Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:42:29 (20688): wrapper (7.7.26015): starting
02:42:29 (20688): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 02:42:29] Arguments: --nthreads 8
[2026-01-10 02:42:29] Threads: 8
[2026-01-10 02:42:29] Checking for CVMFS
[2026-01-10 02:42:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:42:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:42:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:42:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:42:29] 2.11.0.0 4712 52849 77620 154963 1 127 2764227 4096000 413 130560 1 2008505 99.177 4184190 620 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 02:42:29] CVMFS is ok
[2026-01-10 02:42:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:42:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:42:29] Further information can be found at the LHC@home message board.
[2026-01-10 02:42:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:42:29] Checking for apptainer binary...
[2026-01-10 02:42:29] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 02:42:29] apptainer is not installed, using version from CVMFS
[2026-01-10 02:42:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:42:30] WARNING: Environment variable TMPDIR already has value [/tmp/job_11009999/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node041
[2026-01-10 02:42:30] apptainer works
[2026-01-10 02:42:30] Set ATHENA_PROC_NUMBER=8
[2026-01-10 02:42:30] Set ATHENA_CORE_NUMBER=8
[2026-01-10 02:42:30] Starting ATLAS job with PandaID=6963381442
[2026-01-10 02:42:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11009999/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:35:09]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:35:09] 2026-01-10 06:34:31,643 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 07:35:09] 2026-01-10 06:34:31,941 | INFO     | monitor loop #1278: job 0:6963381442 is in state 'finished'
[2026-01-10 07:35:09] 2026-01-10 06:34:31,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 07:35:09] 2026-01-10 06:34:32,579 | INFO     | time since job start (17517s) is within the limit (349056.0s)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,269 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 07:35:09] 2026-01-10 06:34:33,286 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2536.85040625
[2026-01-10 07:35:09] 2026-01-10 06:34:33,291 | INFO     | using path: /tmp/job_11009999/atlas/pilot/slots/0/PanDA_Pilot-6963381442/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,291 | INFO     | extracted standard info from prmon json
[2026-01-10 07:35:09] 2026-01-10 06:34:33,291 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 07:35:09] 2026-01-10 06:34:33,291 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 07:35:09] 2026-01-10 06:34:33,294 | INFO     | fitting pss+swap vs Time
[2026-01-10 07:35:09] 2026-01-10 06:34:33,294 | INFO     | sum of square deviations: 7330250928.0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,295 | INFO     | sum of deviations: 1138285422543.0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,295 | INFO     | mean x: 1768018095.0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,295 | INFO     | mean y: 3542164.9825783973
[2026-01-10 07:35:09] 2026-01-10 06:34:33,295 | INFO     | intersect: -274544934292.13126
[2026-01-10 07:35:09] 2026-01-10 06:34:33,296 | INFO     | chi2: 6.144411947824278
[2026-01-10 07:35:09] 2026-01-10 06:34:33,296 | INFO     | sum of square deviations: 6953769450.5
[2026-01-10 07:35:09] 2026-01-10 06:34:33,297 | INFO     | sum of deviations: 1169235628528.9998
[2026-01-10 07:35:09] 2026-01-10 06:34:33,297 | INFO     | mean x: 1768017942.5
[2026-01-10 07:35:09] 2026-01-10 06:34:33,297 | INFO     | mean y: 3554377.014184397
[2026-01-10 07:35:09] 2026-01-10 06:34:33,297 | INFO     | intersect: -297278313387.6549
[2026-01-10 07:35:09] 2026-01-10 06:34:33,297 | INFO     | chi2: 4.571098341496238
[2026-01-10 07:35:09] 2026-01-10 06:34:33,297 | INFO     | current chi2=4.571098341496238 (change=25.60560098652153 %)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,298 | INFO     | sum of square deviations: 6590404498.0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,299 | INFO     | sum of deviations: 1101265591690.0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,299 | INFO     | mean x: 1768017790.0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,299 | INFO     | mean y: 3525847.6534296027
[2026-01-10 07:35:09] 2026-01-10 06:34:33,299 | INFO     | intersect: -295434661324.8748
[2026-01-10 07:35:09] 2026-01-10 06:34:33,299 | INFO     | chi2: 4.544764980535522
[2026-01-10 07:35:09] 2026-01-10 06:34:33,299 | INFO     | current chi2=4.544764980535522 (change=0.5760838860468733 %)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,299 | INFO     | right removable region: 276
[2026-01-10 07:35:09] 2026-01-10 06:34:33,299 | INFO     | sum of square deviations: 6953769450.5
[2026-01-10 07:35:09] 2026-01-10 06:34:33,300 | INFO     | sum of deviations: 1004356125902.9996
[2026-01-10 07:35:09] 2026-01-10 06:34:33,300 | INFO     | mean x: 1768018247.5
[2026-01-10 07:35:09] 2026-01-10 06:34:33,300 | INFO     | mean y: 3596357.843971631
[2026-01-10 07:35:09] 2026-01-10 06:34:33,300 | INFO     | intersect: -255357178862.7424
