Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:41:27 (16546): wrapper (7.7.26015): starting
02:41:27 (16546): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 02:41:27] Arguments: --nthreads 8
[2026-01-10 02:41:27] Threads: 8
[2026-01-10 02:41:27] Checking for CVMFS
[2026-01-10 02:41:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:41:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:41:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:41:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:41:28] 2.11.0.0 3881 129441 96432 154963 0 131 3350683 4096000 2285 130560 2 13142405 99.653 8177814 505 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 02:41:28] CVMFS is ok
[2026-01-10 02:41:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:41:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:41:28] Further information can be found at the LHC@home message board.
[2026-01-10 02:41:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:41:28] Checking for apptainer binary...
[2026-01-10 02:41:28] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 02:41:28] apptainer is not installed, using version from CVMFS
[2026-01-10 02:41:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:41:28] WARNING: Environment variable TMPDIR already has value [/tmp/job_11009988/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node040
[2026-01-10 02:41:28] apptainer works
[2026-01-10 02:41:28] Set ATHENA_PROC_NUMBER=8
[2026-01-10 02:41:28] Set ATHENA_CORE_NUMBER=8
[2026-01-10 02:41:28] Starting ATLAS job with PandaID=6963381440
[2026-01-10 02:41:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11009988/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:32:12]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:32:12] 2026-01-10 06:31:38,953 | INFO     | monitor loop #1271: job 0:6963381440 is in state 'finished'
[2026-01-10 07:32:12] 2026-01-10 06:31:38,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,392 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 07:32:12] 2026-01-10 06:31:39,397 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2364.894890625
[2026-01-10 07:32:12] 2026-01-10 06:31:39,400 | INFO     | time since job start (17406s) is within the limit (349056.0s)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,402 | INFO     | using path: /tmp/job_11009988/atlas/pilot/slots/0/PanDA_Pilot-6963381440/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,402 | INFO     | extracted standard info from prmon json
[2026-01-10 07:32:12] 2026-01-10 06:31:39,402 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 07:32:12] 2026-01-10 06:31:39,403 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 07:32:12] 2026-01-10 06:31:39,405 | INFO     | fitting pss+swap vs Time
[2026-01-10 07:32:12] 2026-01-10 06:31:39,405 | INFO     | sum of square deviations: 7178069470.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,406 | INFO     | sum of deviations: 166464260666.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,406 | INFO     | mean x: 1768017973.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,407 | INFO     | mean y: 2889835.4210526315
[2026-01-10 07:32:12] 2026-01-10 06:31:39,407 | INFO     | intersect: -40998636542.90264
[2026-01-10 07:32:12] 2026-01-10 06:31:39,407 | INFO     | chi2: 2.1458198954133385
[2026-01-10 07:32:12] 2026-01-10 06:31:39,407 | INFO     | sum of square deviations: 6806862510.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,408 | INFO     | sum of deviations: 193764803529.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,408 | INFO     | mean x: 1768017820.5
[2026-01-10 07:32:12] 2026-01-10 06:31:39,408 | INFO     | mean y: 2900916.8642857145
[2026-01-10 07:32:12] 2026-01-10 06:31:39,408 | INFO     | intersect: -50325664574.45681
[2026-01-10 07:32:12] 2026-01-10 06:31:39,409 | INFO     | chi2: 1.4541021459114727
[2026-01-10 07:32:12] 2026-01-10 06:31:39,409 | INFO     | current chi2=1.4541021459114727 (change=32.235592138016955 %)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,409 | INFO     | sum of square deviations: 6448679050.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,410 | INFO     | sum of deviations: 187145858229.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,410 | INFO     | mean x: 1768017668.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,410 | INFO     | mean y: 2898100.68
[2026-01-10 07:32:12] 2026-01-10 06:31:39,410 | INFO     | intersect: -51306398156.186005
[2026-01-10 07:32:12] 2026-01-10 06:31:39,410 | INFO     | chi2: 1.4521125445296854
[2026-01-10 07:32:12] 2026-01-10 06:31:39,410 | INFO     | current chi2=1.4521125445296854 (change=0.13682679634174785 %)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,410 | INFO     | right removable region: 274
[2026-01-10 07:32:12] 2026-01-10 06:31:39,410 | INFO     | sum of square deviations: 6806862510.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,412 | INFO     | sum of deviations: 112346411083.99998
[2026-01-10 07:32:12] 2026-01-10 06:31:39,412 | INFO     | mean x: 1768018125.5
[2026-01-10 07:32:12] 2026-01-10 06:31:39,412 | INFO     | mean y: 2911917.435714286
[2026-01-10 07:32:12] 2026-01-10 06:31:39,412 | INFO     | intersect: -29178005258.366924
[2026-01-10 07:32:12] 2026-01-10 06:31:39,412 | INFO     | chi2: 0.7497705913932624
