Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:04:49 (3221): wrapper (7.7.26015): starting
01:04:49 (3221): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 01:04:49] Arguments: --nthreads 8
[2026-01-10 01:04:49] Threads: 8
[2026-01-10 01:04:49] Checking for CVMFS
[2026-01-10 01:04:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 01:04:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 01:04:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 01:04:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 01:04:49] 2.11.0.0 8101 129728 98192 154961 1 8 3058235 4096000 70 130560 2 5773134 99.462 7321836 481 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 01:04:49] CVMFS is ok
[2026-01-10 01:04:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 01:04:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 01:04:49] Further information can be found at the LHC@home message board.
[2026-01-10 01:04:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 01:04:49] Checking for apptainer binary...
[2026-01-10 01:04:49] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 01:04:49] apptainer is not installed, using version from CVMFS
[2026-01-10 01:04:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 01:04:49] WARNING: Environment variable TMPDIR already has value [/tmp/job_11009959/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node232
[2026-01-10 01:04:49] apptainer works
[2026-01-10 01:04:50] Set ATHENA_PROC_NUMBER=8
[2026-01-10 01:04:50] Set ATHENA_CORE_NUMBER=8
[2026-01-10 01:04:50] Starting ATLAS job with PandaID=6963167612
[2026-01-10 01:04:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11009959/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 02:18:40]  *** The last 200 lines of the pilot log: ***
[2026-01-10 02:18:40]  lfn=log.47898826._035853.job.log.tgz.1
[2026-01-10 02:18:40]  mtime=0
[2026-01-10 02:18:40]  protocol_id=None
[2026-01-10 02:18:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 02:18:40]  replicas=None
[2026-01-10 02:18:40]  scope=mc23_13p6TeV
[2026-01-10 02:18:40]  status=None
[2026-01-10 02:18:40]  status_code=0
[2026-01-10 02:18:40]  storage_token=
[2026-01-10 02:18:40]  surl=/tmp/job_11009959/atlas/pilot/slots/0/PanDA_Pilot-6963167612/log.47898826._035853.job.log.tgz.1
[2026-01-10 02:18:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/e4/log.47898826._035853.job.log.tgz.1
[2026-01-10 02:18:40]  workdir=None
[2026-01-10 02:18:40] ]
[2026-01-10 02:18:40] 2026-01-10 01:18:03,394 | INFO     | transferring file log.47898826._035853.job.log.tgz.1 from /tmp/job_11009959/atlas/pilot/slots/0/PanDA_Pilot-6963167612/log.47898826._035853.job.log.tgz.1 to /tmp/j
[2026-01-10 02:18:40] 2026-01-10 01:18:03,394 | INFO     | executing command: /usr/bin/env mv /tmp/job_11009959/atlas/pilot/slots/0/PanDA_Pilot-6963167612/log.47898826._035853.job.log.tgz.1 /tmp/job_11009959/atlas/pilot/sl
[2026-01-10 02:18:40] 2026-01-10 01:18:03,402 | INFO     | adding to output.list: log.47898826._035853.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/e4/log.47898826._035853.job.log.tg
[2026-01-10 02:18:40] 2026-01-10 01:18:03,402 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 02:18:40] 2026-01-10 01:18:03,402 | INFO     | summary of transferred files:
[2026-01-10 02:18:40] 2026-01-10 01:18:03,402 | INFO     |  -- lfn=log.47898826._035853.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 02:18:40] 2026-01-10 01:18:03,402 | INFO     | stage-out finished correctly
[2026-01-10 02:18:40] 2026-01-10 01:18:04,928 | INFO     | time since job start (4360s) is within the limit (349056.0s)
[2026-01-10 02:18:40] 2026-01-10 01:18:05,176 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 02:18:40] 2026-01-10 01:18:05,224 | INFO     | job 6963167612 has state=finished
[2026-01-10 02:18:40] 2026-01-10 01:18:05,224 | INFO     | preparing for final server update for job 6963167612 in state='finished'
[2026-01-10 02:18:40] 2026-01-10 01:18:05,224 | INFO     | this job has now completed (state=finished)
[2026-01-10 02:18:40] 2026-01-10 01:18:05,224 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 02:18:40] 2026-01-10 01:18:05,224 | INFO     | log transfer has been attempted: DONE
[2026-01-10 02:18:40] 2026-01-10 01:18:05,224 | INFO     | job 6963167612 has finished - writing final server update
