Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:43:09 (18849): wrapper (7.7.26015): starting
06:43:09 (18849): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 06:43:09] Arguments: --nthreads 8
[2026-01-10 06:43:09] Threads: 8
[2026-01-10 06:43:09] Checking for CVMFS
[2026-01-10 06:43:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 06:43:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 06:43:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 06:43:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 06:43:13] 2.11.2.0 10583 36433 105040 154969 0 60 15885722 25165825 899 130560 0 17102033 99.793 10755641 3810 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 06:43:13] CVMFS is ok
[2026-01-10 06:43:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 06:43:13] Checking for apptainer binary...
[2026-01-10 06:43:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 06:43:13] Running /usr/bin/apptainer --version
[2026-01-10 06:43:13] apptainer version 1.3.2-1.el7
[2026-01-10 06:43:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 06:43:19] cg-vwn444.simple-grid.lan
[2026-01-10 06:43:19] apptainer works
[2026-01-10 06:43:19] Set ATHENA_PROC_NUMBER=8
[2026-01-10 06:43:19] Set ATHENA_CORE_NUMBER=8
[2026-01-10 06:43:19] Starting ATLAS job with PandaID=6963381846
[2026-01-10 06:43:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 09:26:52]  *** The last 200 lines of the pilot log: ***
[2026-01-11 09:26:52] 2026-01-11 08:26:04,017 | INFO     | monitor loop #6461: job 0:6963381846 is in state 'finished'
[2026-01-11 09:26:52] 2026-01-11 08:26:04,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 09:26:52] 2026-01-11 08:26:04,323 | INFO     | time since job start (95904s) is within the limit (349056.0s)
[2026-01-11 09:26:52] 2026-01-11 08:26:05,492 | INFO     | PID=22771 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 09:26:52] 2026-01-11 08:26:05,493 | INFO     | .. there are 2 such processes running
[2026-01-11 09:26:52] 2026-01-11 08:26:06,494 | INFO     | time since job start (95906s) is within the limit (349056.0s)
[2026-01-11 09:26:52] 2026-01-11 08:26:06,522 | INFO     | monitor loop #6462: job 0:6963381846 is in state 'finished'
[2026-01-11 09:26:52] 2026-01-11 08:26:06,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 09:26:52] 2026-01-11 08:26:08,501 | INFO     | time since job start (95908s) is within the limit (349056.0s)
[2026-01-11 09:26:52] 2026-01-11 08:26:09,027 | INFO     | monitor loop #6463: job 0:6963381846 is in state 'finished'
[2026-01-11 09:26:52] 2026-01-11 08:26:09,027 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 09:26:52] 2026-01-11 08:26:10,514 | INFO     | time since job start (95910s) is within the limit (349056.0s)
[2026-01-11 09:26:52] 2026-01-11 08:26:11,533 | INFO     | monitor loop #6464: job 0:6963381846 is in state 'finished'
[2026-01-11 09:26:52] 2026-01-11 08:26:11,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 09:26:52] 2026-01-11 08:26:12,527 | INFO     | time since job start (95912s) is within the limit (349056.0s)
[2026-01-11 09:26:52] 2026-01-11 08:26:13,796 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 09:26:52] 2026-01-11 08:26:13,798 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-11 09:26:52] 2026-01-11 08:26:13,799 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6963381846/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 09:26:52] 2026-01-11 08:26:13,800 | INFO     | extracted standard info from prmon json
[2026-01-11 09:26:52] 2026-01-11 08:26:13,800 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 09:26:52] 2026-01-11 08:26:13,800 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 09:26:52] 2026-01-11 08:26:13,819 | INFO     | fitting pss+swap vs Time
[2026-01-11 09:26:52] 2026-01-11 08:26:13,821 | INFO     | sum of square deviations: 1179471279069.5022
[2026-01-11 09:26:52] 2026-01-11 08:26:13,881 | INFO     | sum of deviations: 4596965982295.949
[2026-01-11 09:26:52] 2026-01-11 08:26:13,881 | INFO     | mean x: 1768072231.0819988
[2026-01-11 09:26:52] 2026-01-11 08:26:13,881 | INFO     | mean y: 2810338.8910954515
[2026-01-11 09:26:52] 2026-01-11 08:26:13,882 | INFO     | intersect: -6888216212.376975
[2026-01-11 09:26:52] 2026-01-11 08:26:13,883 | INFO     | chi2: 32.915968637132394
[2026-01-11 09:26:52] 2026-01-11 08:26:13,884 | INFO     | sum of square deviations: 1168174261453.6326
[2026-01-11 09:26:52] 2026-01-11 08:26:13,930 | INFO     | sum of deviations: 5110184071248.917
[2026-01-11 09:26:52] 2026-01-11 08:26:13,930 | INFO     | mean x: 1768072078.5854757
[2026-01-11 09:26:52] 2026-01-11 08:26:13,930 | INFO     | mean y: 2817266.2262210795
[2026-01-11 09:26:52] 2026-01-11 08:26:13,930 | INFO     | intersect: -7731622766.345997
[2026-01-11 09:26:52] 2026-01-11 08:26:13,932 | INFO     | chi2: 29.692350885616598
[2026-01-11 09:26:52] 2026-01-11 08:26:13,932 | INFO     | current chi2=29.692350885616598 (change=9.793476798611492 %)
[2026-01-11 09:26:52] 2026-01-11 08:26:13,932 | INFO     | right removable region: 1555
[2026-01-11 09:26:52] 2026-01-11 08:26:13,933 | INFO     | sum of square deviations: 1168173231163.6316
[2026-01-11 09:26:52] 2026-01-11 08:26:13,969 | INFO     | sum of deviations: 3935992988296.969
[2026-01-11 09:26:52] 2026-01-11 08:26:13,970 | INFO     | mean x: 1768072383.5854757
[2026-01-11 09:26:52] 2026-01-11 08:26:13,970 | INFO     | mean y: 2819260.6356041133
[2026-01-11 09:26:52] 2026-01-11 08:26:13,970 | INFO     | intersect: -5954448308.029599
[2026-01-11 09:26:52] 2026-01-11 08:26:13,971 | INFO     | chi2: 27.876636166656628
[2026-01-11 09:26:52] 2026-01-11 08:26:13,971 | INFO     | current chi2=27.876636166656628 (change=15.309689123931516 %)
[2026-01-11 09:26:52] 2026-01-11 08:26:13,971 | INFO     | left removable region: 10
[2026-01-11 09:26:52] 2026-01-11 08:26:13,973 | INFO     | sum of square deviations: 1143573189214.578
[2026-01-11 09:26:52] 2026-01-11 08:26:14,028 | INFO     | sum of deviations: 3951051576819.516
[2026-01-11 09:26:52] 2026-01-11 08:26:14,028 | INFO     | mean x: 1768072353.0932038
[2026-01-11 09:26:52] 2026-01-11 08:26:14,028 | INFO     | mean y: 2836106.010355987
[2026-01-11 09:26:52] 2026-01-11 08:26:14,028 | INFO     | intersect: -6105863472.2106085
[2026-01-11 09:26:52] 2026-01-11 08:26:14,030 | INFO     | chi2: 19.672442975158297
[2026-01-11 09:26:52] 2026-01-11 08:26:14,030 | INFO     | current memory leak: 3.46 B/s (using 1545 data points, chi2=19.67)
[2026-01-11 09:26:52] 2026-01-11 08:26:14,031 | INFO     | could have reported an average CPU frequency of 1999 MHz (52 samples)
[2026-01-11 09:26:52] 2026-01-11 08:26:14,031 | INFO     | ..............................
[2026-01-11 09:26:52] 2026-01-11 08:26:14,031 | INFO     | . Timing measurements:
[2026-01-11 09:26:52] 2026-01-11 08:26:14,031 | INFO     | . get job = 0 s
[2026-01-11 09:26:52] 2026-01-11 08:26:14,031 | INFO     | . initial setup = 13 s
[2026-01-11 09:26:52] 2026-01-11 08:26:14,031 | INFO     | . payload setup = 199 s
[2026-01-11 09:26:52] 2026-01-11 08:26:14,031 | INFO     | . stage-in = 0 s
[2026-01-11 09:26:52] 2026-01-11 08:26:14,032 | INFO     | . payload execution = 95367 s
[2026-01-11 09:26:52] 2026-01-11 08:26:14,032 | INFO     | . stage-out = 5 s
[2026-01-11 09:26:52] 2026-01-11 08:26:14,032 | INFO     | . log creation = 2 s
[2026-01-11 09:26:52] 2026-01-11 08:26:14,032 | INFO     | ..............................
