Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:57:17 (2152874): wrapper (7.7.26015): starting
06:57:17 (2152874): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 06:57:17] Arguments: --nthreads 4
[2026-01-10 06:57:17] Threads: 4
[2026-01-10 06:57:17] Checking for CVMFS
[2026-01-10 06:57:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 06:57:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 06:57:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 06:57:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 06:57:17] 2.9.2.0 1163962 3384 96412 154969 2 57 20514849 36864001 0 130560 0 2604427 99.989 125501 6880 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 06:57:17] CVMFS is ok
[2026-01-10 06:57:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 06:57:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 06:57:17] Further information can be found at the LHC@home message board.
[2026-01-10 06:57:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 06:57:17] Checking for apptainer binary...
[2026-01-10 06:57:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 06:57:17] Running /usr/bin/apptainer --version
[2026-01-10 06:57:17] apptainer version 1.4.1-1.1
[2026-01-10 06:57:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 06:57:17] magicA244a
[2026-01-10 06:57:17] apptainer works
[2026-01-10 06:57:17] Set ATHENA_PROC_NUMBER=4
[2026-01-10 06:57:17] Set ATHENA_CORE_NUMBER=4
[2026-01-10 06:57:17] Starting ATLAS job with PandaID=6964048966
[2026-01-10 06:57:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 08:23:38]  *** The last 200 lines of the pilot log: ***
[2026-01-10 08:23:38] 2026-01-10 07:23:05,634 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 08:23:38] 2026-01-10 07:23:05,634 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 08:23:38] 2026-01-10 07:23:05,634 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 08:23:38] 2026-01-10 07:23:05,634 | INFO     | job 6964048966 has completed (purged errors)
[2026-01-10 08:23:38] 2026-01-10 07:23:05,634 | INFO     | overall cleanup function is called
[2026-01-10 08:23:38] 2026-01-10 07:23:06,641 | INFO     | --- collectZombieJob: --- 10, [2163208]
[2026-01-10 08:23:38] 2026-01-10 07:23:06,641 | INFO     | zombie collector waiting for pid 2163208
[2026-01-10 08:23:38] 2026-01-10 07:23:06,641 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 08:23:38] 2026-01-10 07:23:06,641 | INFO     | collected zombie processes
[2026-01-10 08:23:38] 2026-01-10 07:23:06,641 | INFO     | will attempt to kill all subprocesses of pid=2163208
[2026-01-10 08:23:38] 2026-01-10 07:23:06,685 | INFO     | process IDs to be killed: [2163208] (in reverse order)
[2026-01-10 08:23:38] 2026-01-10 07:23:06,712 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 08:23:38] 2026-01-10 07:23:06,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 08:23:38] 2026-01-10 07:23:06,713 | INFO     | did not find any defunct processes belonging to 2163208
[2026-01-10 08:23:38] 2026-01-10 07:23:06,714 | INFO     | did not find any defunct processes belonging to 2163208
[2026-01-10 08:23:38] 2026-01-10 07:23:06,714 | INFO     | ready for new job
[2026-01-10 08:23:38] 2026-01-10 07:23:06,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 08:23:38] 2026-01-10 07:23:06,715 | INFO     | ***************************************
[2026-01-10 08:23:38] 2026-01-10 07:23:06,715 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 08:23:38] 2026-01-10 07:23:06,715 | INFO     | ***************************************
[2026-01-10 08:23:38] 2026-01-10 07:23:06,715 | INFO     | 
[2026-01-10 08:23:38] 2026-01-10 07:23:06,716 | INFO     | architecture information:
[2026-01-10 08:23:38] 2026-01-10 07:23:06,716 | INFO     | executing command: cat /etc/os-release
[2026-01-10 08:23:38] 2026-01-10 07:23:06,725 | INFO     | cat /etc/os-release:
[2026-01-10 08:23:38] NAME="CentOS Linux"
[2026-01-10 08:23:38] VERSION="7 (Core)"
[2026-01-10 08:23:38] ID="centos"
[2026-01-10 08:23:38] ID_LIKE="rhel fedora"
[2026-01-10 08:23:38] VERSION_ID="7"
[2026-01-10 08:23:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 08:23:38] ANSI_COLOR="0;31"
[2026-01-10 08:23:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 08:23:38] HOME_URL="https://www.centos.org/"
[2026-01-10 08:23:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 08:23:38] 
[2026-01-10 08:23:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 08:23:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 08:23:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 08:23:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 08:23:38] 
