Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:14:48 (878367): wrapper (7.7.26015): starting
19:14:48 (878367): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 19:14:48] Arguments: --nthreads 8
[2026-01-09 19:14:48] Threads: 8
[2026-01-09 19:14:48] Checking for CVMFS
[2026-01-09 19:14:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:14:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:14:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:14:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:14:50] 2.13.3.0 11836 92637 382136 154961 0 116 31667627 32935937 25929 16776704 0 348523416 99.488 450756384 34368 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 19:14:50] CVMFS is ok
[2026-01-09 19:14:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:14:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:14:50] Further information can be found at the LHC@home message board.
[2026-01-09 19:14:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:14:50] Checking for apptainer binary...
[2026-01-09 19:14:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:14:50] Running /usr/bin/apptainer --version
[2026-01-09 19:14:50] apptainer version 1.4.5-2.el9
[2026-01-09 19:14:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:14:51] c6-2-11-1.aglt2.org
[2026-01-09 19:14:51] apptainer works
[2026-01-09 19:14:51] Set ATHENA_PROC_NUMBER=8
[2026-01-09 19:14:51] Set ATHENA_CORE_NUMBER=8
[2026-01-09 19:14:51] Starting ATLAS job with PandaID=6963186719
[2026-01-09 19:14:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:18:25]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:18:25] 2026-01-10 04:17:19,056 | INFO     | time since job start (14486s) is within the limit (349056.0s)
[2026-01-09 23:18:25] 2026-01-10 04:17:19,533 | INFO     | monitor loop #938: job 0:6963186719 is in state 'finished'
[2026-01-09 23:18:25] 2026-01-10 04:17:19,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:18:25] 2026-01-10 04:17:21,063 | INFO     | time since job start (14488s) is within the limit (349056.0s)
[2026-01-09 23:18:25] 2026-01-10 04:17:22,038 | INFO     | monitor loop #939: job 0:6963186719 is in state 'finished'
[2026-01-09 23:18:25] 2026-01-10 04:17:22,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:18:25] 2026-01-10 04:17:23,070 | INFO     | time since job start (14490s) is within the limit (349056.0s)
[2026-01-09 23:18:25] 2026-01-10 04:17:24,115 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 23:18:25] 2026-01-10 04:17:24,149 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2730.2986979166667
[2026-01-09 23:18:25] 2026-01-10 04:17:24,213 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963186719/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:18:25] 2026-01-10 04:17:24,214 | INFO     | extracted standard info from prmon json
[2026-01-09 23:18:25] 2026-01-10 04:17:24,214 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:18:25] 2026-01-10 04:17:24,214 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:18:25] 2026-01-10 04:17:24,218 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:18:25] 2026-01-10 04:17:24,218 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:18:25] 2026-01-10 04:17:24,236 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:18:25] 2026-01-10 04:17:24,236 | INFO     | sum of square deviations: 4023724102.195742
[2026-01-09 23:18:25] 2026-01-10 04:17:24,238 | INFO     | sum of deviations: -67014284555.11489
[2026-01-09 23:18:25] 2026-01-10 04:17:24,238 | INFO     | mean x: 1768011418.7957447
[2026-01-09 23:18:25] 2026-01-10 04:17:24,238 | INFO     | mean y: 2557367.685106383
[2026-01-09 23:18:25] 2026-01-10 04:17:24,238 | INFO     | intersect: 29448418293.193127
[2026-01-09 23:18:25] 2026-01-10 04:17:24,238 | INFO     | chi2: 2.98884108720865