[2026-01-10 07:32:12] 2026-01-10 06:31:39,412 | INFO     | current chi2=0.7497705913932624 (change=65.05901576381656 %)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,412 | INFO     | sum of square deviations: 6448679050.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,413 | INFO     | sum of deviations: 98094863110.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,413 | INFO     | mean x: 1768018278.0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,413 | INFO     | mean y: 2917978.610909091
[2026-01-10 07:32:12] 2026-01-10 06:31:39,413 | INFO     | intersect: -26891506385.14897
[2026-01-10 07:32:12] 2026-01-10 06:31:39,413 | INFO     | chi2: 0.7262333473957749
[2026-01-10 07:32:12] 2026-01-10 06:31:39,413 | INFO     | current chi2=0.7262333473957749 (change=3.13925943050785 %)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,413 | INFO     | left removable region: 20
[2026-01-10 07:32:12] 2026-01-10 06:31:39,414 | INFO     | sum of square deviations: 5081276667.5
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | sum of deviations: 99451689007.50003
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | mean x: 1768018247.5
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | mean y: 2936990.1141732284
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | intersect: -34601043941.40735
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | chi2: 0.01971960939831274
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | current memory leak: 19.57 B/s (using 254 data points, chi2=0.02)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | could have reported an average CPU frequency of 2767 MHz (13 samples)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | ..............................
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | . Timing measurements:
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | . get job = 0 s
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | . initial setup = 1 s
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | . payload setup = 2 s
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | . stage-in = 0 s
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | . payload execution = 17380 s
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | . stage-out = 1 s
[2026-01-10 07:32:12] 2026-01-10 06:31:39,415 | INFO     | . log creation = 0 s
[2026-01-10 07:32:12] 2026-01-10 06:31:39,416 | INFO     | ..............................
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | 
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | job summary report
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | --------------------------------------------------
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | PanDA job id: 6963381440
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | task id: 47962010
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | errors: (none)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | pilot state: finished 
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | transexitcode: 0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | exeerrorcode: 0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | exeerrordiag: 
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | exitcode: 0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | exitmsg: OK
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | cpuconsumptiontime: 132626 s
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | nevents: 900
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | neventsw: 0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | pid: 13187
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | pgrp: 13187
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | corecount: 8
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | event service: False
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | sizes: {0: 2284748, 1: 2284748, 2: 2285038, 11: 2285066, 17386: 2318195, 17387: 2318194, 17388: 2327402, 17390: 2327458, 17394: 2327704}
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | --------------------------------------------------
[2026-01-10 07:32:12] 2026-01-10 06:31:39,838 | INFO     | 
[2026-01-10 07:32:12] 2026-01-10 06:31:39,839 | INFO     | executing command: ls -lF /tmp/job_11009988/atlas/pilot/slots/0
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,847 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,848 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,848 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,848 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,848 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,848 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:32:12] 2026-01-10 06:31:39,848 | INFO     | job 6963381440 has completed (purged errors)
[2026-01-10 07:32:12] 2026-01-10 06:31:39,848 | INFO     | overall cleanup function is called
[2026-01-10 07:32:12] 2026-01-10 06:31:40,855 | INFO     | --- collectZombieJob: --- 10, [13187]
[2026-01-10 07:32:12] 2026-01-10 06:31:40,855 | INFO     | zombie collector waiting for pid 13187
[2026-01-10 07:32:12] 2026-01-10 06:31:40,855 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:32:12] 2026-01-10 06:31:40,855 | INFO     | collected zombie processes
[2026-01-10 07:32:12] 2026-01-10 06:31:40,855 | INFO     | will attempt to kill all subprocesses of pid=13187
