28 (42904): Guest Log:  *** Starting ATLAS job. (PandaID=6963077076 taskID=47947082) ***
2026-01-10 07:47:07 (42904): Status Report: Elapsed Time: '6000.000000'
2026-01-10 07:47:07 (42904): Status Report: CPU Time: '39827.640625'
2026-01-10 09:27:21 (42904): Status Report: Elapsed Time: '12000.000000'
2026-01-10 09:27:21 (42904): Status Report: CPU Time: '84207.890625'
2026-01-10 11:07:32 (42904): Status Report: Elapsed Time: '18000.906544'
2026-01-10 11:07:32 (42904): Status Report: CPU Time: '125513.515625'
2026-01-10 11:11:09 (42904): Guest Log:  *** Job finished ***
2026-01-10 11:11:09 (42904): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:10:30,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:10:30,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:00,850 | INFO     | [monitor] cgroup control has ended
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:02,946 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140675147429696)>', '<ExcThread(monitor, started 140674716387072)>']
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:03,900 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:03,900 | INFO     | [monitor] control thread has ended
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:07,954 | INFO     | all workflow threads have been joined
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:07,954 | INFO     | end of generic workflow (traces error code: 0)
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:07,955 | INFO     | traces error code: 0
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:07,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:08,095 [wrapper] ==== pilot stdout END ====
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:08,102 [wrapper] ==== wrapper stdout RESUME ====
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:08,110 [wrapper] pilotpid: 6101
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:08,118 [wrapper] Pilot exit status: 0
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:08,144 [wrapper] pandaids: 6963077076
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:08,202 [wrapper] cleanup supervisor_pilot 21323 6102
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:08,217 [wrapper] Test setup, not cleaning
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:08,225 [wrapper] apfmon messages muted
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:08,234 [wrapper] ==== wrapper stdout END ====
2026-01-10 11:11:09 (42904): Guest Log: 2026-01-10 10:11:08,241 [wrapper] ==== wrapper stderr END ====
2026-01-10 11:11:09 (42904): Guest Log:  *** Error codes and diagnostics ***
2026-01-10 11:11:09 (42904): Guest Log:     "exeErrorCode": 0,
2026-01-10 11:11:09 (42904): Guest Log:     "exeErrorDiag": "",
2026-01-10 11:11:09 (42904): Guest Log:     "pilotErrorCode": 0,
2026-01-10 11:11:09 (42904): Guest Log:     "pilotErrorDiag": "",
2026-01-10 11:11:09 (42904): Guest Log:  *** Listing of results directory ***
2026-01-10 11:11:09 (42904): Guest Log: total 158028
2026-01-10 11:11:09 (42904): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Jan  8 11:09 pilot3.tar.gz
2026-01-10 11:11:09 (42904): Guest Log: -rwx------. 1 atlas atlas     36322 Jan  8 11:57 runpilot2-wrapper.sh
2026-01-10 11:11:09 (42904): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jan  8 11:57 queuedata.json
2026-01-10 11:11:09 (42904): Guest Log: -rwxr-xr-x. 1 atlas atlas      8774 Jan 10 05:07 init_data.xml
2026-01-10 11:11:09 (42904): Guest Log: -rwxr-xr-x. 1 atlas atlas    592610 Jan 10 05:07 input.tar.gz
2026-01-10 11:11:09 (42904): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Jan 10 05:07 start_atlas.sh
2026-01-10 11:11:09 (42904): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 10 05:07 EVNT.47947080._000150.pool.root.1 -> /data/./ATLAS.root_0
2026-01-10 11:11:09 (42904): Guest Log: -rw-r--r--. 1 atlas atlas      2877 Jan 10 05:08 pandaJob.out
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas    989374 Jan 10 05:09 agis_schedconf.cvmfs.json
2026-01-10 11:11:09 (42904): Guest Log: drwx------. 5 atlas atlas      4096 Jan 10 05:09 pilot3
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas 150368973 Jan 10 10:09 HITS.47947082._005335.pool.root.1
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas      1041 Jan 10 10:09 memory_monitor_summary.json
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas        95 Jan 10 10:09 pilot_heartbeat.json
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas   1516240 Jan 10 10:09 agis_ddmendpoints.agis.ALL.json
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas   1438956 Jan 10 10:09 log.47947082._005335.job.log.tgz.1
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas      8652 Jan 10 10:09 heartbeat.json
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas      4805 Jan 10 10:11 pilotlog.txt
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas   2360645 Jan 10 10:11 log.47947082._005335.job.log.1
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas       353 Jan 10 10:11 output.list
2026-01-10 11:11:09 (42904): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 10 10:11 runtime_log
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas   3819520 Jan 10 10:11 result.tar.gz
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas       662 Jan 10 10:11 xHmLDmZo3x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKIfKDmqj3tnm.diag
2026-01-10 11:11:09 (42904): Guest Log: -rw-r--r--. 1 atlas atlas      8756 Jan 10 10:11 runtime_log.err
2026-01-10 11:11:09 (42904): Guest Log: Looking for outputfile HITS.47947082._005335.pool.root.1
2026-01-10 11:11:09 (42904): Guest Log: HITS file was successfully produced
2026-01-10 11:11:09 (42904): Guest Log: -rw-------. 1 atlas atlas 150368973 Jan 10 10:09 /home/atlas/RunAtlas/HITS.47947082._005335.pool.root.1
2026-01-10 11:11:11 (42904): Guest Log: Successfully finished the ATLAS job!
2026-01-10 11:11:11 (42904): Guest Log: Copying the results back to the shared directory!
2026-01-10 11:11:11 (42904): Guest Log:  *** Contents of shared directory: ***
2026-01-10 11:11:11 (42904): Guest Log: total 559108
2026-01-10 11:11:11 (42904): Guest Log: -rwxrwxrwx. 1 root root 417709010 Jan 10 05:06 ATLAS.root_0
2026-01-10 11:11:11 (42904): Guest Log: -rwxrwxrwx. 1 root root 150368973 Jan 10 10:11 HITS.pool.root.1
2026-01-10 11:11:11 (42904): Guest Log: -rwxrwxrwx. 1 root root      8774 Jan 10 05:06 init_data.xml
2026-01-10 11:11:11 (42904): Guest Log: -rwxrwxrwx. 1 root root    592610 Jan  9 22:20 input.tar.gz
2026-01-10 11:11:11 (42904): Guest Log: -rwxrwxrwx. 1 root root   3819520 Jan 10 10:11 result.tar.gz
2026-01-10 11:11:11 (42904): Guest Log: -rwxrwxrwx. 1 root root     15847 Jan  9 22:20 start_atlas.sh
2026-01-10 11:11:11 (42904): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-10 11:11:11 (42904): VM Completion File Detected.
2026-01-10 11:11:11 (42904): Powering off VM.
2026-01-10 11:11:12 (42904): Successfully stopped VM.
2026-01-10 11:11:12 (42904): Deregistering VM. (boinc_f460b8a83dd2710f, slot#3)
2026-01-10 11:11:12 (42904): Removing network bandwidth throttle group from VM.
2026-01-10 11:11:13 (42904): Removing VM from VirtualBox.
2026-01-10 11:11:18 (42904): called boinc_finish(0)

</stderr_txt>
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