Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:27:55 (10039): wrapper (7.7.26015): starting
02:27:55 (10039): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 02:27:56] Arguments: --nthreads 8
[2026-01-10 02:27:56] Threads: 8
[2026-01-10 02:27:56] Checking for CVMFS
[2026-01-10 02:27:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:27:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:27:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:27:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:27:56] 2.11.0.0 5113 129650 82792 154963 2 1 3131830 4096000 0 130560 2 4271603 99.218 7663799 515 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 02:27:56] CVMFS is ok
[2026-01-10 02:27:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:27:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:27:56] Further information can be found at the LHC@home message board.
[2026-01-10 02:27:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:27:56] Checking for apptainer binary...
[2026-01-10 02:27:56] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 02:27:56] apptainer is not installed, using version from CVMFS
[2026-01-10 02:27:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:28:24] WARNING: Environment variable TMPDIR already has value [/tmp/job_11009926/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node334
[2026-01-10 02:28:24] apptainer works
[2026-01-10 02:28:24] Set ATHENA_PROC_NUMBER=8
[2026-01-10 02:28:24] Set ATHENA_CORE_NUMBER=8
[2026-01-10 02:28:24] Starting ATLAS job with PandaID=6963169977
[2026-01-10 02:28:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11009926/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 05:09:36]  *** The last 200 lines of the pilot log: ***
[2026-01-10 05:09:36] 2026-01-10 04:08:53,074 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 05:09:36] 2026-01-10 04:08:53,378 | INFO     | time since job start (9578s) is within the limit (349056.0s)
[2026-01-10 05:09:36] 2026-01-10 04:08:53,618 | INFO     | monitor loop #710: job 0:6963169977 is in state 'finished'
[2026-01-10 05:09:36] 2026-01-10 04:08:53,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,052 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 05:09:36] 2026-01-10 04:08:55,068 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2380.603671875
[2026-01-10 05:09:36] 2026-01-10 04:08:55,073 | INFO     | using path: /tmp/job_11009926/atlas/pilot/slots/0/PanDA_Pilot-6963169977/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,073 | INFO     | extracted standard info from prmon json
[2026-01-10 05:09:36] 2026-01-10 04:08:55,073 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 05:09:36] 2026-01-10 04:08:55,073 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 05:09:36] 2026-01-10 04:08:55,075 | INFO     | fitting pss+swap vs Time
[2026-01-10 05:09:36] 2026-01-10 04:08:55,075 | INFO     | sum of square deviations: 1199933807.9745193
[2026-01-10 05:09:36] 2026-01-10 04:08:55,075 | INFO     | sum of deviations: 189084799022.22302
[2026-01-10 05:09:36] 2026-01-10 04:08:55,075 | INFO     | mean x: 1768013361.012739
[2026-01-10 05:09:36] 2026-01-10 04:08:55,076 | INFO     | mean y: 3052645.388535032
[2026-01-10 05:09:36] 2026-01-10 04:08:55,076 | INFO     | intersect: -278599357599.2254
[2026-01-10 05:09:36] 2026-01-10 04:08:55,076 | INFO     | chi2: 4.575610200665489
[2026-01-10 05:09:36] 2026-01-10 04:08:55,076 | INFO     | sum of square deviations: 1088899777.9736817
[2026-01-10 05:09:36] 2026-01-10 04:08:55,076 | INFO     | sum of deviations: 206399398415.77637
[2026-01-10 05:09:36] 2026-01-10 04:08:55,076 | INFO     | mean x: 1768013208.5131578
[2026-01-10 05:09:36] 2026-01-10 04:08:55,076 | INFO     | mean y: 3075514.361842105
[2026-01-10 05:09:36] 2026-01-10 04:08:55,076 | INFO     | intersect: -335121304166.68744
[2026-01-10 05:09:36] 2026-01-10 04:08:55,077 | INFO     | chi2: 2.9802629112195334