[2026-01-09 23:18:25] 2026-01-10 04:17:24,239 | INFO     | sum of square deviations: 3772315558.695646
[2026-01-09 23:18:25] 2026-01-10 04:17:24,253 | INFO     | sum of deviations: -50150883723.65213
[2026-01-09 23:18:25] 2026-01-10 04:17:24,253 | INFO     | mean x: 1768011266.3043478
[2026-01-09 23:18:25] 2026-01-10 04:17:24,253 | INFO     | mean y: 2567441.952173913
[2026-01-09 23:18:25] 2026-01-10 04:17:24,253 | INFO     | intersect: 23507315668.58113
[2026-01-09 23:18:25] 2026-01-10 04:17:24,253 | INFO     | chi2: 2.3045049423484736
[2026-01-09 23:18:25] 2026-01-10 04:17:24,253 | INFO     | current chi2=2.3045049423484736 (change=22.89637103119772 %)
[2026-01-09 23:18:25] 2026-01-10 04:17:24,254 | INFO     | right removable region: 229
[2026-01-09 23:18:25] 2026-01-10 04:17:24,266 | INFO     | sum of square deviations: 3772229791.4608574
[2026-01-09 23:18:25] 2026-01-10 04:17:24,267 | INFO     | sum of deviations: -110645045565.15657
[2026-01-09 23:18:25] 2026-01-10 04:17:24,268 | INFO     | mean x: 1768011571.3130436
[2026-01-09 23:18:25] 2026-01-10 04:17:24,268 | INFO     | mean y: 2583620.752173913
[2026-01-09 23:18:25] 2026-01-10 04:17:24,268 | INFO     | intersect: 51860962267.37701
[2026-01-09 23:18:25] 2026-01-10 04:17:24,268 | INFO     | chi2: 1.186751778837677
[2026-01-09 23:18:25] 2026-01-10 04:17:24,268 | INFO     | current chi2=1.186751778837677 (change=60.293915125945595 %)
[2026-01-09 23:18:25] 2026-01-10 04:17:24,269 | INFO     | sum of square deviations: 3531461416.888891
[2026-01-09 23:18:25] 2026-01-10 04:17:24,282 | INFO     | sum of deviations: -113244723116.79999
[2026-01-09 23:18:25] 2026-01-10 04:17:24,282 | INFO     | mean x: 1768011723.8222222
[2026-01-09 23:18:25] 2026-01-10 04:17:24,282 | INFO     | mean y: 2585252.28
[2026-01-09 23:18:25] 2026-01-10 04:17:24,282 | INFO     | intersect: 56698093002.691635
[2026-01-09 23:18:25] 2026-01-10 04:17:24,283 | INFO     | chi2: 1.1367608658050843
[2026-01-09 23:18:25] 2026-01-10 04:17:24,283 | INFO     | current chi2=1.1367608658050843 (change=4.212415260211743 %)
[2026-01-09 23:18:25] 2026-01-10 04:17:24,283 | INFO     | left removable region: 20
[2026-01-09 23:18:25] 2026-01-10 04:17:24,283 | INFO     | sum of square deviations: 2830312039.799059
[2026-01-09 23:18:25] 2026-01-10 04:17:24,285 | INFO     | sum of deviations: -77458496378.49284
[2026-01-09 23:18:25] 2026-01-10 04:17:24,285 | INFO     | mean x: 1768011845.8277512
[2026-01-09 23:18:25] 2026-01-10 04:17:24,285 | INFO     | mean y: 2583776.2918660287
[2026-01-09 23:18:25] 2026-01-10 04:17:24,285 | INFO     | intersect: 48388605257.83283
[2026-01-09 23:18:25] 2026-01-10 04:17:24,285 | INFO     | chi2: 0.41001833751152883
[2026-01-09 23:18:25] 2026-01-10 04:17:24,286 | INFO     | current memory leak: -27.37 B/s (using 209 data points, chi2=0.41)
[2026-01-09 23:18:25] 2026-01-10 04:17:24,296 | INFO     | could have reported an average CPU frequency of 2708 MHz (11 samples)
[2026-01-09 23:18:25] 2026-01-10 04:17:24,297 | INFO     | ..............................
[2026-01-09 23:18:25] 2026-01-10 04:17:24,297 | INFO     | . Timing measurements:
[2026-01-09 23:18:25] 2026-01-10 04:17:24,297 | INFO     | . get job = 0 s
[2026-01-09 23:18:25] 2026-01-10 04:17:24,297 | INFO     | . initial setup = 6 s
[2026-01-09 23:18:25] 2026-01-10 04:17:24,297 | INFO     | . payload setup = 41 s
[2026-01-09 23:18:25] 2026-01-10 04:17:24,297 | INFO     | . stage-in = 0 s
[2026-01-09 23:18:25] 2026-01-10 04:17:24,297 | INFO     | . payload execution = 14343 s
[2026-01-09 23:18:25] 2026-01-10 04:17:24,297 | INFO     | . stage-out = 5 s
[2026-01-09 23:18:25] 2026-01-10 04:17:24,297 | INFO     | . log creation = 0 s
[2026-01-09 23:18:25] 2026-01-10 04:17:24,297 | INFO     | ..............................