[2026-01-10 08:23:38] 2026-01-10 07:23:06,725 | INFO     | ***************************************
[2026-01-10 08:23:38] 2026-01-10 07:23:07,228 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 08:23:38] 2026-01-10 07:23:07,241 | INFO     | sufficient remaining disk space (340397129728 B)
[2026-01-10 08:23:38] 2026-01-10 07:23:07,242 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 08:23:38] 2026-01-10 07:23:07,242 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 08:23:38] 2026-01-10 07:23:07,242 | INFO     | update_server=False
[2026-01-10 08:23:38] 2026-01-10 07:23:07,242 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 08:23:38] 2026-01-10 07:23:07,242 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 08:23:38] 2026-01-10 07:23:07,242 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 08:23:38] 2026-01-10 07:23:07,242 | INFO     | aborting loop
[2026-01-10 08:23:38] 2026-01-10 07:23:07,812 | INFO     | all data control threads have been joined
[2026-01-10 08:23:38] 2026-01-10 07:23:07,949 | INFO     | all job control threads have been joined
[2026-01-10 08:23:38] 2026-01-10 07:23:08,248 | INFO     | [job] retrieve thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:08,248 | INFO     | [job] queue monitor thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:08,248 | INFO     | [job] job monitor thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:08,413 | INFO     | [payload] validate_post thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:08,556 | INFO     | [payload] failed_post thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:08,619 | INFO     | all payload control threads have been joined
[2026-01-10 08:23:38] 2026-01-10 07:23:08,628 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 08:23:38] 2026-01-10 07:23:08,817 | INFO     | [data] control thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:08,955 | INFO     | [job] control thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:09,286 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:09,425 | INFO     | [data] copytool_in thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:09,479 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 08:23:38] 2026-01-10 07:23:09,625 | INFO     | [payload] control thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:09,645 | INFO     | [job] validate thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:09,708 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:09,735 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:10,634 | INFO     | [data] copytool_out thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:13,486 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:17,280 | INFO     | job.realtimelogging is not enabled
[2026-01-10 08:23:38] 2026-01-10 07:23:18,286 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 08:23:38] 2026-01-10 07:23:29,121 | INFO     | [monitor] cgroup control has ended
[2026-01-10 08:23:38] 2026-01-10 07:23:30,572 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140523775170368)>', '<ExcThread(monitor, started 140522983245568)>']
[2026-01-10 08:23:38] 2026-01-10 07:23:35,598 | INFO     | all workflow threads have been joined
[2026-01-10 08:23:38] 2026-01-10 07:23:35,598 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 08:23:38] 2026-01-10 07:23:35,598 | INFO     | traces error code: 0
[2026-01-10 08:23:38] 2026-01-10 07:23:35,599 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 08:23:38] 2026-01-10 07:23:37,889 | INFO     | PID=2156653 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 08:23:38] 2026-01-10 07:23:37,889 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 08:23:38] 2026-01-10 07:23:37,889 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 08:23:38] 2026-01-10 07:23:37,889 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 08:23:38] 2026-01-10 07:23:37,889 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 08:23:38] 2026-01-10 07:23:37,889 | INFO     | [monitor] control thread has ended
[2026-01-10 08:23:38] 2026-01-10 07:23:37,940 [wrapper] ==== pilot stdout END ====
[2026-01-10 08:23:38] 2026-01-10 07:23:37,943 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 08:23:38] 2026-01-10 07:23:37,946 [wrapper] pilotpid: 2156653
[2026-01-10 08:23:38] 2026-01-10 07:23:37,948 [wrapper] Pilot exit status: 0
[2026-01-10 08:23:38] 2026-01-10 07:23:37,956 [wrapper] pandaids: 6964048966
[2026-01-10 08:23:38] 2026-01-10 07:23:37,974 [wrapper] cleanup supervisor_pilot 2175459 2156654
[2026-01-10 08:23:38] 2026-01-10 07:23:37,977 [wrapper] Test setup, not cleaning