[2026-01-10 05:09:36] 2026-01-10 04:08:55,077 | INFO     | current chi2=2.9802629112195334 (change=34.866328631182874 %)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,077 | INFO     | sum of square deviations: 984935647.9727925
[2026-01-10 05:09:36] 2026-01-10 04:08:55,077 | INFO     | sum of deviations: 180111597606.0476
[2026-01-10 05:09:36] 2026-01-10 04:08:55,077 | INFO     | mean x: 1768013056.0136054
[2026-01-10 05:09:36] 2026-01-10 04:08:55,077 | INFO     | mean y: 3036985.476190476
[2026-01-10 05:09:36] 2026-01-10 04:08:55,077 | INFO     | intersect: -323307076484.7568
[2026-01-10 05:09:36] 2026-01-10 04:08:55,077 | INFO     | chi2: 2.913791626571276
[2026-01-10 05:09:36] 2026-01-10 04:08:55,077 | INFO     | current chi2=2.913791626571276 (change=2.2303832456532198 %)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,077 | INFO     | right removable region: 146
[2026-01-10 05:09:36] 2026-01-10 04:08:55,078 | INFO     | sum of square deviations: 1088898557.9736817
[2026-01-10 05:09:36] 2026-01-10 04:08:55,078 | INFO     | sum of deviations: 137712619272.9737
[2026-01-10 05:09:36] 2026-01-10 04:08:55,078 | INFO     | mean x: 1768013513.5131578
[2026-01-10 05:09:36] 2026-01-10 04:08:55,078 | INFO     | mean y: 3122769.013157895
[2026-01-10 05:09:36] 2026-01-10 04:08:55,078 | INFO     | intersect: -223596927091.4577
[2026-01-10 05:09:36] 2026-01-10 04:08:55,078 | INFO     | chi2: 2.0372329182269677
[2026-01-10 05:09:36] 2026-01-10 04:08:55,078 | INFO     | current chi2=2.0372329182269677 (change=55.47625717919181 %)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,078 | INFO     | sum of square deviations: 984933207.9727925
[2026-01-10 05:09:36] 2026-01-10 04:08:55,079 | INFO     | sum of deviations: 123883930885.04083
[2026-01-10 05:09:36] 2026-01-10 04:08:55,079 | INFO     | mean x: 1768013666.0136054
[2026-01-10 05:09:36] 2026-01-10 04:08:55,079 | INFO     | mean y: 3143009.9795918367
[2026-01-10 05:09:36] 2026-01-10 04:08:55,079 | INFO     | intersect: -222375878258.93018
[2026-01-10 05:09:36] 2026-01-10 04:08:55,079 | INFO     | chi2: 2.034122637263284
[2026-01-10 05:09:36] 2026-01-10 04:08:55,079 | INFO     | current chi2=2.034122637263284 (change=0.15267183913318766 %)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,079 | INFO     | left removable region: 20
[2026-01-10 05:09:36] 2026-01-10 04:08:55,079 | INFO     | sum of square deviations: 620244981.4920647
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | sum of deviations: 97103408877.49205
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | mean x: 1768013635.5079365
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | mean y: 3161380.507936508
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | intersect: -276790937842.534
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | chi2: 0.22373995755196402
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | current memory leak: 156.56 B/s (using 126 data points, chi2=0.22)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | could have reported an average CPU frequency of 2557 MHz (9 samples)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | ..............................
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | . Timing measurements:
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | . get job = 0 s
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | . initial setup = 5 s
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | . payload setup = 30 s
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | . stage-in = 0 s
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | . payload execution = 9528 s
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | . stage-out = 0 s
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | . log creation = 0 s
[2026-01-10 05:09:36] 2026-01-10 04:08:55,080 | INFO     | ..............................