[2026-01-10 02:18:40] 2026-01-10 01:18:05,225 | INFO     | total number of processed events: 400 (read)
[2026-01-10 02:18:40] 2026-01-10 01:18:05,225 | INFO     | executing command: lscpu
[2026-01-10 02:18:40] 2026-01-10 01:18:05,256 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 02:18:40] 2026-01-10 01:18:06,933 | INFO     | time since job start (4362s) is within the limit (349056.0s)
[2026-01-10 02:18:40] 2026-01-10 01:18:07,494 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 02:18:40] 2026-01-10 01:18:07,498 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2427.1380625
[2026-01-10 02:18:40] 2026-01-10 01:18:07,504 | INFO     | using path: /tmp/job_11009959/atlas/pilot/slots/0/PanDA_Pilot-6963167612/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 02:18:40] 2026-01-10 01:18:07,504 | INFO     | extracted standard info from prmon json
[2026-01-10 02:18:40] 2026-01-10 01:18:07,504 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 02:18:40] 2026-01-10 01:18:07,504 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 02:18:40] 2026-01-10 01:18:07,504 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 02:18:40] 2026-01-10 01:18:07,504 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 02:18:40] 2026-01-10 01:18:07,505 | INFO     | fitting pss+swap vs Time
[2026-01-10 02:18:40] 2026-01-10 01:18:07,505 | INFO     | sum of square deviations: 81266640.0
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | sum of deviations: 10200450439.0
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | mean x: 1768005814.5
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | mean y: 2456933.65625
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | intersect: -221914625976.02325
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | chi2: 0.8483944618095715
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | current memory leak: 125.52 B/s (using 64 data points, chi2=0.85)
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | could have reported an average CPU frequency of 2569 MHz (6 samples)
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | ..............................
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | . Timing measurements:
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | . get job = 0 s
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | . initial setup = 4 s
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | . payload setup = 46 s
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | . stage-in = 0 s
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | . payload execution = 4294 s
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | . stage-out = 0 s
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | . log creation = 0 s
[2026-01-10 02:18:40] 2026-01-10 01:18:07,506 | INFO     | ..............................
[2026-01-10 02:18:40] 2026-01-10 01:18:07,555 | INFO     | 
[2026-01-10 02:18:40] 2026-01-10 01:18:07,555 | INFO     | job summary report
[2026-01-10 02:18:40] 2026-01-10 01:18:07,555 | INFO     | --------------------------------------------------
[2026-01-10 02:18:40] 2026-01-10 01:18:07,555 | INFO     | PanDA job id: 6963167612
[2026-01-10 02:18:40] 2026-01-10 01:18:07,555 | INFO     | task id: 47898826
[2026-01-10 02:18:40] 2026-01-10 01:18:07,555 | INFO     | errors: (none)
[2026-01-10 02:18:40] 2026-01-10 01:18:07,555 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 02:18:40] 2026-01-10 01:18:07,555 | INFO     | pilot state: finished 
[2026-01-10 02:18:40] 2026-01-10 01:18:07,555 | INFO     | transexitcode: 0
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | exeerrorcode: 0
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | exeerrordiag: 
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | exitcode: 0
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | exitmsg: OK
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | cpuconsumptiontime: 28379 s
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | nevents: 400
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | neventsw: 0
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | pid: 792
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | pgrp: 792
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | corecount: 8
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | event service: False