[2026-01-09 23:18:25] 2026-01-10 04:17:24,918 | INFO     | 
[2026-01-09 23:18:25] 2026-01-10 04:17:24,918 | INFO     | job summary report
[2026-01-09 23:18:25] 2026-01-10 04:17:24,925 | INFO     | --------------------------------------------------
[2026-01-09 23:18:25] 2026-01-10 04:17:24,925 | INFO     | PanDA job id: 6963186719
[2026-01-09 23:18:25] 2026-01-10 04:17:24,925 | INFO     | task id: 47898826
[2026-01-09 23:18:25] 2026-01-10 04:17:24,925 | INFO     | errors: (none)
[2026-01-09 23:18:25] 2026-01-10 04:17:24,925 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:18:25] 2026-01-10 04:17:24,925 | INFO     | pilot state: finished 
[2026-01-09 23:18:25] 2026-01-10 04:17:24,925 | INFO     | transexitcode: 0
[2026-01-09 23:18:25] 2026-01-10 04:17:24,925 | INFO     | exeerrorcode: 0
[2026-01-09 23:18:25] 2026-01-10 04:17:24,925 | INFO     | exeerrordiag: 
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | exitcode: 0
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | exitmsg: OK
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | cpuconsumptiontime: 60449 s
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | nevents: 400
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | neventsw: 0
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | pid: 894708
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | pgrp: 894708
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | corecount: 8
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | event service: False
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | sizes: {0: 2283744, 1: 2283999, 2: 2283999, 12: 2284027, 23: 2284055, 26: 2284345, 34: 2284501, 14389: 2315369, 14390: 2315368, 14396: 2324422, 14399: 2324478, 144
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | --------------------------------------------------
[2026-01-09 23:18:25] 2026-01-10 04:17:24,926 | INFO     | 
[2026-01-09 23:18:25] 2026-01-10 04:17:24,927 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 23:18:25] 2026-01-10 04:17:25,001 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,002 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,003 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:18:25] 2026-01-10 04:17:25,003 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,003 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:18:25] 2026-01-10 04:17:25,003 | INFO     | job 6963186719 has completed (purged errors)
[2026-01-09 23:18:25] 2026-01-10 04:17:25,003 | INFO     | overall cleanup function is called
[2026-01-09 23:18:25] 2026-01-10 04:17:26,016 | INFO     | --- collectZombieJob: --- 10, [894708]
[2026-01-09 23:18:25] 2026-01-10 04:17:26,016 | INFO     | zombie collector waiting for pid 894708
[2026-01-09 23:18:25] 2026-01-10 04:17:26,016 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:18:25] 2026-01-10 04:17:26,016 | INFO     | collected zombie processes
[2026-01-09 23:18:25] 2026-01-10 04:17:26,016 | INFO     | will attempt to kill all subprocesses of pid=894708
[2026-01-09 23:18:25] 2026-01-10 04:17:28,071 | INFO     | process IDs to be killed: [894708] (in reverse order)
[2026-01-09 23:18:25] 2026-01-10 04:17:28,351 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:18:25] 2026-01-10 04:17:28,352 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:18:25] 2026-01-10 04:17:28,460 | INFO     | did not find any defunct processes belonging to 894708
[2026-01-09 23:18:25] 2026-01-10 04:17:28,644 | INFO     | did not find any defunct processes belonging to 894708
[2026-01-09 23:18:25] 2026-01-10 04:17:28,645 | INFO     | ready for new job
[2026-01-09 23:18:25] 2026-01-10 04:17:28,645 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:18:25] 2026-01-10 04:17:28,647 | INFO     | ***************************************
[2026-01-09 23:18:25] 2026-01-10 04:17:28,647 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:18:25] 2026-01-10 04:17:28,647 | INFO     | ***************************************
[2026-01-09 23:18:25] 2026-01-10 04:17:28,647 | INFO     | 
[2026-01-09 23:18:25] 2026-01-10 04:17:28,714 | INFO     | architecture information:
[2026-01-09 23:18:25] 2026-01-10 04:17:28,729 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:18:25] 2026-01-10 04:17:28,869 | INFO     | cat /etc/os-release:
[2026-01-09 23:18:25] NAME="CentOS Linux"
[2026-01-09 23:18:25] VERSION="7 (Core)"
[2026-01-09 23:18:25] ID="centos"
[2026-01-09 23:18:25] ID_LIKE="rhel fedora"
[2026-01-09 23:18:25] VERSION_ID="7"
[2026-01-09 23:18:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:18:25] ANSI_COLOR="0;31"
[2026-01-09 23:18:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:18:25] HOME_URL="https://www.centos.org/"