[2026-01-10 07:35:09] 2026-01-10 06:34:33,300 | INFO     | chi2: 2.725742667089565
[2026-01-10 07:35:09] 2026-01-10 06:34:33,301 | INFO     | current chi2=2.725742667089565 (change=55.63867315154961 %)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,301 | INFO     | sum of square deviations: 6590404498.0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,302 | INFO     | sum of deviations: 946514728594.9999
[2026-01-10 07:35:09] 2026-01-10 06:34:33,302 | INFO     | mean x: 1768018400.0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,302 | INFO     | mean y: 3620568.2815884477
[2026-01-10 07:35:09] 2026-01-10 06:34:33,302 | INFO     | intersect: -253919405937.11908
[2026-01-10 07:35:09] 2026-01-10 06:34:33,302 | INFO     | chi2: 2.531420852591256
[2026-01-10 07:35:09] 2026-01-10 06:34:33,302 | INFO     | current chi2=2.531420852591256 (change=7.129132799091323 %)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,302 | INFO     | left removable region: 20
[2026-01-10 07:35:09] 2026-01-10 06:34:33,302 | INFO     | sum of square deviations: 5202255680.0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,303 | INFO     | sum of deviations: 829194269083.5
[2026-01-10 07:35:09] 2026-01-10 06:34:33,303 | INFO     | mean x: 1768018369.5
[2026-01-10 07:35:09] 2026-01-10 06:34:33,303 | INFO     | mean y: 3637350.55078125
[2026-01-10 07:35:09] 2026-01-10 06:34:33,303 | INFO     | intersect: -281803099919.1856
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | chi2: 0.7216944351287057
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | current memory leak: 159.39 B/s (using 256 data points, chi2=0.72)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | could have reported an average CPU frequency of 2758 MHz (13 samples)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | ..............................
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | . Timing measurements:
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | . get job = 0 s
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | . initial setup = 1 s
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | . payload setup = 2 s
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | . stage-in = 0 s
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | . payload execution = 17493 s
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | . stage-out = 1 s
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | . log creation = 0 s
[2026-01-10 07:35:09] 2026-01-10 06:34:33,304 | INFO     | ..............................
[2026-01-10 07:35:09] 2026-01-10 06:34:33,353 | INFO     | 
[2026-01-10 07:35:09] 2026-01-10 06:34:33,353 | INFO     | job summary report
[2026-01-10 07:35:09] 2026-01-10 06:34:33,353 | INFO     | --------------------------------------------------
[2026-01-10 07:35:09] 2026-01-10 06:34:33,353 | INFO     | PanDA job id: 6963381442
[2026-01-10 07:35:09] 2026-01-10 06:34:33,353 | INFO     | task id: 47962010
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | errors: (none)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | pilot state: finished 
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | transexitcode: 0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | exeerrorcode: 0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | exeerrordiag: 
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | exitcode: 0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | exitmsg: OK
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | cpuconsumptiontime: 132083 s
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | nevents: 900
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | neventsw: 0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | pid: 12995
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | pgrp: 12995
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | corecount: 8
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | event service: False
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | sizes: {0: 2284748, 2: 2285010, 11: 2285038, 17498: 2317987, 17499: 2317986, 17500: 2327066, 17503: 2327250, 17505: 2327496}
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | --------------------------------------------------
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | 
[2026-01-10 07:35:09] 2026-01-10 06:34:33,354 | INFO     | executing command: ls -lF /tmp/job_11009999/atlas/pilot/slots/0
[2026-01-10 07:35:09] 2026-01-10 06:34:33,363 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,363 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,363 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | job 6963381442 has completed (purged errors)
[2026-01-10 07:35:09] 2026-01-10 06:34:33,364 | INFO     | overall cleanup function is called
[2026-01-10 07:35:09] 2026-01-10 06:34:34,372 | INFO     | --- collectZombieJob: --- 10, [12995]
[2026-01-10 07:35:09] 2026-01-10 06:34:34,372 | INFO     | zombie collector waiting for pid 12995
[2026-01-10 07:35:09] 2026-01-10 06:34:34,372 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:35:09] 2026-01-10 06:34:34,372 | INFO     | collected zombie processes
[2026-01-10 07:35:09] 2026-01-10 06:34:34,372 | INFO     | will attempt to kill all subprocesses of pid=12995