[2026-01-10 05:09:36] 2026-01-10 04:08:55,129 | INFO     | 
[2026-01-10 05:09:36] 2026-01-10 04:08:55,129 | INFO     | job summary report
[2026-01-10 05:09:36] 2026-01-10 04:08:55,129 | INFO     | --------------------------------------------------
[2026-01-10 05:09:36] 2026-01-10 04:08:55,129 | INFO     | PanDA job id: 6963169977
[2026-01-10 05:09:36] 2026-01-10 04:08:55,129 | INFO     | task id: 47962010
[2026-01-10 05:09:36] 2026-01-10 04:08:55,129 | INFO     | errors: (none)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,129 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | pilot state: finished 
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | transexitcode: 0
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | exeerrorcode: 0
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | exeerrordiag: 
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | exitcode: 0
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | exitmsg: OK
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | cpuconsumptiontime: 64496 s
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | nevents: 450
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | neventsw: 0
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | pid: 9989
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | pgrp: 9989
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | corecount: 8
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | event service: False
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | sizes: {0: 2284744, 3: 2285006, 11: 2285034, 9562: 2314243, 9563: 2323267, 9565: 2323323, 9567: 2323761}
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | --------------------------------------------------
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | 
[2026-01-10 05:09:36] 2026-01-10 04:08:55,130 | INFO     | executing command: ls -lF /tmp/job_11009926/atlas/pilot/slots/0
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,139 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,140 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,140 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,140 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,140 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 05:09:36] 2026-01-10 04:08:55,140 | INFO     | job 6963169977 has completed (purged errors)
[2026-01-10 05:09:36] 2026-01-10 04:08:55,140 | INFO     | overall cleanup function is called
[2026-01-10 05:09:36] 2026-01-10 04:08:56,147 | INFO     | --- collectZombieJob: --- 10, [9989]
[2026-01-10 05:09:36] 2026-01-10 04:08:56,147 | INFO     | zombie collector waiting for pid 9989
[2026-01-10 05:09:36] 2026-01-10 04:08:56,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 05:09:36] 2026-01-10 04:08:56,147 | INFO     | collected zombie processes
[2026-01-10 05:09:36] 2026-01-10 04:08:56,147 | INFO     | will attempt to kill all subprocesses of pid=9989
[2026-01-10 05:09:36] 2026-01-10 04:08:56,233 | INFO     | process IDs to be killed: [9989] (in reverse order)
[2026-01-10 05:09:36] 2026-01-10 04:08:56,261 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 05:09:36] 2026-01-10 04:08:56,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 05:09:36] 2026-01-10 04:08:56,265 | INFO     | did not find any defunct processes belonging to 9989
[2026-01-10 05:09:36] 2026-01-10 04:08:56,267 | INFO     | did not find any defunct processes belonging to 9989
[2026-01-10 05:09:36] 2026-01-10 04:08:56,267 | INFO     | ready for new job
[2026-01-10 05:09:36] 2026-01-10 04:08:56,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 05:09:36] 2026-01-10 04:08:56,268 | INFO     | ***************************************
[2026-01-10 05:09:36] 2026-01-10 04:08:56,268 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 05:09:36] 2026-01-10 04:08:56,268 | INFO     | ***************************************
[2026-01-10 05:09:36] 2026-01-10 04:08:56,268 | INFO     | 
[2026-01-10 05:09:36] 2026-01-10 04:08:56,281 | INFO     | architecture information:
[2026-01-10 05:09:36] 2026-01-10 04:08:56,282 | INFO     | executing command: cat /etc/os-release
[2026-01-10 05:09:36] 2026-01-10 04:08:56,287 | INFO     | cat /etc/os-release:
[2026-01-10 05:09:36] NAME="CentOS Linux"
[2026-01-10 05:09:36] VERSION="7 (Core)"
[2026-01-10 05:09:36] ID="centos"
[2026-01-10 05:09:36] ID_LIKE="rhel fedora"
[2026-01-10 05:09:36] VERSION_ID="7"
[2026-01-10 05:09:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 05:09:36] ANSI_COLOR="0;31"
[2026-01-10 05:09:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 05:09:36] HOME_URL="https://www.centos.org/"
[2026-01-10 05:09:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 05:09:36] 