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | sizes: {0: 2283143, 1: 2284125, 3: 2284387, 12: 2284415, 4344: 2310510, 4345: 2319721, 4347: 2319721, 4349: 2319915}
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | --------------------------------------------------
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | 
[2026-01-10 02:18:40] 2026-01-10 01:18:07,556 | INFO     | executing command: ls -lF /tmp/job_11009959/atlas/pilot/slots/0
[2026-01-10 02:18:40] 2026-01-10 01:18:07,565 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | job 6963167612 has completed (purged errors)
[2026-01-10 02:18:40] 2026-01-10 01:18:07,566 | INFO     | overall cleanup function is called
[2026-01-10 02:18:40] 2026-01-10 01:18:08,572 | INFO     | --- collectZombieJob: --- 10, [792]
[2026-01-10 02:18:40] 2026-01-10 01:18:08,572 | INFO     | zombie collector waiting for pid 792
[2026-01-10 02:18:40] 2026-01-10 01:18:08,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 02:18:40] 2026-01-10 01:18:08,573 | INFO     | collected zombie processes
[2026-01-10 02:18:40] 2026-01-10 01:18:08,573 | INFO     | will attempt to kill all subprocesses of pid=792
[2026-01-10 02:18:40] 2026-01-10 01:18:08,669 | INFO     | process IDs to be killed: [792] (in reverse order)
[2026-01-10 02:18:40] 2026-01-10 01:18:08,702 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 02:18:40] 2026-01-10 01:18:08,703 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 02:18:40] 2026-01-10 01:18:08,706 | INFO     | did not find any defunct processes belonging to 792
[2026-01-10 02:18:40] 2026-01-10 01:18:08,709 | INFO     | did not find any defunct processes belonging to 792
[2026-01-10 02:18:40] 2026-01-10 01:18:08,709 | INFO     | ready for new job
[2026-01-10 02:18:40] 2026-01-10 01:18:08,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 02:18:40] 2026-01-10 01:18:08,710 | INFO     | ***************************************
[2026-01-10 02:18:40] 2026-01-10 01:18:08,710 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 02:18:40] 2026-01-10 01:18:08,710 | INFO     | ***************************************
[2026-01-10 02:18:40] 2026-01-10 01:18:08,710 | INFO     | 
[2026-01-10 02:18:40] 2026-01-10 01:18:08,723 | INFO     | architecture information:
[2026-01-10 02:18:40] 2026-01-10 01:18:08,723 | INFO     | executing command: cat /etc/os-release
[2026-01-10 02:18:40] 2026-01-10 01:18:08,729 | INFO     | cat /etc/os-release:
[2026-01-10 02:18:40] NAME="CentOS Linux"
[2026-01-10 02:18:40] VERSION="7 (Core)"
[2026-01-10 02:18:40] ID="centos"
[2026-01-10 02:18:40] ID_LIKE="rhel fedora"
[2026-01-10 02:18:40] VERSION_ID="7"
[2026-01-10 02:18:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 02:18:40] ANSI_COLOR="0;31"
[2026-01-10 02:18:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 02:18:40] HOME_URL="https://www.centos.org/"
[2026-01-10 02:18:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 02:18:40] 
[2026-01-10 02:18:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 02:18:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 02:18:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 02:18:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 02:18:40] 
[2026-01-10 02:18:40] 2026-01-10 01:18:08,729 | INFO     | ***************************************
[2026-01-10 02:18:40] 2026-01-10 01:18:09,232 | INFO     | executing command: df -mP /tmp/job_11009959/atlas/pilot/slots/0
[2026-01-10 02:18:40] 2026-01-10 01:18:09,238 | INFO     | sufficient remaining disk space (225726955520 B)
[2026-01-10 02:18:40] 2026-01-10 01:18:09,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 02:18:40] 2026-01-10 01:18:09,238 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 02:18:40] 2026-01-10 01:18:09,238 | INFO     | update_server=False
[2026-01-10 02:18:40] 2026-01-10 01:18:09,238 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 02:18:40] 2026-01-10 01:18:09,238 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:18:40] 2026-01-10 01:18:09,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 02:18:40] 2026-01-10 01:18:09,622 | INFO     | all job control threads have been joined