[2026-01-10 07:35:09] 2026-01-10 06:34:34,474 | INFO     | process IDs to be killed: [12995] (in reverse order)
[2026-01-10 07:35:09] 2026-01-10 06:34:34,513 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:35:09] 2026-01-10 06:34:34,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:35:09] 2026-01-10 06:34:34,516 | INFO     | did not find any defunct processes belonging to 12995
[2026-01-10 07:35:09] 2026-01-10 06:34:34,520 | INFO     | did not find any defunct processes belonging to 12995
[2026-01-10 07:35:09] 2026-01-10 06:34:34,520 | INFO     | ready for new job
[2026-01-10 07:35:09] 2026-01-10 06:34:34,520 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:35:09] 2026-01-10 06:34:34,521 | INFO     | ***************************************
[2026-01-10 07:35:09] 2026-01-10 06:34:34,521 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:35:09] 2026-01-10 06:34:34,521 | INFO     | ***************************************
[2026-01-10 07:35:09] 2026-01-10 06:34:34,521 | INFO     | 
[2026-01-10 07:35:09] 2026-01-10 06:34:34,535 | INFO     | architecture information:
[2026-01-10 07:35:09] 2026-01-10 06:34:34,535 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:35:09] 2026-01-10 06:34:34,542 | INFO     | cat /etc/os-release:
[2026-01-10 07:35:09] NAME="CentOS Linux"
[2026-01-10 07:35:09] VERSION="7 (Core)"
[2026-01-10 07:35:09] ID="centos"
[2026-01-10 07:35:09] ID_LIKE="rhel fedora"
[2026-01-10 07:35:09] VERSION_ID="7"
[2026-01-10 07:35:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:35:09] ANSI_COLOR="0;31"
[2026-01-10 07:35:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:35:09] HOME_URL="https://www.centos.org/"
[2026-01-10 07:35:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:35:09] 
[2026-01-10 07:35:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:35:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:35:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:35:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:35:09] 
[2026-01-10 07:35:09] 2026-01-10 06:34:34,542 | INFO     | ***************************************
[2026-01-10 07:35:09] 2026-01-10 06:34:35,044 | INFO     | executing command: df -mP /tmp/job_11009999/atlas/pilot/slots/0
[2026-01-10 07:35:09] 2026-01-10 06:34:35,051 | INFO     | sufficient remaining disk space (218654310400 B)
[2026-01-10 07:35:09] 2026-01-10 06:34:35,051 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:35:09] 2026-01-10 06:34:35,051 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:35:09] 2026-01-10 06:34:35,051 | INFO     | update_server=False
[2026-01-10 07:35:09] 2026-01-10 06:34:35,051 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:35:09] 2026-01-10 06:34:35,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:35:09] 2026-01-10 06:34:35,449 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:35:09] 2026-01-10 06:34:35,449 | INFO     | aborting loop
[2026-01-10 07:35:09] 2026-01-10 06:34:36,056 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:36,056 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:36,101 | INFO     | all data control threads have been joined
[2026-01-10 07:35:09] 2026-01-10 06:34:36,112 | INFO     | [job] validate thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:36,253 | INFO     | all job control threads have been joined
[2026-01-10 07:35:09] 2026-01-10 06:34:36,275 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:36,353 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:35:09] 2026-01-10 06:34:36,357 | INFO     | all payload control threads have been joined
[2026-01-10 07:35:09] 2026-01-10 06:34:36,451 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:36,454 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:36,494 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:36,533 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:35:09] 2026-01-10 06:34:36,679 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:36,919 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:37,106 | INFO     | [data] control thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:37,258 | INFO     | [job] control thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:37,357 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:37,363 | INFO     | [payload] control thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:37,504 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:38,358 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:34:40,538 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:35:09] 2026-01-10 06:35:03,754 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:35:09] 2026-01-10 06:35:04,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2026-01-10 07:35:09] 2026-01-10 06:35:05,771 | INFO     | PID=29642 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 07:35:09] 2026-01-10 06:35:05,771 | INFO     | .. there are 4 such processes running
[2026-01-10 07:35:09] 2026-01-10 06:35:05,771 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:35:09] 2026-01-10 06:35:05,771 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:35:09] 2026-01-10 06:35:05,771 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:35:09] 2026-01-10 06:35:05,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:35:09] 2026-01-10 06:35:05,771 | INFO     | [monitor] control thread has ended
