Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:55:54 (4059975): wrapper (7.7.26015): starting
17:55:54 (4059975): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:55:54] Arguments: --nthreads 8
[2026-01-09 17:55:54] Threads: 8
[2026-01-09 17:55:54] Checking for CVMFS
[2026-01-09 17:55:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:55:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:55:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:55:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:55:57] 2.13.3.0 512609 17528 161564 154959 3 215 27537406 39288833 7910 16776704 0 8533922 99.311 17636080 40504 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 17:55:57] CVMFS is ok
[2026-01-09 17:55:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:55:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:55:57] Further information can be found at the LHC@home message board.
[2026-01-09 17:55:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:55:57] Checking for apptainer binary...
[2026-01-09 17:55:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:55:57] Running /usr/bin/apptainer --version
[2026-01-09 17:55:57] apptainer version 1.4.5-2.el9
[2026-01-09 17:55:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:55:58] c-210-7.aglt2.org
[2026-01-09 17:55:58] apptainer works
[2026-01-09 17:55:58] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:55:58] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:55:59] Starting ATLAS job with PandaID=6963381665
[2026-01-09 17:55:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 21:52:56]  *** The last 200 lines of the pilot log: ***
[2026-01-10 21:52:56] 2026-01-11 02:51:50,993 | INFO     | time since job start (100427s) is within the limit (349056.0s)
[2026-01-10 21:52:56] 2026-01-11 02:51:51,422 | INFO     | monitor loop #6190: job 0:6963381665 is in state 'finished'
[2026-01-10 21:52:56] 2026-01-11 02:51:51,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 21:52:56] 2026-01-11 02:51:53,000 | INFO     | time since job start (100430s) is within the limit (349056.0s)
[2026-01-10 21:52:56] 2026-01-11 02:51:53,927 | INFO     | monitor loop #6191: job 0:6963381665 is in state 'finished'
[2026-01-10 21:52:56] 2026-01-11 02:51:53,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 21:52:56] 2026-01-11 02:51:55,007 | INFO     | time since job start (100432s) is within the limit (349056.0s)
[2026-01-10 21:52:56] 2026-01-11 02:51:56,432 | INFO     | monitor loop #6192: job 0:6963381665 is in state 'finished'
[2026-01-10 21:52:56] 2026-01-11 02:51:56,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 21:52:56] 2026-01-11 02:51:57,014 | INFO     | time since job start (100434s) is within the limit (349056.0s)
[2026-01-10 21:52:56] 2026-01-11 02:51:58,936 | INFO     | monitor loop #6193: job 0:6963381665 is in state 'finished'
[2026-01-10 21:52:56] 2026-01-11 02:51:58,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 21:52:56] 2026-01-11 02:51:59,020 | INFO     | time since job start (100436s) is within the limit (349056.0s)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,027 | INFO     | time since job start (100438s) is within the limit (349056.0s)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,382 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 21:52:56] 2026-01-11 02:52:01,389 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1959250000004
[2026-01-10 21:52:56] 2026-01-11 02:52:01,396 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963381665/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,397 | INFO     | extracted standard info from prmon json
[2026-01-10 21:52:56] 2026-01-11 02:52:01,397 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 21:52:56] 2026-01-11 02:52:01,397 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 21:52:56] 2026-01-11 02:52:01,427 | INFO     | fitting pss+swap vs Time