[2026-01-10 02:18:40] 2026-01-10 01:18:09,764 | WARNING  | process 792 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 02:18:40] 2026-01-10 01:18:09,838 | INFO     | using path: /tmp/job_11009959/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 02:18:40] 2026-01-10 01:18:09,927 | INFO     | number of running child processes to parent process 792: 1
[2026-01-10 02:18:40] 2026-01-10 01:18:09,927 | INFO     | maximum number of monitored processes: 7
[2026-01-10 02:18:40] 2026-01-10 01:18:09,927 | INFO     | aborting job monitoring since job object (job id=6963167612) has expired
[2026-01-10 02:18:40] 2026-01-10 01:18:09,927 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:18:40] 2026-01-10 01:18:09,927 | INFO     | will abort loop
[2026-01-10 02:18:40] 2026-01-10 01:18:10,244 | INFO     | [job] retrieve thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:10,244 | INFO     | [job] queue monitor thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:10,256 | INFO     | all data control threads have been joined
[2026-01-10 02:18:40] 2026-01-10 01:18:10,435 | INFO     | [payload] validate_post thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:10,627 | INFO     | [job] control thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:10,714 | INFO     | all payload control threads have been joined
[2026-01-10 02:18:40] 2026-01-10 01:18:10,775 | INFO     | [data] copytool_in thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:10,831 | INFO     | [job] validate thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:10,932 | INFO     | [job] job monitor thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:11,103 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:11,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 02:18:40] 2026-01-10 01:18:11,244 | INFO     | [data] copytool_out thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:11,261 | INFO     | [data] control thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:11,264 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:11,491 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:11,502 | INFO     | [payload] failed_post thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:11,719 | INFO     | [payload] control thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:15,235 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:20,283 | INFO     | job.realtimelogging is not enabled
[2026-01-10 02:18:40] 2026-01-10 01:18:21,288 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 02:18:40] 2026-01-10 01:18:31,308 | INFO     | [monitor] cgroup control has ended
[2026-01-10 02:18:40] 2026-01-10 01:18:31,836 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456056616704)>']
[2026-01-10 02:18:40] 2026-01-10 01:18:36,861 | INFO     | all workflow threads have been joined
[2026-01-10 02:18:40] 2026-01-10 01:18:36,861 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 02:18:40] 2026-01-10 01:18:36,861 | INFO     | traces error code: 0
[2026-01-10 02:18:40] 2026-01-10 01:18:36,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 02:18:40] 2026-01-10 01:18:40,114 | INFO     | PID=12489 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 02:18:40] 2026-01-10 01:18:40,114 | INFO     | .. there are 2 such processes running
[2026-01-10 02:18:40] 2026-01-10 01:18:40,115 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 02:18:40] 2026-01-10 01:18:40,115 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 02:18:40] 2026-01-10 01:18:40,115 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 02:18:40] 2026-01-10 01:18:40,115 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 02:18:40] 2026-01-10 01:18:40,115 | INFO     | [monitor] control thread has ended
[2026-01-10 02:18:40] 2026-01-10 01:18:40,166 [wrapper] ==== pilot stdout END ====
[2026-01-10 02:18:40] 2026-01-10 01:18:40,167 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 02:18:40] 2026-01-10 01:18:40,168 [wrapper] pilotpid: 12489
[2026-01-10 02:18:40] 2026-01-10 01:18:40,169 [wrapper] Pilot exit status: 0
[2026-01-10 02:18:40] 2026-01-10 01:18:40,173 [wrapper] pandaids: 6963167612
[2026-01-10 02:18:40] 2026-01-10 01:18:40,196 [wrapper] cleanup supervisor_pilot 17588 12491
[2026-01-10 02:18:40] 2026-01-10 01:18:40,197 [wrapper] Test setup, not cleaning
[2026-01-10 02:18:40] 2026-01-10 01:18:40,198 [wrapper] apfmon messages muted
[2026-01-10 02:18:40] 2026-01-10 01:18:40,200 [wrapper] ==== wrapper stdout END ====