[2026-01-10 07:35:09] 2026-01-10 06:35:09,357 | INFO     | all workflow threads have been joined
[2026-01-10 07:35:09] 2026-01-10 06:35:09,357 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:35:09] 2026-01-10 06:35:09,357 | INFO     | traces error code: 0
[2026-01-10 07:35:09] 2026-01-10 06:35:09,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:35:09] 2026-01-10 06:35:09,410 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:35:09] 2026-01-10 06:35:09,412 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:35:09] 2026-01-10 06:35:09,413 [wrapper] pilotpid: 29642
[2026-01-10 07:35:09] 2026-01-10 06:35:09,415 [wrapper] Pilot exit status: 0
[2026-01-10 07:35:09] 2026-01-10 06:35:09,418 [wrapper] pandaids: 6963381442
[2026-01-10 07:35:09] 2026-01-10 06:35:09,443 [wrapper] cleanup supervisor_pilot 12918 29643
[2026-01-10 07:35:09] 2026-01-10 06:35:09,444 [wrapper] Test setup, not cleaning
[2026-01-10 07:35:09] 2026-01-10 06:35:09,445 [wrapper] apfmon messages muted
[2026-01-10 07:35:09] 2026-01-10 06:35:09,446 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:35:09] 2026-01-10 06:35:09,448 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:35:09]  *** Error codes and diagnostics ***
[2026-01-10 07:35:09]     "exeErrorCode": 0,
[2026-01-10 07:35:09]     "exeErrorDiag": "",
[2026-01-10 07:35:09]     "pilotErrorCode": 0,
[2026-01-10 07:35:09]     "pilotErrorDiag": "",
[2026-01-10 07:35:09]  *** Listing of results directory ***
[2026-01-10 07:35:09] total 1174692
[2026-01-10 07:35:09] -rwx------ 1 mf493845 unix-user     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user      5112 Jan  9 08:21 queuedata.json
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user       100 Jan 10 01:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:35:09] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 01:02 run_atlas
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user       105 Jan 10 01:02 job.xml
[2026-01-10 07:35:09] -rw-r--r-- 2 mf493845 unix-user 394486946 Jan 10 02:42 EVNT.47962006._000030.pool.root.1
[2026-01-10 07:35:09] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:42 start_atlas.sh
[2026-01-10 07:35:09] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 02:42 shared
[2026-01-10 07:35:09] -rw-r--r-- 2 mf493845 unix-user    592614 Jan 10 02:42 input.tar.gz
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user      6388 Jan 10 02:42 init_data.xml
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user         0 Jan 10 02:42 boinc_setup_complete
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user      8192 Jan 10 02:42 boinc_mmap_file
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user         0 Jan 10 02:42 boinc_lockfile
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user      2892 Jan 10 02:42 pandaJob.out
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user    989382 Jan 10 02:42 agis_schedconf.cvmfs.json
[2026-01-10 07:35:09] drwx------ 5 mf493845 unix-user       440 Jan 10 02:42 pilot3
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user 796355616 Jan 10 07:34 HITS.47962010._001575.pool.root.1
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user      1024 Jan 10 07:34 memory_monitor_summary.json
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user   1516240 Jan 10 07:34 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user   1561582 Jan 10 07:34 log.47962010._001575.job.log.tgz.1
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user      8565 Jan 10 07:34 heartbeat.json
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user        95 Jan 10 07:35 pilot_heartbeat.json
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user      4835 Jan 10 07:35 pilotlog.txt
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user   2512969 Jan 10 07:35 log.47962010._001575.job.log.1
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user       353 Jan 10 07:35 output.list
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user       620 Jan 10 07:35 runtime_log
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user   4096000 Jan 10 07:35 result.tar.gz
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user      9221 Jan 10 07:35 runtime_log.err
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user       650 Jan 10 07:35 KJcKDmRvLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLcmKDmJDy8Fo.diag
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user     21714 Jan 10 07:35 stderr.txt
[2026-01-10 07:35:09] HITS file was successfully produced:
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user 796355616 Jan 10 07:34 shared/HITS.pool.root.1
[2026-01-10 07:35:09]  *** Contents of shared directory: ***
[2026-01-10 07:35:09] total 1167532
[2026-01-10 07:35:09] -rw-r--r-- 2 mf493845 unix-user 394486946 Jan 10 02:42 ATLAS.root_0
[2026-01-10 07:35:09] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:42 start_atlas.sh
[2026-01-10 07:35:09] -rw-r--r-- 2 mf493845 unix-user    592614 Jan 10 02:42 input.tar.gz
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user 796355616 Jan 10 07:34 HITS.pool.root.1
[2026-01-10 07:35:09] -rw------- 1 mf493845 unix-user   4096000 Jan 10 07:35 result.tar.gz
07:35:11 (20688): run_atlas exited; CPU time 132276.884413
07:35:11 (20688): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN