Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:59:46 (434199): wrapper (7.7.26015): starting
00:59:46 (434199): wrapper: running run_atlas (--nthreads 3)
[2026-01-11 00:59:46] Arguments: --nthreads 3
[2026-01-11 00:59:46] Threads: 3
[2026-01-11 00:59:46] Checking for CVMFS
[2026-01-11 00:59:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 00:59:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 00:59:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 00:59:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 00:59:46] 2.9.2.0 185998 138966 109316 154997 3 57 20515889 36864001 12 130560 1 43794693 99.971 4744534 1609 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-11 00:59:46] CVMFS is ok
[2026-01-11 00:59:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 00:59:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 00:59:46] Further information can be found at the LHC@home message board.
[2026-01-11 00:59:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 00:59:46] Checking for apptainer binary...
[2026-01-11 00:59:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 00:59:46] Running /usr/bin/apptainer --version
[2026-01-11 00:59:46] apptainer version 1.4.1-1.1
[2026-01-11 00:59:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 00:59:46] thA387a
[2026-01-11 00:59:46] apptainer works
[2026-01-11 00:59:46] Set ATHENA_PROC_NUMBER=3
[2026-01-11 00:59:46] Set ATHENA_CORE_NUMBER=3
[2026-01-11 00:59:46] Starting ATLAS job with PandaID=6963165539
[2026-01-11 00:59:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 02:55:06]  *** The last 200 lines of the pilot log: ***
[2026-01-11 02:55:06] 2026-01-11 01:54:23,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 02:55:06] 2026-01-11 01:54:23,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 02:55:06] 2026-01-11 01:54:23,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 02:55:06] 2026-01-11 01:54:23,320 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 02:55:06] 2026-01-11 01:54:23,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 02:55:06] 2026-01-11 01:54:23,320 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 02:55:06] 2026-01-11 01:54:23,320 | INFO     | job 6963165539 has completed (purged errors)
[2026-01-11 02:55:06] 2026-01-11 01:54:23,320 | INFO     | overall cleanup function is called
[2026-01-11 02:55:06] 2026-01-11 01:54:24,327 | INFO     | --- collectZombieJob: --- 10, [444397]
[2026-01-11 02:55:06] 2026-01-11 01:54:24,327 | INFO     | zombie collector waiting for pid 444397
[2026-01-11 02:55:06] 2026-01-11 01:54:24,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 02:55:06] 2026-01-11 01:54:24,327 | INFO     | collected zombie processes
[2026-01-11 02:55:06] 2026-01-11 01:54:24,327 | INFO     | will attempt to kill all subprocesses of pid=444397
[2026-01-11 02:55:06] 2026-01-11 01:54:24,369 | INFO     | process IDs to be killed: [444397] (in reverse order)
[2026-01-11 02:55:06] 2026-01-11 01:54:24,393 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 02:55:06] 2026-01-11 01:54:24,393 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 02:55:06] 2026-01-11 01:54:24,395 | INFO     | did not find any defunct processes belonging to 444397
[2026-01-11 02:55:06] 2026-01-11 01:54:24,396 | INFO     | did not find any defunct processes belonging to 444397
[2026-01-11 02:55:06] 2026-01-11 01:54:24,396 | INFO     | ready for new job
[2026-01-11 02:55:06] 2026-01-11 01:54:24,396 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 02:55:06] 2026-01-11 01:54:24,397 | INFO     | ***************************************
[2026-01-11 02:55:06] 2026-01-11 01:54:24,397 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 02:55:06] 2026-01-11 01:54:24,397 | INFO     | ***************************************
[2026-01-11 02:55:06] 2026-01-11 01:54:24,397 | INFO     | 
[2026-01-11 02:55:06] 2026-01-11 01:54:24,397 | INFO     | architecture information:
[2026-01-11 02:55:06] 2026-01-11 01:54:24,397 | INFO     | executing command: cat /etc/os-release
[2026-01-11 02:55:06] 2026-01-11 01:54:24,405 | INFO     | cat /etc/os-release:
[2026-01-11 02:55:06] NAME="CentOS Linux"
[2026-01-11 02:55:06] VERSION="7 (Core)"
[2026-01-11 02:55:06] ID="centos"
[2026-01-11 02:55:06] ID_LIKE="rhel fedora"
[2026-01-11 02:55:06] VERSION_ID="7"
[2026-01-11 02:55:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 02:55:06] ANSI_COLOR="0;31"
[2026-01-11 02:55:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 02:55:06] HOME_URL="https://www.centos.org/"
[2026-01-11 02:55:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 02:55:06] 