[2026-01-11 09:26:52] 2026-01-11 08:26:14,120 | INFO     | 
[2026-01-11 09:26:52] 2026-01-11 08:26:14,120 | INFO     | job summary report
[2026-01-11 09:26:52] 2026-01-11 08:26:14,120 | INFO     | --------------------------------------------------
[2026-01-11 09:26:52] 2026-01-11 08:26:14,120 | INFO     | PanDA job id: 6963381846
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | task id: 47962010
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | errors: (none)
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | pilot state: finished 
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | transexitcode: 0
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | exeerrorcode: 0
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | exeerrordiag: 
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | exitcode: 0
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | exitmsg: OK
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | cpuconsumptiontime: 355729 s
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | nevents: 900
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | neventsw: 0
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | pid: 29366
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | pgrp: 29366
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | corecount: 8
[2026-01-11 09:26:52] 2026-01-11 08:26:14,121 | INFO     | event service: False
[2026-01-11 09:26:52] 2026-01-11 08:26:14,122 | INFO     | sizes: {0: 2284397, 1: 2284652, 2: 2284652, 12: 2284680, 23: 2284708, 34: 2284736, 44: 2284892, 55: 2284920, 66: 2284948, 77: 2284976, 87: 2285032, 98: 2285340, 10
[2026-01-11 09:26:52] 2026-01-11 08:26:14,122 | INFO     | --------------------------------------------------
[2026-01-11 09:26:52] 2026-01-11 08:26:14,122 | INFO     | 
[2026-01-11 09:26:52] 2026-01-11 08:26:14,122 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-11 09:26:52] 2026-01-11 08:26:14,536 | INFO     | time since job start (95914s) is within the limit (349056.0s)
[2026-01-11 09:26:52] 2026-01-11 08:26:14,811 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,811 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,811 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,811 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,811 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,811 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,811 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 09:26:52] 2026-01-11 08:26:14,812 | INFO     | job 6963381846 has completed (purged errors)
[2026-01-11 09:26:52] 2026-01-11 08:26:14,813 | INFO     | overall cleanup function is called
[2026-01-11 09:26:52] 2026-01-11 08:26:15,828 | INFO     | --- collectZombieJob: --- 10, [29366]
[2026-01-11 09:26:52] 2026-01-11 08:26:15,828 | INFO     | zombie collector waiting for pid 29366
[2026-01-11 09:26:52] 2026-01-11 08:26:15,828 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 09:26:52] 2026-01-11 08:26:15,828 | INFO     | collected zombie processes
[2026-01-11 09:26:52] 2026-01-11 08:26:15,828 | INFO     | will attempt to kill all subprocesses of pid=29366
[2026-01-11 09:26:52] 2026-01-11 08:26:15,898 | INFO     | process IDs to be killed: [29366] (in reverse order)
[2026-01-11 09:26:52] 2026-01-11 08:26:16,872 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 09:26:52] 2026-01-11 08:26:16,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 09:26:52] 2026-01-11 08:26:16,874 | INFO     | did not find any defunct processes belonging to 29366
[2026-01-11 09:26:52] 2026-01-11 08:26:16,876 | INFO     | did not find any defunct processes belonging to 29366
[2026-01-11 09:26:52] 2026-01-11 08:26:16,876 | INFO     | ready for new job
[2026-01-11 09:26:52] 2026-01-11 08:26:16,876 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 09:26:52] 2026-01-11 08:26:16,882 | INFO     | ***************************************
[2026-01-11 09:26:52] 2026-01-11 08:26:16,882 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 09:26:52] 2026-01-11 08:26:16,883 | INFO     | ***************************************
[2026-01-11 09:26:52] 2026-01-11 08:26:16,883 | INFO     | 
[2026-01-11 09:26:52] 2026-01-11 08:26:16,883 | INFO     | pilot is running in a VM
[2026-01-11 09:26:52] 2026-01-11 08:26:16,883 | INFO     | architecture information:
[2026-01-11 09:26:52] 2026-01-11 08:26:16,898 | INFO     | executing command: cat /etc/os-release
[2026-01-11 09:26:52] 2026-01-11 08:26:17,243 | INFO     | cat /etc/os-release:
[2026-01-11 09:26:52] NAME="CentOS Linux"
[2026-01-11 09:26:52] VERSION="7 (Core)"
[2026-01-11 09:26:52] ID="centos"
[2026-01-11 09:26:52] ID_LIKE="rhel fedora"
[2026-01-11 09:26:52] VERSION_ID="7"
[2026-01-11 09:26:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 09:26:52] ANSI_COLOR="0;31"
[2026-01-11 09:26:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 09:26:52] HOME_URL="https://www.centos.org/"
[2026-01-11 09:26:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 09:26:52] 
[2026-01-11 09:26:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 09:26:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 09:26:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 09:26:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 09:26:52] 
[2026-01-11 09:26:52] 2026-01-11 08:26:17,243 | INFO     | ***************************************
[2026-01-11 09:26:52] 2026-01-11 08:26:17,747 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-11 09:26:52] 2026-01-11 08:26:17,988 | INFO     | sufficient remaining disk space (495734226944 B)
[2026-01-11 09:26:52] 2026-01-11 08:26:17,989 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 09:26:52] 2026-01-11 08:26:17,989 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 09:26:52] 2026-01-11 08:26:17,989 | INFO     | update_server=False
[2026-01-11 09:26:52] 2026-01-11 08:26:17,989 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 09:26:52] 2026-01-11 08:26:17,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 09:26:52] 2026-01-11 08:26:17,990 | INFO     | aborting loop
[2026-01-11 09:26:52] 2026-01-11 08:26:17,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 09:26:52] 2026-01-11 08:26:18,187 | INFO     | all payload control threads have been joined
[2026-01-11 09:26:52] 2026-01-11 08:26:18,194 | INFO     | all data control threads have been joined
[2026-01-11 09:26:52] 2026-01-11 08:26:18,339 | INFO     | all job control threads have been joined
[2026-01-11 09:26:52] 2026-01-11 08:26:18,395 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 09:26:52] 2026-01-11 08:26:18,995 | INFO     | [job] retrieve thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:18,996 | INFO     | [job] job monitor thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:19,098 | INFO     | [payload] validate_post thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:19,138 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 09:26:52] 2026-01-11 08:26:19,148 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:19,193 | INFO     | [payload] control thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:19,200 | INFO     | [data] control thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:19,237 | INFO     | [job] validate thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:19,345 | INFO     | [job] control thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:19,607 | INFO     | [payload] failed_post thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:19,866 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:19,933 | INFO     | [data] copytool_in thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:20,144 | INFO     | [job] queue monitor thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:20,402 | INFO     | [data] copytool_out thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:20,479 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:22,000 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:27,792 | INFO     | [monitor] cgroup control has ended
[2026-01-11 09:26:52] 2026-01-11 08:26:28,688 | INFO     | job.realtimelogging is not enabled
[2026-01-11 09:26:52] 2026-01-11 08:26:29,694 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 09:26:52] 2026-01-11 08:26:30,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651652650816)>', '<ExcThread(monitor, started 140650775308032)>']
[2026-01-11 09:26:52] 2026-01-11 08:26:35,524 | INFO     | all workflow threads have been joined
[2026-01-11 09:26:52] 2026-01-11 08:26:35,524 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 09:26:52] 2026-01-11 08:26:35,524 | INFO     | traces error code: 0
[2026-01-11 09:26:52] 2026-01-11 08:26:35,524 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 09:26:52] 2026-01-11 08:26:47,647 | INFO     | PID=22771 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 09:26:52] 2026-01-11 08:26:47,648 | INFO     | .. there are 2 such processes running
[2026-01-11 09:26:52] 2026-01-11 08:26:47,649 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 09:26:52] 2026-01-11 08:26:47,649 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 09:26:52] 2026-01-11 08:26:47,649 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 09:26:52] 2026-01-11 08:26:47,649 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 09:26:52] 2026-01-11 08:26:47,649 | INFO     | [monitor] control thread has ended
[2026-01-11 09:26:52] 2026-01-11 08:26:48,071 [wrapper] ==== pilot stdout END ====
[2026-01-11 09:26:52] 2026-01-11 08:26:48,195 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 09:26:52] 2026-01-11 08:26:48,291 [wrapper] pilotpid: 22771
[2026-01-11 09:26:52] 2026-01-11 08:26:48,415 [wrapper] Pilot exit status: 0
[2026-01-11 09:26:52] 2026-01-11 08:26:48,888 [wrapper] pandaids: 6963381846
[2026-01-11 09:26:52] 2026-01-11 08:26:49,660 [wrapper] cleanup supervisor_pilot 14525 22772
[2026-01-11 09:26:52] 2026-01-11 08:26:49,771 [wrapper] Test setup, not cleaning
[2026-01-11 09:26:52] 2026-01-11 08:26:49,854 [wrapper] apfmon messages muted
[2026-01-11 09:26:52] 2026-01-11 08:26:49,934 [wrapper] ==== wrapper stdout END ====
[2026-01-11 09:26:52] 2026-01-11 08:26:49,999 [wrapper] ==== wrapper stderr END ====
[2026-01-11 09:26:52]  *** Error codes and diagnostics ***
[2026-01-11 09:26:52]     "exeErrorCode": 0,
[2026-01-11 09:26:52]     "exeErrorDiag": "",
[2026-01-11 09:26:52]     "pilotErrorCode": 0,
[2026-01-11 09:26:52]     "pilotErrorDiag": "",
[2026-01-11 09:26:52]  *** Listing of results directory ***
[2026-01-11 09:26:52] total 1182256
[2026-01-11 09:26:52] -rwx------. 1 boinc boinc     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc      5112 Jan  9 08:21 queuedata.json
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc       100 Jan 10 06:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 09:26:52] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 06:43 run_atlas
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc       105 Jan 10 06:43 job.xml
[2026-01-11 09:26:52] -rw-r--r--. 2 boinc boinc 392411395 Jan 10 06:43 EVNT.47962006._000125.pool.root.1
[2026-01-11 09:26:52] -rw-r--r--. 2 boinc boinc     15847 Jan 10 06:43 start_atlas.sh
[2026-01-11 09:26:52] drwxrwx--x. 2 boinc boinc        68 Jan 10 06:43 shared
[2026-01-11 09:26:52] -rw-r--r--. 2 boinc boinc    592622 Jan 10 06:43 input.tar.gz
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc      6390 Jan 10 06:43 init_data.xml
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc         0 Jan 10 06:43 boinc_lockfile
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc      2893 Jan 10 06:43 pandaJob.out
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc    989374 Jan 10 06:47 agis_schedconf.cvmfs.json
[2026-01-11 09:26:52] drwx------. 5 boinc boinc      4096 Jan 10 06:47 pilot3
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc       533 Jan 11 08:58 boinc_task_state.xml
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc 783429968 Jan 11 09:22 HITS.47962010._001794.pool.root.1
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc      1033 Jan 11 09:24 memory_monitor_summary.json
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc   1516240 Jan 11 09:24 agis_ddmendpoints.agis.ALL.json
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc   2593151 Jan 11 09:24 log.47962010._001794.job.log.tgz.1
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc      8623 Jan 11 09:26 heartbeat.json
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc      8192 Jan 11 09:26 boinc_mmap_file
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc        29 Jan 11 09:26 wrapper_checkpoint.txt
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc       820 Jan 11 09:26 pilotlog.txt
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc        95 Jan 11 09:26 pilot_heartbeat.json
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc  12847996 Jan 11 09:26 log.47962010._001794.job.log.1
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc       353 Jan 11 09:26 output.list
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc       620 Jan 11 09:26 runtime_log
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc  15462400 Jan 11 09:26 result.tar.gz
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc      8817 Jan 11 09:26 runtime_log.err
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc       662 Jan 11 09:26 O4ZKDmcvLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgRhKDm5Hof3m.diag
[2026-01-11 09:26:52] -rw-r--r--. 1 boinc boinc     21317 Jan 11 09:26 stderr.txt
[2026-01-11 09:26:52] HITS file was successfully produced:
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc 783429968 Jan 11 09:22 shared/HITS.pool.root.1
[2026-01-11 09:26:52]  *** Contents of shared directory: ***
[2026-01-11 09:26:52] total 1163984
[2026-01-11 09:26:52] -rw-r--r--. 2 boinc boinc 392411395 Jan 10 06:43 ATLAS.root_0
[2026-01-11 09:26:52] -rw-r--r--. 2 boinc boinc     15847 Jan 10 06:43 start_atlas.sh
[2026-01-11 09:26:52] -rw-r--r--. 2 boinc boinc    592622 Jan 10 06:43 input.tar.gz
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc 783429968 Jan 11 09:22 HITS.pool.root.1
[2026-01-11 09:26:52] -rw-------. 1 boinc boinc  15462400 Jan 11 09:26 result.tar.gz
09:26:54 (18849): run_atlas exited; CPU time 356162.719398
09:26:54 (18849): called boinc_finish(0)

</stderr_txt>
]]>

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