[2026-01-10 08:23:38] 2026-01-10 07:23:37,979 [wrapper] apfmon messages muted
[2026-01-10 08:23:38] 2026-01-10 07:23:37,982 [wrapper] ==== wrapper stdout END ====
[2026-01-10 08:23:38] 2026-01-10 07:23:37,984 [wrapper] ==== wrapper stderr END ====
[2026-01-10 08:23:38]  *** Error codes and diagnostics ***
[2026-01-10 08:23:38]     "exeErrorCode": 0,
[2026-01-10 08:23:38]     "exeErrorDiag": "",
[2026-01-10 08:23:38]     "pilotErrorCode": 0,
[2026-01-10 08:23:38]     "pilotErrorDiag": "",
[2026-01-10 08:23:38]  *** Listing of results directory ***
[2026-01-10 08:23:38] total 440544
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc    579449 Jan  9 08:13 pilot3.tar.gz
[2026-01-10 08:23:38] -rwx------ 1 boinc boinc     36322 Jan  9 08:14 runpilot2-wrapper.sh
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc      5112 Jan  9 08:16 queuedata.json
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc       100 Jan 10 06:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 08:23:38] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 06:57 run_atlas
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc       105 Jan 10 06:57 job.xml
[2026-01-10 08:23:38] -rw-r--r-- 2 boinc boinc 225375267 Jan 10 06:57 EVNT.47898824._001122.pool.root.1
[2026-01-10 08:23:38] -rw-r--r-- 2 boinc boinc    592400 Jan 10 06:57 input.tar.gz
[2026-01-10 08:23:38] -rw-r--r-- 2 boinc boinc     15847 Jan 10 06:57 start_atlas.sh
[2026-01-10 08:23:38] drwxrwx--x 2 boinc boinc      4096 Jan 10 06:57 shared
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc         0 Jan 10 06:57 boinc_setup_complete
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc      6438 Jan 10 06:57 init_data.xml
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc         0 Jan 10 06:57 boinc_lockfile
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc      2520 Jan 10 06:57 pandaJob.out
[2026-01-10 08:23:38] -rw------- 1 boinc boinc    989374 Jan 10 06:57 agis_schedconf.cvmfs.json
[2026-01-10 08:23:38] -rw------- 1 boinc boinc   1516240 Jan 10 06:57 agis_ddmendpoints.agis.ALL.json
[2026-01-10 08:23:38] drwx------ 5 boinc boinc      4096 Jan 10 06:57 pilot3
[2026-01-10 08:23:38] -rw------- 1 boinc boinc 219788721 Jan 10 08:22 HITS.47898826._039911.pool.root.1
[2026-01-10 08:23:38] -rw------- 1 boinc boinc        95 Jan 10 08:22 pilot_heartbeat.json
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc       530 Jan 10 08:22 boinc_task_state.xml
[2026-01-10 08:23:38] -rw------- 1 boinc boinc      1024 Jan 10 08:22 memory_monitor_summary.json
[2026-01-10 08:23:38] -rw------- 1 boinc boinc    275921 Jan 10 08:22 log.47898826._039911.job.log.tgz.1
[2026-01-10 08:23:38] -rw------- 1 boinc boinc      7751 Jan 10 08:23 heartbeat.json
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc      8192 Jan 10 08:23 boinc_mmap_file
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc        27 Jan 10 08:23 wrapper_checkpoint.txt
[2026-01-10 08:23:38] -rw------- 1 boinc boinc       747 Jan 10 08:23 pilotlog.txt
[2026-01-10 08:23:38] -rw------- 1 boinc boinc    753247 Jan 10 08:23 log.47898826._039911.job.log.1
[2026-01-10 08:23:38] -rw------- 1 boinc boinc       357 Jan 10 08:23 output.list
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc       620 Jan 10 08:23 runtime_log
[2026-01-10 08:23:38] -rw------- 1 boinc boinc   1044480 Jan 10 08:23 result.tar.gz
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc      8917 Jan 10 08:23 runtime_log.err
[2026-01-10 08:23:38] -rw------- 1 boinc boinc       662 Jan 10 08:23 j39MDm6sLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkVmKDmRAlUcm.diag
[2026-01-10 08:23:38] -rw-r--r-- 1 boinc boinc     11209 Jan 10 08:23 stderr.txt
[2026-01-10 08:23:38] HITS file was successfully produced:
[2026-01-10 08:23:38] -rw------- 1 boinc boinc 219788721 Jan 10 08:22 shared/HITS.pool.root.1
[2026-01-10 08:23:38]  *** Contents of shared directory: ***
[2026-01-10 08:23:38] total 436360
[2026-01-10 08:23:38] -rw-r--r-- 2 boinc boinc 225375267 Jan 10 06:57 ATLAS.root_0
[2026-01-10 08:23:38] -rw-r--r-- 2 boinc boinc    592400 Jan 10 06:57 input.tar.gz
[2026-01-10 08:23:38] -rw-r--r-- 2 boinc boinc     15847 Jan 10 06:57 start_atlas.sh
[2026-01-10 08:23:38] -rw------- 1 boinc boinc 219788721 Jan 10 08:22 HITS.pool.root.1
[2026-01-10 08:23:38] -rw------- 1 boinc boinc   1044480 Jan 10 08:23 result.tar.gz
08:23:39 (2152874): run_atlas exited; CPU time 19611.248583
08:23:39 (2152874): called boinc_finish(0)

</stderr_txt>
]]>

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