[2026-01-10 21:52:56] 2026-01-11 02:52:01,430 | INFO     | sum of square deviations: 1375259966290.8337
[2026-01-10 21:52:56] 2026-01-11 02:52:01,449 | INFO     | monitor loop #6194: job 0:6963381665 is in state 'finished'
[2026-01-10 21:52:56] 2026-01-11 02:52:01,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,498 | INFO     | sum of deviations: 10089316319573.338
[2026-01-10 21:52:56] 2026-01-11 02:52:01,498 | INFO     | mean x: 1768049793.0992088
[2026-01-10 21:52:56] 2026-01-11 02:52:01,498 | INFO     | mean y: 2900187.556299452
[2026-01-10 21:52:56] 2026-01-11 02:52:01,499 | INFO     | intersect: -12968039175.599512
[2026-01-10 21:52:56] 2026-01-11 02:52:01,501 | INFO     | chi2: 22.38227627249764
[2026-01-10 21:52:56] 2026-01-11 02:52:01,503 | INFO     | sum of square deviations: 1362744381029.0564
[2026-01-10 21:52:56] 2026-01-11 02:52:01,570 | INFO     | sum of deviations: 10654566033120.57
[2026-01-10 21:52:56] 2026-01-11 02:52:01,571 | INFO     | mean x: 1768049640.6117215
[2026-01-10 21:52:56] 2026-01-11 02:52:01,571 | INFO     | mean y: 2907074.5543345544
[2026-01-10 21:52:56] 2026-01-11 02:52:01,571 | INFO     | intersect: -13820522989.055681
[2026-01-10 21:52:56] 2026-01-11 02:52:01,573 | INFO     | chi2: 19.046009462738994
[2026-01-10 21:52:56] 2026-01-11 02:52:01,573 | INFO     | current chi2=19.046009462738994 (change=14.905842324259513 %)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,574 | INFO     | right removable region: 1637
[2026-01-10 21:52:56] 2026-01-11 02:52:01,576 | INFO     | sum of square deviations: 1362740272679.0566
[2026-01-10 21:52:56] 2026-01-11 02:52:01,670 | INFO     | sum of deviations: 9389907256500.693
[2026-01-10 21:52:56] 2026-01-11 02:52:01,671 | INFO     | mean x: 1768049945.6117215
[2026-01-10 21:52:56] 2026-01-11 02:52:01,671 | INFO     | mean y: 2908707.141025641
[2026-01-10 21:52:56] 2026-01-11 02:52:01,671 | INFO     | intersect: -12179768613.693617
[2026-01-10 21:52:56] 2026-01-11 02:52:01,678 | INFO     | chi2: 17.68460366298455
[2026-01-10 21:52:56] 2026-01-11 02:52:01,679 | INFO     | current chi2=17.68460366298455 (change=20.988359505174124 %)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,679 | INFO     | left removable region: 10
[2026-01-10 21:52:56] 2026-01-11 02:52:01,686 | INFO     | sum of square deviations: 1335470027893.1602
[2026-01-10 21:52:56] 2026-01-11 02:52:01,762 | INFO     | sum of deviations: 9489612851547.467
[2026-01-10 21:52:56] 2026-01-11 02:52:01,763 | INFO     | mean x: 1768049915.1376767
[2026-01-10 21:52:56] 2026-01-11 02:52:01,763 | INFO     | mean y: 2924533.274738783
[2026-01-10 21:52:56] 2026-01-11 02:52:01,763 | INFO     | intersect: -12560524174.995472
[2026-01-10 21:52:56] 2026-01-11 02:52:01,765 | INFO     | chi2: 10.293506667630526
[2026-01-10 21:52:56] 2026-01-11 02:52:01,765 | INFO     | current memory leak: 7.11 B/s (using 1627 data points, chi2=10.29)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,767 | INFO     | could have reported an average CPU frequency of 2600 MHz (58 samples)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,767 | INFO     | ..............................
[2026-01-10 21:52:56] 2026-01-11 02:52:01,767 | INFO     | . Timing measurements:
[2026-01-10 21:52:56] 2026-01-11 02:52:01,767 | INFO     | . get job = 1 s
[2026-01-10 21:52:56] 2026-01-11 02:52:01,767 | INFO     | . initial setup = 14 s
[2026-01-10 21:52:56] 2026-01-11 02:52:01,767 | INFO     | . payload setup = 73 s
[2026-01-10 21:52:56] 2026-01-11 02:52:01,767 | INFO     | . stage-in = 0 s
[2026-01-10 21:52:56] 2026-01-11 02:52:01,768 | INFO     | . payload execution = 100220 s
[2026-01-10 21:52:56] 2026-01-11 02:52:01,768 | INFO     | . stage-out = 7 s
[2026-01-10 21:52:56] 2026-01-11 02:52:01,768 | INFO     | . log creation = 2 s
[2026-01-10 21:52:56] 2026-01-11 02:52:01,768 | INFO     | ..............................