[2026-01-10 05:09:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 05:09:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 05:09:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 05:09:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 05:09:36] 
[2026-01-10 05:09:36] 2026-01-10 04:08:56,287 | INFO     | ***************************************
[2026-01-10 05:09:36] 2026-01-10 04:08:56,790 | INFO     | executing command: df -mP /tmp/job_11009926/atlas/pilot/slots/0
[2026-01-10 05:09:36] 2026-01-10 04:08:56,796 | INFO     | sufficient remaining disk space (227997122560 B)
[2026-01-10 05:09:36] 2026-01-10 04:08:56,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 05:09:36] 2026-01-10 04:08:56,796 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 05:09:36] 2026-01-10 04:08:56,796 | INFO     | update_server=False
[2026-01-10 05:09:36] 2026-01-10 04:08:56,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 05:09:36] 2026-01-10 04:08:56,796 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:09:36] 2026-01-10 04:08:56,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 05:09:36] 2026-01-10 04:08:57,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:09:36] 2026-01-10 04:08:57,126 | INFO     | aborting loop
[2026-01-10 05:09:36] 2026-01-10 04:08:57,675 | INFO     | all data control threads have been joined
[2026-01-10 05:09:36] 2026-01-10 04:08:57,799 | INFO     | [job] queue monitor thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:57,801 | INFO     | [job] retrieve thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:57,853 | INFO     | all job control threads have been joined
[2026-01-10 05:09:36] 2026-01-10 04:08:57,949 | INFO     | [payload] failed_post thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:57,949 | INFO     | all payload control threads have been joined
[2026-01-10 05:09:36] 2026-01-10 04:08:58,131 | INFO     | [job] job monitor thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:58,681 | INFO     | [data] control thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:58,702 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:58,766 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:58,804 | INFO     | [data] copytool_out thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:58,859 | INFO     | [job] control thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:58,894 | INFO     | [job] validate thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:58,954 | INFO     | [payload] control thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:58,984 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:59,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 05:09:36] 2026-01-10 04:08:59,250 | INFO     | [payload] validate_post thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:08:59,279 | INFO     | [data] copytool_in thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:09:03,054 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:09:07,813 | INFO     | job.realtimelogging is not enabled
[2026-01-10 05:09:36] 2026-01-10 04:09:08,818 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 05:09:36] 2026-01-10 04:09:26,555 | INFO     | PID=17938 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 05:09:36] 2026-01-10 04:09:26,555 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 05:09:36] 2026-01-10 04:09:26,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 05:09:36] 2026-01-10 04:09:26,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 05:09:36] 2026-01-10 04:09:30,093 | INFO     | [monitor] cgroup control has ended
[2026-01-10 05:09:36] 2026-01-10 04:09:31,620 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2026-01-10 05:09:36] 2026-01-10 04:09:32,585 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 05:09:36] 2026-01-10 04:09:32,585 | INFO     | [monitor] control thread has ended
[2026-01-10 05:09:36] 2026-01-10 04:09:36,646 | INFO     | all workflow threads have been joined
[2026-01-10 05:09:36] 2026-01-10 04:09:36,646 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 05:09:36] 2026-01-10 04:09:36,646 | INFO     | traces error code: 0
[2026-01-10 05:09:36] 2026-01-10 04:09:36,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 05:09:36] 2026-01-10 04:09:36,698 [wrapper] ==== pilot stdout END ====
[2026-01-10 05:09:36] 2026-01-10 04:09:36,699 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 05:09:36] 2026-01-10 04:09:36,701 [wrapper] pilotpid: 17938
[2026-01-10 05:09:36] 2026-01-10 04:09:36,702 [wrapper] Pilot exit status: 0
[2026-01-10 05:09:36] 2026-01-10 04:09:36,706 [wrapper] pandaids: 6963169977