[2026-01-10 07:32:12] 2026-01-10 06:31:40,942 | INFO     | process IDs to be killed: [13187] (in reverse order)
[2026-01-10 07:32:12] 2026-01-10 06:31:40,972 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:32:12] 2026-01-10 06:31:40,972 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:32:12] 2026-01-10 06:31:40,975 | INFO     | did not find any defunct processes belonging to 13187
[2026-01-10 07:32:12] 2026-01-10 06:31:40,978 | INFO     | did not find any defunct processes belonging to 13187
[2026-01-10 07:32:12] 2026-01-10 06:31:40,978 | INFO     | ready for new job
[2026-01-10 07:32:12] 2026-01-10 06:31:40,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:32:12] 2026-01-10 06:31:40,979 | INFO     | ***************************************
[2026-01-10 07:32:12] 2026-01-10 06:31:40,979 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:32:12] 2026-01-10 06:31:40,979 | INFO     | ***************************************
[2026-01-10 07:32:12] 2026-01-10 06:31:40,980 | INFO     | 
[2026-01-10 07:32:12] 2026-01-10 06:31:40,994 | INFO     | architecture information:
[2026-01-10 07:32:12] 2026-01-10 06:31:40,994 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:32:12] 2026-01-10 06:31:41,000 | INFO     | cat /etc/os-release:
[2026-01-10 07:32:12] NAME="CentOS Linux"
[2026-01-10 07:32:12] VERSION="7 (Core)"
[2026-01-10 07:32:12] ID="centos"
[2026-01-10 07:32:12] ID_LIKE="rhel fedora"
[2026-01-10 07:32:12] VERSION_ID="7"
[2026-01-10 07:32:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:32:12] ANSI_COLOR="0;31"
[2026-01-10 07:32:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:32:12] HOME_URL="https://www.centos.org/"
[2026-01-10 07:32:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:32:12] 
[2026-01-10 07:32:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:32:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:32:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:32:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:32:12] 
[2026-01-10 07:32:12] 2026-01-10 06:31:41,000 | INFO     | ***************************************
[2026-01-10 07:32:12] 2026-01-10 06:31:41,503 | INFO     | executing command: df -mP /tmp/job_11009988/atlas/pilot/slots/0
[2026-01-10 07:32:12] 2026-01-10 06:31:41,509 | INFO     | sufficient remaining disk space (226407481344 B)
[2026-01-10 07:32:12] 2026-01-10 06:31:41,509 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:32:12] 2026-01-10 06:31:41,509 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:32:12] 2026-01-10 06:31:41,509 | INFO     | update_server=False
[2026-01-10 07:32:12] 2026-01-10 06:31:41,509 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:32:12] 2026-01-10 06:31:41,653 | INFO     | all payload control threads have been joined
[2026-01-10 07:32:12] 2026-01-10 06:31:41,752 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:32:12] 2026-01-10 06:31:41,774 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:32:12] 2026-01-10 06:31:42,193 | INFO     | all data control threads have been joined
[2026-01-10 07:32:12] 2026-01-10 06:31:42,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:32:12] 2026-01-10 06:31:42,461 | INFO     | aborting loop
[2026-01-10 07:32:12] 2026-01-10 06:31:42,514 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:42,658 | INFO     | [payload] control thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:42,788 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:42,933 | INFO     | [job] validate thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:42,942 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:43,076 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:43,086 | INFO     | all job control threads have been joined
[2026-01-10 07:32:12] 2026-01-10 06:31:43,198 | INFO     | [data] control thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:43,296 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:43,407 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:43,466 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:43,579 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:43,757 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:44,091 | INFO     | [job] control thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:44,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:32:12] 2026-01-10 06:31:45,480 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:45,780 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:31:52,037 | INFO     | job.realtimelogging is not enabled
[2026-01-10 07:32:12] 2026-01-10 06:31:53,042 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:32:12] 2026-01-10 06:32:01,506 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:32:12] 2026-01-10 06:32:02,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2026-01-10 07:32:12] 2026-01-10 06:32:07,335 | INFO     | all workflow threads have been joined
[2026-01-10 07:32:12] 2026-01-10 06:32:07,335 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:32:12] 2026-01-10 06:32:07,335 | INFO     | traces error code: 0
[2026-01-10 07:32:12] 2026-01-10 06:32:07,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:32:12] 2026-01-10 06:32:12,575 | INFO     | PID=23826 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 07:32:12] 2026-01-10 06:32:12,575 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:32:12] 2026-01-10 06:32:12,575 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:32:12] 2026-01-10 06:32:12,575 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:32:12] 2026-01-10 06:32:12,575 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:32:12] 2026-01-10 06:32:12,575 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 07:32:12] 2026-01-10 06:32:12,575 | INFO     | [monitor] control thread has ended