[2026-01-10 21:52:56] 2026-01-11 02:52:01,876 | INFO     | 
[2026-01-10 21:52:56] 2026-01-11 02:52:01,877 | INFO     | job summary report
[2026-01-10 21:52:56] 2026-01-11 02:52:01,877 | INFO     | --------------------------------------------------
[2026-01-10 21:52:56] 2026-01-11 02:52:01,877 | INFO     | PanDA job id: 6963381665
[2026-01-10 21:52:56] 2026-01-11 02:52:01,877 | INFO     | task id: 47962010
[2026-01-10 21:52:56] 2026-01-11 02:52:01,877 | INFO     | errors: (none)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,877 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 21:52:56] 2026-01-11 02:52:01,877 | INFO     | pilot state: finished 
[2026-01-10 21:52:56] 2026-01-11 02:52:01,877 | INFO     | transexitcode: 0
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | exeerrorcode: 0
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | exeerrordiag: 
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | exitcode: 0
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | exitmsg: OK
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | cpuconsumptiontime: 311307 s
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | nevents: 900
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | neventsw: 0
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | pid: 4076314
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | pgrp: 4076314
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | corecount: 8
[2026-01-10 21:52:56] 2026-01-11 02:52:01,878 | INFO     | event service: False
[2026-01-10 21:52:56] 2026-01-11 02:52:01,879 | INFO     | sizes: {0: 2284453, 1: 2284652, 12: 2284652, 24: 2284680, 35: 2284708, 46: 2284736, 53: 2285154, 58: 2285182, 100298: 2355167, 100307: 2364161, 100308: 2364217, 10
[2026-01-10 21:52:56] 2026-01-11 02:52:01,879 | INFO     | --------------------------------------------------
[2026-01-10 21:52:56] 2026-01-11 02:52:01,879 | INFO     | 
[2026-01-10 21:52:56] 2026-01-11 02:52:01,879 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 21:52:56] 2026-01-11 02:52:01,906 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,907 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,907 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,907 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,907 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,907 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,907 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,907 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,907 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,908 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,908 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,908 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,908 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,908 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,908 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,908 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,908 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,908 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,908 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,909 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 21:52:56] 2026-01-11 02:52:01,909 | INFO     | job 6963381665 has completed (purged errors)
[2026-01-10 21:52:56] 2026-01-11 02:52:01,909 | INFO     | overall cleanup function is called
[2026-01-10 21:52:56] 2026-01-11 02:52:02,425 | INFO     | PID=4065705 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 21:52:56] 2026-01-11 02:52:02,426 | INFO     | .. there are 6 such processes running
[2026-01-10 21:52:56] 2026-01-11 02:52:02,927 | INFO     | --- collectZombieJob: --- 10, [4076314]
[2026-01-10 21:52:56] 2026-01-11 02:52:02,927 | INFO     | zombie collector waiting for pid 4076314
[2026-01-10 21:52:56] 2026-01-11 02:52:02,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 21:52:56] 2026-01-11 02:52:02,928 | INFO     | collected zombie processes
[2026-01-10 21:52:56] 2026-01-11 02:52:02,928 | INFO     | will attempt to kill all subprocesses of pid=4076314
[2026-01-10 21:52:56] 2026-01-11 02:52:03,397 | INFO     | process IDs to be killed: [4076314] (in reverse order)
[2026-01-10 21:52:56] 2026-01-11 02:52:03,463 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 21:52:56] 2026-01-11 02:52:03,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 21:52:56] 2026-01-11 02:52:03,471 | INFO     | did not find any defunct processes belonging to 4076314
[2026-01-10 21:52:56] 2026-01-11 02:52:03,479 | INFO     | did not find any defunct processes belonging to 4076314
[2026-01-10 21:52:56] 2026-01-11 02:52:03,479 | INFO     | ready for new job
[2026-01-10 21:52:56] 2026-01-11 02:52:03,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 21:52:56] 2026-01-11 02:52:03,487 | INFO     | ***************************************
[2026-01-10 21:52:56] 2026-01-11 02:52:03,487 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 21:52:56] 2026-01-11 02:52:03,487 | INFO     | ***************************************
[2026-01-10 21:52:56] 2026-01-11 02:52:03,487 | INFO     | 