[2026-01-10 05:09:36] 2026-01-10 04:09:36,724 [wrapper] cleanup supervisor_pilot 32109 17940
[2026-01-10 05:09:36] 2026-01-10 04:09:36,725 [wrapper] Test setup, not cleaning
[2026-01-10 05:09:36] 2026-01-10 04:09:36,727 [wrapper] apfmon messages muted
[2026-01-10 05:09:36] 2026-01-10 04:09:36,728 [wrapper] ==== wrapper stdout END ====
[2026-01-10 05:09:36] 2026-01-10 04:09:36,729 [wrapper] ==== wrapper stderr END ====
[2026-01-10 05:09:36]  *** Error codes and diagnostics ***
[2026-01-10 05:09:36]     "exeErrorCode": 0,
[2026-01-10 05:09:36]     "exeErrorDiag": "",
[2026-01-10 05:09:36]     "pilotErrorCode": 0,
[2026-01-10 05:09:36]     "pilotErrorDiag": "",
[2026-01-10 05:09:36]  *** Listing of results directory ***
[2026-01-10 05:09:36] total 777996
[2026-01-10 05:09:36] -rwx------ 1 mf493845 unix-user     36322 Jan  9 08:16 runpilot2-wrapper.sh
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user      5112 Jan  9 08:20 queuedata.json
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user       100 Jan 10 00:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 05:09:36] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 00:48 run_atlas
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user       105 Jan 10 00:48 job.xml
[2026-01-10 05:09:36] -rw-r--r-- 2 mf493845 unix-user 390768179 Jan 10 02:27 EVNT.47962006._000052.pool.root.1
[2026-01-10 05:09:36] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:27 start_atlas.sh
[2026-01-10 05:09:36] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 02:27 shared
[2026-01-10 05:09:36] -rw-r--r-- 2 mf493845 unix-user    592615 Jan 10 02:27 input.tar.gz
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user      6390 Jan 10 02:27 init_data.xml
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user         0 Jan 10 02:27 boinc_setup_complete
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user      8192 Jan 10 02:27 boinc_mmap_file
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user         0 Jan 10 02:27 boinc_lockfile
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user      2890 Jan 10 02:28 pandaJob.out
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user    989382 Jan 10 02:29 agis_schedconf.cvmfs.json
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user   1516240 Jan 10 02:29 agis_ddmendpoints.agis.ALL.json
[2026-01-10 05:09:36] drwx------ 5 mf493845 unix-user       440 Jan 10 02:29 pilot3
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user 396520127 Jan 10 05:08 HITS.47962010._000477.pool.root.1
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user        95 Jan 10 05:08 pilot_heartbeat.json
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user      1025 Jan 10 05:08 memory_monitor_summary.json
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user   1347110 Jan 10 05:08 log.47962010._000477.job.log.tgz.1
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user      8563 Jan 10 05:08 heartbeat.json
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user      4832 Jan 10 05:09 pilotlog.txt
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user   1397393 Jan 10 05:09 log.47962010._000477.job.log.1
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user       353 Jan 10 05:09 output.list
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user       620 Jan 10 05:09 runtime_log
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user   2764800 Jan 10 05:09 result.tar.gz
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user       646 Jan 10 05:09 uuUMDm3uLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUZmKDmATFRMn.diag
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user      9220 Jan 10 05:09 runtime_log.err
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user     21759 Jan 10 05:09 stderr.txt
[2026-01-10 05:09:36] HITS file was successfully produced:
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user 396520127 Jan 10 05:08 shared/HITS.pool.root.1
[2026-01-10 05:09:36]  *** Contents of shared directory: ***
[2026-01-10 05:09:36] total 772136
[2026-01-10 05:09:36] -rw-r--r-- 2 mf493845 unix-user 390768179 Jan 10 02:27 ATLAS.root_0
[2026-01-10 05:09:36] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:27 start_atlas.sh
[2026-01-10 05:09:36] -rw-r--r-- 2 mf493845 unix-user    592615 Jan 10 02:27 input.tar.gz
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user 396520127 Jan 10 05:08 HITS.pool.root.1
[2026-01-10 05:09:36] -rw------- 1 mf493845 unix-user   2764800 Jan 10 05:09 result.tar.gz
05:09:38 (10039): run_atlas exited; CPU time 64567.110996
05:09:38 (10039): called boinc_finish(0)

</stderr_txt>
]]>

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