[2026-01-11 02:55:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 02:55:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 02:55:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 02:55:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 02:55:06] 
[2026-01-11 02:55:06] 2026-01-11 01:54:24,406 | INFO     | ***************************************
[2026-01-11 02:55:06] 2026-01-11 01:54:24,908 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-11 02:55:06] 2026-01-11 01:54:24,919 | INFO     | sufficient remaining disk space (240939696128 B)
[2026-01-11 02:55:06] 2026-01-11 01:54:24,919 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 02:55:06] 2026-01-11 01:54:24,919 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 02:55:06] 2026-01-11 01:54:24,919 | INFO     | update_server=False
[2026-01-11 02:55:06] 2026-01-11 01:54:24,919 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 02:55:06] 2026-01-11 01:54:24,920 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 02:55:06] 2026-01-11 01:54:25,280 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 02:55:06] 2026-01-11 01:54:25,280 | INFO     | aborting loop
[2026-01-11 02:55:06] 2026-01-11 01:54:25,925 | INFO     | [job] retrieve thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:25,925 | INFO     | [job] queue monitor thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:25,948 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:25,981 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:25,999 | INFO     | all data control threads have been joined
[2026-01-11 02:55:06] 2026-01-11 01:54:26,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 02:55:06] 2026-01-11 01:54:26,109 | INFO     | all job control threads have been joined
[2026-01-11 02:55:06] 2026-01-11 01:54:26,192 | INFO     | all payload control threads have been joined
[2026-01-11 02:55:06] 2026-01-11 01:54:26,222 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:26,284 | INFO     | [job] job monitor thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:26,401 | INFO     | [payload] validate_post thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:26,511 | INFO     | [payload] failed_post thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:26,803 | INFO     | [data] copytool_in thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:26,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 02:55:06] 2026-01-11 01:54:27,005 | INFO     | [data] control thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:27,115 | INFO     | [job] control thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:27,175 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:27,197 | INFO     | [payload] control thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:27,368 | INFO     | [job] validate thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:28,087 | INFO     | [data] copytool_out thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:30,922 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 02:55:06] 2026-01-11 01:54:54,828 | INFO     | PID=437924 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 02:55:06] 2026-01-11 01:54:54,828 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 02:55:06] 2026-01-11 01:54:54,828 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 02:55:06] 2026-01-11 01:54:54,828 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 02:55:06] 2026-01-11 01:54:59,945 | INFO     | [monitor] cgroup control has ended
[2026-01-11 02:55:06] 2026-01-11 01:55:01,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140194184365888)>', '<ExcThread(monitor, started 140193554224896)>']
[2026-01-11 02:55:06] 2026-01-11 01:55:01,866 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 02:55:06] 2026-01-11 01:55:01,866 | INFO     | [monitor] control thread has ended
[2026-01-11 02:55:06] 2026-01-11 01:55:06,411 | INFO     | all workflow threads have been joined
[2026-01-11 02:55:06] 2026-01-11 01:55:06,411 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 02:55:06] 2026-01-11 01:55:06,412 | INFO     | traces error code: 0
[2026-01-11 02:55:06] 2026-01-11 01:55:06,412 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 02:55:06] 2026-01-11 01:55:06,460 [wrapper] ==== pilot stdout END ====
[2026-01-11 02:55:06] 2026-01-11 01:55:06,462 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 02:55:06] 2026-01-11 01:55:06,465 [wrapper] pilotpid: 437924
[2026-01-11 02:55:06] 2026-01-11 01:55:06,467 [wrapper] Pilot exit status: 0
[2026-01-11 02:55:06] 2026-01-11 01:55:06,474 [wrapper] pandaids: 6963165539