[2026-01-10 21:52:56] 2026-01-11 02:52:03,489 | INFO     | architecture information:
[2026-01-10 21:52:56] 2026-01-11 02:52:03,490 | INFO     | executing command: cat /etc/os-release
[2026-01-10 21:52:56] 2026-01-11 02:52:03,504 | INFO     | cat /etc/os-release:
[2026-01-10 21:52:56] NAME="CentOS Linux"
[2026-01-10 21:52:56] VERSION="7 (Core)"
[2026-01-10 21:52:56] ID="centos"
[2026-01-10 21:52:56] ID_LIKE="rhel fedora"
[2026-01-10 21:52:56] VERSION_ID="7"
[2026-01-10 21:52:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 21:52:56] ANSI_COLOR="0;31"
[2026-01-10 21:52:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 21:52:56] HOME_URL="https://www.centos.org/"
[2026-01-10 21:52:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 21:52:56] 
[2026-01-10 21:52:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 21:52:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 21:52:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 21:52:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 21:52:56] 
[2026-01-10 21:52:56] 2026-01-11 02:52:03,504 | INFO     | ***************************************
[2026-01-10 21:52:56] 2026-01-11 02:52:04,007 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 21:52:56] 2026-01-11 02:52:04,068 | INFO     | sufficient remaining disk space (52851376128 B)
[2026-01-10 21:52:56] 2026-01-11 02:52:04,068 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 21:52:56] 2026-01-11 02:52:04,068 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 21:52:56] 2026-01-11 02:52:04,068 | INFO     | update_server=False
[2026-01-10 21:52:56] 2026-01-11 02:52:04,069 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 21:52:56] 2026-01-11 02:52:04,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 21:52:56] 2026-01-11 02:52:04,256 | INFO     | all job control threads have been joined
[2026-01-10 21:52:56] 2026-01-11 02:52:04,564 | INFO     | all data control threads have been joined
[2026-01-10 21:52:56] 2026-01-11 02:52:04,564 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 21:52:56] 2026-01-11 02:52:04,916 | INFO     | [monitor] cgroup control has ended
[2026-01-10 21:52:56] 2026-01-11 02:52:04,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 21:52:56] 2026-01-11 02:52:04,960 | INFO     | aborting loop
[2026-01-10 21:52:56] 2026-01-11 02:52:05,074 | INFO     | [job] retrieve thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:05,262 | INFO     | [job] control thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:05,348 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:05,390 | INFO     | all payload control threads have been joined
[2026-01-10 21:52:56] 2026-01-11 02:52:05,570 | INFO     | [data] control thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:05,782 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:05,807 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:05,933 | INFO     | [payload] validate_post thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:05,965 | INFO     | [job] job monitor thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:06,076 | INFO     | [data] copytool_out thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:06,320 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:06,396 | INFO     | [payload] control thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:06,495 | INFO     | [data] copytool_in thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:06,500 | INFO     | [job] validate thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:06,553 | INFO     | [payload] failed_post thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:06,891 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 21:52:56] 2026-01-11 02:52:07,897 | INFO     | [job] queue monitor thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:08,578 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 21:52:56] 2026-01-11 02:52:09,619 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140381082408768)>', '<ExcThread(monitor, started 140380687275776)>']
[2026-01-10 21:52:56] 2026-01-11 02:52:14,645 | INFO     | all workflow threads have been joined
[2026-01-10 21:52:56] 2026-01-11 02:52:14,645 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 21:52:56] 2026-01-11 02:52:14,646 | INFO     | traces error code: 0
[2026-01-10 21:52:56] 2026-01-11 02:52:14,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 21:52:56] 2026-01-11 02:52:34,945 | INFO     | PID=4065705 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 21:52:56] 2026-01-11 02:52:34,946 | INFO     | .. there are 6 such processes running
[2026-01-10 21:52:56] 2026-01-11 02:52:34,947 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 21:52:56] 2026-01-11 02:52:34,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 21:52:56] 2026-01-11 02:52:34,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 21:52:56] 2026-01-11 02:52:34,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 21:52:56] 2026-01-11 02:52:34,947 | INFO     | [monitor] control thread has ended
[2026-01-10 21:52:56] 2026-01-11 02:52:35,514 [wrapper] ==== pilot stdout END ====