[2026-01-09 23:18:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:18:25] 
[2026-01-09 23:18:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:18:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:18:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:18:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:18:25] 
[2026-01-09 23:18:25] 2026-01-10 04:17:28,870 | INFO     | ***************************************
[2026-01-09 23:18:25] 2026-01-10 04:17:29,373 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 23:18:25] 2026-01-10 04:17:29,507 | INFO     | sufficient remaining disk space (93310681088 B)
[2026-01-09 23:18:25] 2026-01-10 04:17:29,507 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:18:25] 2026-01-10 04:17:29,507 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:18:25] 2026-01-10 04:17:29,507 | INFO     | update_server=False
[2026-01-09 23:18:25] 2026-01-10 04:17:29,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:18:25] 2026-01-10 04:17:29,631 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 23:18:25] 2026-01-10 04:17:29,632 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 23:18:25] 2026-01-10 04:17:29,632 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:18:25] 2026-01-10 04:17:29,632 | INFO     | will abort loop
[2026-01-09 23:18:25] 2026-01-10 04:17:29,763 | INFO     | all data control threads have been joined
[2026-01-09 23:18:25] 2026-01-10 04:17:29,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:18:25] 2026-01-10 04:17:29,876 | INFO     | all payload control threads have been joined
[2026-01-09 23:18:25] 2026-01-10 04:17:30,140 | INFO     | all job control threads have been joined
[2026-01-09 23:18:25] 2026-01-10 04:17:30,458 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:18:25] 2026-01-10 04:17:30,513 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:30,638 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:30,684 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:30,769 | INFO     | [data] control thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:30,775 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:30,882 | INFO     | [payload] control thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:30,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:18:25] 2026-01-10 04:17:31,006 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:31,006 | INFO     | [job] validate thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:31,007 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:31,148 | INFO     | [job] control thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:31,450 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:31,454 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:31,454 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:31,791 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:32,946 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:34,467 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:18:25] 2026-01-10 04:17:58,598 | INFO     | PID=883148 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 23:18:25] 2026-01-10 04:17:58,598 | INFO     | .. there are 24 such processes running
[2026-01-09 23:18:25] 2026-01-10 04:17:58,599 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:18:25] 2026-01-10 04:17:58,599 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:18:25] 2026-01-10 04:17:58,600 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:18:25] 2026-01-10 04:18:18,464 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:18:25] 2026-01-10 04:18:18,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634386368320)>', '<ExcThread(monitor, started 139633681757952)>']
[2026-01-09 23:18:25] 2026-01-10 04:18:18,792 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:18:25] 2026-01-10 04:18:18,792 | INFO     | [monitor] control thread has ended
[2026-01-09 23:18:25] 2026-01-10 04:18:23,503 | INFO     | all workflow threads have been joined
[2026-01-09 23:18:25] 2026-01-10 04:18:23,503 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:18:25] 2026-01-10 04:18:23,503 | INFO     | traces error code: 0
[2026-01-09 23:18:25] 2026-01-10 04:18:23,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:18:25] 2026-01-10 04:18:24,024 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:18:25] 2026-01-10 04:18:24,063 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:18:25] 2026-01-10 04:18:24,073 [wrapper] pilotpid: 883148
[2026-01-09 23:18:25] 2026-01-10 04:18:24,085 [wrapper] Pilot exit status: 0
[2026-01-09 23:18:25] 2026-01-10 04:18:24,189 [wrapper] pandaids: 6963186719
[2026-01-09 23:18:25] 2026-01-10 04:18:24,897 [wrapper] cleanup supervisor_pilot 1536306 883149