[2026-01-10 07:32:12] 2026-01-10 06:32:12,627 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:32:12] 2026-01-10 06:32:12,629 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:32:12] 2026-01-10 06:32:12,630 [wrapper] pilotpid: 23826
[2026-01-10 07:32:12] 2026-01-10 06:32:12,631 [wrapper] Pilot exit status: 0
[2026-01-10 07:32:12] 2026-01-10 06:32:12,636 [wrapper] pandaids: 6963381440
[2026-01-10 07:32:12] 2026-01-10 06:32:12,658 [wrapper] cleanup supervisor_pilot 32586 23828
[2026-01-10 07:32:12] 2026-01-10 06:32:12,659 [wrapper] Test setup, not cleaning
[2026-01-10 07:32:12] 2026-01-10 06:32:12,661 [wrapper] apfmon messages muted
[2026-01-10 07:32:12] 2026-01-10 06:32:12,662 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:32:12] 2026-01-10 06:32:12,663 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:32:12]  *** Error codes and diagnostics ***
[2026-01-10 07:32:12]     "exeErrorCode": 0,
[2026-01-10 07:32:12]     "exeErrorDiag": "",
[2026-01-10 07:32:12]     "pilotErrorCode": 0,
[2026-01-10 07:32:12]     "pilotErrorDiag": "",
[2026-01-10 07:32:12]  *** Listing of results directory ***
[2026-01-10 07:32:12] total 1167112
[2026-01-10 07:32:12] -rwx------ 1 mf493845 unix-user     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user      5112 Jan  9 08:21 queuedata.json
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user       100 Jan 10 01:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:32:12] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 01:01 run_atlas
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user       105 Jan 10 01:01 job.xml
[2026-01-10 07:32:12] -rw-r--r-- 2 mf493845 unix-user 394486946 Jan 10 02:41 EVNT.47962006._000030.pool.root.1
[2026-01-10 07:32:12] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:41 start_atlas.sh
[2026-01-10 07:32:12] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 02:41 shared
[2026-01-10 07:32:12] -rw-r--r-- 2 mf493845 unix-user    592619 Jan 10 02:41 input.tar.gz
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user      6389 Jan 10 02:41 init_data.xml
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user         0 Jan 10 02:41 boinc_setup_complete
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user      8192 Jan 10 02:41 boinc_mmap_file
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user         0 Jan 10 02:41 boinc_lockfile
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user      2892 Jan 10 02:41 pandaJob.out
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user    989382 Jan 10 02:41 agis_schedconf.cvmfs.json
[2026-01-10 07:32:12] drwx------ 5 mf493845 unix-user       440 Jan 10 02:41 pilot3
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user 788615343 Jan 10 07:31 HITS.47962010._001573.pool.root.1
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user      1029 Jan 10 07:31 memory_monitor_summary.json
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user        95 Jan 10 07:31 pilot_heartbeat.json
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user   1516240 Jan 10 07:31 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user   1556789 Jan 10 07:31 log.47962010._001573.job.log.tgz.1
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user      8563 Jan 10 07:31 heartbeat.json
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user       815 Jan 10 07:32 pilotlog.txt
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user   2504223 Jan 10 07:32 log.47962010._001573.job.log.1
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user       353 Jan 10 07:32 output.list
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user       620 Jan 10 07:32 runtime_log
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user   4085760 Jan 10 07:32 result.tar.gz
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user      9221 Jan 10 07:32 runtime_log.err
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user       650 Jan 10 07:32 2CbKDmRvLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKcmKDmCTkuVo.diag
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user     21593 Jan 10 07:32 stderr.txt
[2026-01-10 07:32:12] HITS file was successfully produced:
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user 788615343 Jan 10 07:31 shared/HITS.pool.root.1
[2026-01-10 07:32:12]  *** Contents of shared directory: ***
[2026-01-10 07:32:12] total 1159968
[2026-01-10 07:32:12] -rw-r--r-- 2 mf493845 unix-user 394486946 Jan 10 02:41 ATLAS.root_0
[2026-01-10 07:32:12] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:41 start_atlas.sh
[2026-01-10 07:32:12] -rw-r--r-- 2 mf493845 unix-user    592619 Jan 10 02:41 input.tar.gz
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user 788615343 Jan 10 07:31 HITS.pool.root.1
[2026-01-10 07:32:12] -rw------- 1 mf493845 unix-user   4085760 Jan 10 07:32 result.tar.gz
07:32:14 (16546): run_atlas exited; CPU time 132800.642365
07:32:14 (16546): called boinc_finish(0)

</stderr_txt>
]]>

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