[2026-01-10 21:52:56] 2026-01-11 02:52:35,555 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 21:52:56] 2026-01-11 02:52:35,636 [wrapper] pilotpid: 4065705
[2026-01-10 21:52:56] 2026-01-11 02:52:35,677 [wrapper] Pilot exit status: 0
[2026-01-10 21:52:56] 2026-01-11 02:52:35,862 [wrapper] pandaids: 6963381665
[2026-01-10 21:52:56] 2026-01-11 02:52:36,306 [wrapper] cleanup supervisor_pilot 2143818 4065706
[2026-01-10 21:52:56] 2026-01-11 02:52:36,337 [wrapper] Test setup, not cleaning
[2026-01-10 21:52:56] 2026-01-11 02:52:36,383 [wrapper] apfmon messages muted
[2026-01-10 21:52:56] 2026-01-11 02:52:36,419 [wrapper] ==== wrapper stdout END ====
[2026-01-10 21:52:56] 2026-01-11 02:52:36,454 [wrapper] ==== wrapper stderr END ====
[2026-01-10 21:52:56]  *** Error codes and diagnostics ***
[2026-01-10 21:52:56]     "exeErrorCode": 0,
[2026-01-10 21:52:56]     "exeErrorDiag": "",
[2026-01-10 21:52:56]     "pilotErrorCode": 0,
[2026-01-10 21:52:56]     "pilotErrorDiag": "",
[2026-01-10 21:52:56]  *** Listing of results directory ***
[2026-01-10 21:52:56] total 1203320
[2026-01-10 21:52:56] -rwx------. 1 boincer umatlas     36322 Jan  9 02:17 runpilot2-wrapper.sh
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:20 pilot3.tar.gz
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:21 queuedata.json
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas       100 Jan  9 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 21:52:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 17:55 run_atlas
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas       105 Jan  9 17:55 job.xml
[2026-01-10 21:52:56] -rw-r--r--. 2 boincer umatlas 391872885 Jan  9 17:55 EVNT.47962006._000119.pool.root.1
[2026-01-10 21:52:56] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:55 start_atlas.sh
[2026-01-10 21:52:56] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 17:55 shared
[2026-01-10 21:52:56] -rw-r--r--. 2 boincer umatlas    592616 Jan  9 17:55 input.tar.gz
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas         0 Jan  9 17:55 boinc_lockfile
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas      2893 Jan  9 17:55 pandaJob.out
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas        57 Jan  9 17:56 setup.sh.local
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas    989375 Jan  9 17:57 agis_schedconf.cvmfs.json
[2026-01-10 21:52:56] drwx------. 5 boincer umatlas      4096 Jan  9 17:58 pilot3
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas       533 Jan 10 21:26 boinc_task_state.xml
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas      6661 Jan 10 21:49 init_data.xml
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas 805459264 Jan 10 21:50 HITS.47962010._001725.pool.root.1
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas      1059 Jan 10 21:51 memory_monitor_summary.json
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas   1516240 Jan 10 21:51 agis_ddmendpoints.agis.ALL.json
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas   2615668 Jan 10 21:51 log.47962010._001725.job.log.tgz.1
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas      8623 Jan 10 21:52 heartbeat.json
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas        95 Jan 10 21:52 pilot_heartbeat.json
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas       822 Jan 10 21:52 pilotlog.txt
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas  12857486 Jan 10 21:52 log.47962010._001725.job.log.1
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas       353 Jan 10 21:52 output.list
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas       620 Jan 10 21:52 runtime_log
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas  15493120 Jan 10 21:52 result.tar.gz
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas      9339 Jan 10 21:52 runtime_log.err
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas       661 Jan 10 21:52 3OoLDmRvLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNdmKDmCueAWo.diag
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 21:52 boinc_mmap_file
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas        29 Jan 10 21:52 wrapper_checkpoint.txt
[2026-01-10 21:52:56] -rw-r--r--. 1 boincer umatlas     21557 Jan 10 21:52 stderr.txt
[2026-01-10 21:52:56] HITS file was successfully produced:
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas 805459264 Jan 10 21:50 shared/HITS.pool.root.1
[2026-01-10 21:52:56]  *** Contents of shared directory: ***
[2026-01-10 21:52:56] total 1185008
[2026-01-10 21:52:56] -rw-r--r--. 2 boincer umatlas 391872885 Jan  9 17:55 ATLAS.root_0
[2026-01-10 21:52:56] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:55 start_atlas.sh
[2026-01-10 21:52:56] -rw-r--r--. 2 boincer umatlas    592616 Jan  9 17:55 input.tar.gz
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas 805459264 Jan 10 21:50 HITS.pool.root.1
[2026-01-10 21:52:56] -rw-------. 1 boincer umatlas  15493120 Jan 10 21:52 result.tar.gz
21:52:58 (4059975): run_atlas exited; CPU time 312792.209607
21:52:58 (4059975): called boinc_finish(0)

</stderr_txt>
]]>

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