[2026-01-11 02:55:06] 2026-01-11 01:55:06,490 [wrapper] cleanup supervisor_pilot  458878 437925
[2026-01-11 02:55:06] 2026-01-11 01:55:06,493 [wrapper] Test setup, not cleaning
[2026-01-11 02:55:06] 2026-01-11 01:55:06,495 [wrapper] apfmon messages muted
[2026-01-11 02:55:06] 2026-01-11 01:55:06,497 [wrapper] ==== wrapper stdout END ====
[2026-01-11 02:55:06] 2026-01-11 01:55:06,500 [wrapper] ==== wrapper stderr END ====
[2026-01-11 02:55:06]  *** Error codes and diagnostics ***
[2026-01-11 02:55:06]     "exeErrorCode": 0,
[2026-01-11 02:55:06]     "exeErrorDiag": "",
[2026-01-11 02:55:06]     "pilotErrorCode": 0,
[2026-01-11 02:55:06]     "pilotErrorDiag": "",
[2026-01-11 02:55:06]  *** Listing of results directory ***
[2026-01-11 02:55:06] total 437680
[2026-01-11 02:55:06] -rwx------ 1 boinc boinc     36322 Jan  9 01:56 runpilot2-wrapper.sh
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:56 queuedata.json
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc       100 Jan 11 00:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 02:55:06] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 00:59 run_atlas
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc       105 Jan 11 00:59 job.xml
[2026-01-11 02:55:06] -rw-r--r-- 2 boinc boinc 222838067 Jan 11 00:59 EVNT.47898824._001346.pool.root.1
[2026-01-11 02:55:06] -rw-r--r-- 2 boinc boinc    592392 Jan 11 00:59 input.tar.gz
[2026-01-11 02:55:06] -rw-r--r-- 2 boinc boinc     15847 Jan 11 00:59 start_atlas.sh
[2026-01-11 02:55:06] drwxrwx--x 2 boinc boinc      4096 Jan 11 00:59 shared
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc         0 Jan 11 00:59 boinc_setup_complete
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc      6440 Jan 11 00:59 init_data.xml
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc         0 Jan 11 00:59 boinc_lockfile
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc      2520 Jan 11 00:59 pandaJob.out
[2026-01-11 02:55:06] -rw------- 1 boinc boinc    989548 Jan 11 00:59 agis_schedconf.cvmfs.json
[2026-01-11 02:55:06] -rw------- 1 boinc boinc   1516240 Jan 11 00:59 agis_ddmendpoints.agis.ALL.json
[2026-01-11 02:55:06] drwx------ 5 boinc boinc      4096 Jan 11 00:59 pilot3
[2026-01-11 02:55:06] -rw------- 1 boinc boinc 218904130 Jan 11 02:53 HITS.47898826._034758.pool.root.1
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc       529 Jan 11 02:54 boinc_task_state.xml
[2026-01-11 02:55:06] -rw------- 1 boinc boinc      1021 Jan 11 02:54 memory_monitor_summary.json
[2026-01-11 02:55:06] -rw------- 1 boinc boinc    279789 Jan 11 02:54 log.47898826._034758.job.log.tgz.1
[2026-01-11 02:55:06] -rw------- 1 boinc boinc      7757 Jan 11 02:54 heartbeat.json
[2026-01-11 02:55:06] -rw------- 1 boinc boinc        95 Jan 11 02:54 pilot_heartbeat.json
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc        27 Jan 11 02:55 wrapper_checkpoint.txt
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc      8192 Jan 11 02:55 boinc_mmap_file
[2026-01-11 02:55:06] -rw------- 1 boinc boinc      4751 Jan 11 02:55 pilotlog.txt
[2026-01-11 02:55:06] -rw------- 1 boinc boinc    990672 Jan 11 02:55 log.47898826._034758.job.log.1
[2026-01-11 02:55:06] -rw------- 1 boinc boinc       357 Jan 11 02:55 output.list
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc       620 Jan 11 02:55 runtime_log
[2026-01-11 02:55:06] -rw------- 1 boinc boinc   1290240 Jan 11 02:55 result.tar.gz
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc      8902 Jan 11 02:55 runtime_log.err
[2026-01-11 02:55:06] -rw------- 1 boinc boinc       660 Jan 11 02:55 6LqNDm2yFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjVgKDm6lko7n.diag
[2026-01-11 02:55:06] -rw-r--r-- 1 boinc boinc     11414 Jan 11 02:55 stderr.txt
[2026-01-11 02:55:06] HITS file was successfully produced:
[2026-01-11 02:55:06] -rw------- 1 boinc boinc 218904130 Jan 11 02:53 shared/HITS.pool.root.1
[2026-01-11 02:55:06]  *** Contents of shared directory: ***
[2026-01-11 02:55:06] total 433256
[2026-01-11 02:55:06] -rw-r--r-- 2 boinc boinc 222838067 Jan 11 00:59 ATLAS.root_0
[2026-01-11 02:55:06] -rw-r--r-- 2 boinc boinc    592392 Jan 11 00:59 input.tar.gz
[2026-01-11 02:55:06] -rw-r--r-- 2 boinc boinc     15847 Jan 11 00:59 start_atlas.sh
[2026-01-11 02:55:06] -rw------- 1 boinc boinc 218904130 Jan 11 02:53 HITS.pool.root.1
[2026-01-11 02:55:06] -rw------- 1 boinc boinc   1290240 Jan 11 02:55 result.tar.gz
02:55:08 (434199): run_atlas exited; CPU time 19832.326749
02:55:08 (434199): called boinc_finish(0)

</stderr_txt>
]]>

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