[2026-01-09 23:18:25] 2026-01-10 04:18:24,909 [wrapper] Test setup, not cleaning
[2026-01-09 23:18:25] 2026-01-10 04:18:24,937 [wrapper] apfmon messages muted
[2026-01-09 23:18:25] 2026-01-10 04:18:24,956 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:18:25] 2026-01-10 04:18:24,979 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:18:25]  *** Error codes and diagnostics ***
[2026-01-09 23:18:25]     "exeErrorCode": 0,
[2026-01-09 23:18:25]     "exeErrorDiag": "",
[2026-01-09 23:18:25]     "pilotErrorCode": 0,
[2026-01-09 23:18:25]     "pilotErrorDiag": "",
[2026-01-09 23:18:25]  *** Listing of results directory ***
[2026-01-09 23:18:25] total 442840
[2026-01-09 23:18:25] -rwx------. 1 boincer umatlas     36322 Jan  8 20:01 runpilot2-wrapper.sh
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:06 queuedata.json
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas       100 Jan  9 19:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:18:25] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 19:14 run_atlas
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas       105 Jan  9 19:14 job.xml
[2026-01-09 23:18:25] -rw-r--r--. 2 boincer umatlas 223607282 Jan  9 19:14 EVNT.47898824._001406.pool.root.1
[2026-01-09 23:18:25] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:14 start_atlas.sh
[2026-01-09 23:18:25] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 19:14 shared
[2026-01-09 23:18:25] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 19:14 input.tar.gz
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas         0 Jan  9 19:14 boinc_lockfile
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 19:14 pandaJob.out
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas        57 Jan  9 19:14 setup.sh.local
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas    989374 Jan  9 19:15 agis_schedconf.cvmfs.json
[2026-01-09 23:18:25] drwx------. 5 boincer umatlas      4096 Jan  9 19:15 pilot3
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas      6877 Jan  9 23:13 init_data.xml
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas 221234844 Jan  9 23:15 HITS.47898826._036695.pool.root.1
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas       531 Jan  9 23:15 boinc_task_state.xml
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas      1043 Jan  9 23:16 memory_monitor_summary.json
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas   1516240 Jan  9 23:16 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas    471452 Jan  9 23:16 log.47898826._036695.job.log.tgz.1
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas        95 Jan  9 23:17 pilot_heartbeat.json
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas      7834 Jan  9 23:17 heartbeat.json
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:18 boinc_mmap_file
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas        28 Jan  9 23:18 wrapper_checkpoint.txt
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas      5009 Jan  9 23:18 pilotlog.txt
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas   1883518 Jan  9 23:18 log.47898826._036695.job.log.1
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas       357 Jan  9 23:18 output.list
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:18 runtime_log
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas   2375680 Jan  9 23:18 result.tar.gz
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas       657 Jan  9 23:18 ZXoMDmj3Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmb2lKDmJWhlSn.diag
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas      9348 Jan  9 23:18 runtime_log.err
[2026-01-09 23:18:25] -rw-r--r--. 1 boincer umatlas     21411 Jan  9 23:18 stderr.txt
[2026-01-09 23:18:25] HITS file was successfully produced:
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas 221234844 Jan  9 23:15 shared/HITS.pool.root.1
[2026-01-09 23:18:25]  *** Contents of shared directory: ***
[2026-01-09 23:18:25] total 437340
[2026-01-09 23:18:25] -rw-r--r--. 2 boincer umatlas 223607282 Jan  9 19:14 ATLAS.root_0
[2026-01-09 23:18:25] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 19:14 start_atlas.sh
[2026-01-09 23:18:25] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 19:14 input.tar.gz
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas 221234844 Jan  9 23:15 HITS.pool.root.1
[2026-01-09 23:18:25] -rw-------. 1 boincer umatlas   2375680 Jan  9 23:18 result.tar.gz
23:18:27 (878367): run_atlas exited; CPU time 61032.269646
23:18:27 (878367): called boinc_finish(0)

</stderr_txt>
]]>

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