[2026-01-10 02:18:40] 2026-01-10 01:18:40,201 [wrapper] ==== wrapper stderr END ====
[2026-01-10 02:18:40]  *** Error codes and diagnostics ***
[2026-01-10 02:18:40]     "exeErrorCode": 0,
[2026-01-10 02:18:40]     "exeErrorDiag": "",
[2026-01-10 02:18:40]     "pilotErrorCode": 0,
[2026-01-10 02:18:40]     "pilotErrorDiag": "",
[2026-01-10 02:18:40]  *** Listing of results directory ***
[2026-01-10 02:18:40] total 434028
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 02:18:40] -rwx------ 1 mf493845 unix-user     36322 Jan  9 01:59 runpilot2-wrapper.sh
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user      5112 Jan  9 02:03 queuedata.json
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user       100 Jan 10 00:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 02:18:40] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 00:07 run_atlas
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user       105 Jan 10 00:07 job.xml
[2026-01-10 02:18:40] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 01:04 start_atlas.sh
[2026-01-10 02:18:40] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 01:04 shared
[2026-01-10 02:18:40] -rw-r--r-- 2 mf493845 unix-user    592404 Jan 10 01:04 input.tar.gz
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user      6390 Jan 10 01:04 init_data.xml
[2026-01-10 02:18:40] -rw-r--r-- 2 mf493845 unix-user 224489145 Jan 10 01:04 EVNT.47898824._001333.pool.root.1
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user         0 Jan 10 01:04 boinc_setup_complete
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user      8192 Jan 10 01:04 boinc_mmap_file
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user         0 Jan 10 01:04 boinc_lockfile
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user      2520 Jan 10 01:04 pandaJob.out
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user    989374 Jan 10 01:05 agis_schedconf.cvmfs.json
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user   1516240 Jan 10 01:05 agis_ddmendpoints.agis.ALL.json
[2026-01-10 02:18:40] drwx------ 5 mf493845 unix-user       440 Jan 10 01:05 pilot3
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user 214129117 Jan 10 02:17 HITS.47898826._035853.pool.root.1
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user      1019 Jan 10 02:17 memory_monitor_summary.json
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user    311040 Jan 10 02:18 log.47898826._035853.job.log.tgz.1
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user      7778 Jan 10 02:18 heartbeat.json
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user       820 Jan 10 02:18 pilotlog.txt
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user        95 Jan 10 02:18 pilot_heartbeat.json
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user    662577 Jan 10 02:18 log.47898826._035853.job.log.1
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user       357 Jan 10 02:18 output.list
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user       620 Jan 10 02:18 runtime_log
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user    993280 Jan 10 02:18 result.tar.gz
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user      9220 Jan 10 02:18 runtime_log.err
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user       643 Jan 10 02:18 cpKNDmY1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmImgKDmHMO6lm.diag
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user     22123 Jan 10 02:18 stderr.txt
[2026-01-10 02:18:40] HITS file was successfully produced:
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user 214129117 Jan 10 02:17 shared/HITS.pool.root.1
[2026-01-10 02:18:40]  *** Contents of shared directory: ***
[2026-01-10 02:18:40] total 429908
[2026-01-10 02:18:40] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 01:04 start_atlas.sh
[2026-01-10 02:18:40] -rw-r--r-- 2 mf493845 unix-user    592404 Jan 10 01:04 input.tar.gz
[2026-01-10 02:18:40] -rw-r--r-- 2 mf493845 unix-user 224489145 Jan 10 01:04 ATLAS.root_0
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user 214129117 Jan 10 02:17 HITS.pool.root.1
[2026-01-10 02:18:40] -rw------- 1 mf493845 unix-user    993280 Jan 10 02:18 result.tar.gz
02:18:41 (3221): run_atlas exited; CPU time 28436.962197
02:18:41 (3221): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN