Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:22:17 (3452499): wrapper (7.7.26015): starting
14:22:17 (3452499): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 14:22:17] Arguments: --nthreads 3
[2026-01-10 14:22:17] Threads: 3
[2026-01-10 14:22:17] Checking for CVMFS
[2026-01-10 14:22:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 14:22:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 14:22:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 14:22:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 14:22:17] 2.9.2.0 2563955 3858 86784 154981 2 56 23000972 36864001 0 130560 0 2330386 99.988 142524 3424 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 14:22:17] CVMFS is ok
[2026-01-10 14:22:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 14:22:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 14:22:17] Further information can be found at the LHC@home message board.
[2026-01-10 14:22:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 14:22:17] Checking for apptainer binary...
[2026-01-10 14:22:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 14:22:17] Running /usr/bin/apptainer --version
[2026-01-10 14:22:17] apptainer version 1.4.1-1.1
[2026-01-10 14:22:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 14:22:17] thA349
[2026-01-10 14:22:17] apptainer works
[2026-01-10 14:22:17] Set ATHENA_PROC_NUMBER=3
[2026-01-10 14:22:17] Set ATHENA_CORE_NUMBER=3
[2026-01-10 14:22:17] Starting ATLAS job with PandaID=6963381818
[2026-01-10 14:22:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 23:00:04]  *** The last 200 lines of the pilot log: ***
[2026-01-10 23:00:04] 2026-01-10 21:59:25,258 | INFO     | did not find any defunct processes belonging to 3462663
[2026-01-10 23:00:04] 2026-01-10 21:59:25,260 | INFO     | did not find any defunct processes belonging to 3462663
[2026-01-10 23:00:04] 2026-01-10 21:59:25,260 | INFO     | ready for new job
[2026-01-10 23:00:04] 2026-01-10 21:59:25,260 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 23:00:04] 2026-01-10 21:59:25,261 | INFO     | ***************************************
[2026-01-10 23:00:04] 2026-01-10 21:59:25,261 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 23:00:04] 2026-01-10 21:59:25,261 | INFO     | ***************************************
[2026-01-10 23:00:04] 2026-01-10 21:59:25,261 | INFO     | 
[2026-01-10 23:00:04] 2026-01-10 21:59:25,261 | INFO     | architecture information:
[2026-01-10 23:00:04] 2026-01-10 21:59:25,262 | INFO     | executing command: cat /etc/os-release
[2026-01-10 23:00:04] 2026-01-10 21:59:25,270 | INFO     | cat /etc/os-release:
[2026-01-10 23:00:04] NAME="CentOS Linux"
[2026-01-10 23:00:04] VERSION="7 (Core)"
[2026-01-10 23:00:04] ID="centos"
[2026-01-10 23:00:04] ID_LIKE="rhel fedora"
[2026-01-10 23:00:04] VERSION_ID="7"
[2026-01-10 23:00:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 23:00:04] ANSI_COLOR="0;31"
[2026-01-10 23:00:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 23:00:04] HOME_URL="https://www.centos.org/"
[2026-01-10 23:00:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 23:00:04] 
[2026-01-10 23:00:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 23:00:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 23:00:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 23:00:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 23:00:04] 
[2026-01-10 23:00:04] 2026-01-10 21:59:25,270 | INFO     | ***************************************
[2026-01-10 23:00:04] 2026-01-10 21:59:25,773 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 23:00:04] 2026-01-10 21:59:25,785 | INFO     | sufficient remaining disk space (282014515200 B)
[2026-01-10 23:00:04] 2026-01-10 21:59:25,786 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 23:00:04] 2026-01-10 21:59:25,786 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 23:00:04] 2026-01-10 21:59:25,786 | INFO     | update_server=False
[2026-01-10 23:00:04] 2026-01-10 21:59:25,786 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 23:00:04] 2026-01-10 21:59:25,786 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 23:00:04] 2026-01-10 21:59:25,918 | INFO     | all data control threads have been joined
[2026-01-10 23:00:04] 2026-01-10 21:59:26,077 | INFO     | all payload control threads have been joined
[2026-01-10 23:00:04] 2026-01-10 21:59:26,194 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 23:00:04] 2026-01-10 21:59:26,194 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 23:00:04] 2026-01-10 21:59:26,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 23:00:04] 2026-01-10 21:59:26,194 | INFO     | will abort loop
[2026-01-10 23:00:04] 2026-01-10 21:59:26,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 23:00:04] 2026-01-10 21:59:26,792 | INFO     | [job] queue monitor thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:26,792 | INFO     | [job] retrieve thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:26,866 | INFO     | [payload] failed_post thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:26,924 | INFO     | [data] control thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:27,083 | INFO     | [payload] control thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:27,200 | INFO     | [job] job monitor thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:27,202 | INFO     | all job control threads have been joined
[2026-01-10 23:00:04] 2026-01-10 21:59:27,277 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 23:00:04] 2026-01-10 21:59:27,296 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:27,680 | INFO     | [data] copytool_in thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:27,927 | INFO     | [payload] validate_post thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:28,060 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:28,189 | INFO     | [job] validate thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:28,208 | INFO     | [job] control thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:28,225 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:28,230 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:28,631 | INFO     | [data] copytool_out thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:31,284 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 23:00:04] 2026-01-10 21:59:55,742 | INFO     | PID=3456222 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 23:00:04] 2026-01-10 21:59:55,743 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 23:00:04] 2026-01-10 21:59:55,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 23:00:04] 2026-01-10 21:59:55,743 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 23:00:04] 2026-01-10 21:59:58,855 | INFO     | [monitor] cgroup control has ended
[2026-01-10 23:00:04] 2026-01-10 21:59:59,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140515596068672)>', '<ExcThread(monitor, started 140515248940800)>']
[2026-01-10 23:00:04] 2026-01-10 21:59:59,764 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 23:00:04] 2026-01-10 21:59:59,765 | INFO     | [monitor] control thread has ended
[2026-01-10 23:00:04] 2026-01-10 22:00:04,373 | INFO     | all workflow threads have been joined
[2026-01-10 23:00:04] 2026-01-10 22:00:04,373 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 23:00:04] 2026-01-10 22:00:04,373 | INFO     | traces error code: 0
[2026-01-10 23:00:04] 2026-01-10 22:00:04,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 23:00:04] 2026-01-10 22:00:04,423 [wrapper] ==== pilot stdout END ====
[2026-01-10 23:00:04] 2026-01-10 22:00:04,425 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 23:00:04] 2026-01-10 22:00:04,427 [wrapper] pilotpid: 3456222
[2026-01-10 23:00:04] 2026-01-10 22:00:04,429 [wrapper] Pilot exit status: 0
[2026-01-10 23:00:04] 2026-01-10 22:00:04,436 [wrapper] pandaids: 6963381818
[2026-01-10 23:00:04] 2026-01-10 22:00:04,452 [wrapper] cleanup supervisor_pilot 3516594 3456223
[2026-01-10 23:00:04] 2026-01-10 22:00:04,454 [wrapper] Test setup, not cleaning
[2026-01-10 23:00:04] 2026-01-10 22:00:04,457 [wrapper] apfmon messages muted
[2026-01-10 23:00:04] 2026-01-10 22:00:04,459 [wrapper] ==== wrapper stdout END ====
[2026-01-10 23:00:04] 2026-01-10 22:00:04,461 [wrapper] ==== wrapper stderr END ====
[2026-01-10 23:00:04]  *** Error codes and diagnostics ***
[2026-01-10 23:00:04]     "exeErrorCode": 0,
[2026-01-10 23:00:04]     "exeErrorDiag": "",
[2026-01-10 23:00:04]     "pilotErrorCode": 0,
[2026-01-10 23:00:04]     "pilotErrorDiag": "",
[2026-01-10 23:00:04]  *** Listing of results directory ***
[2026-01-10 23:00:04] total 1182728
[2026-01-10 23:00:04] -rwx------ 1 boinc boinc     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc      5112 Jan  9 08:21 queuedata.json
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc       100 Jan 10 14:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 23:00:04] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 14:22 run_atlas
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc       105 Jan 10 14:22 job.xml
[2026-01-10 23:00:04] -rw-r--r-- 2 boinc boinc 392806840 Jan 10 14:22 EVNT.47962006._000123.pool.root.1
[2026-01-10 23:00:04] drwxrwx--x 2 boinc boinc      4096 Jan 10 14:22 shared
[2026-01-10 23:00:04] -rw-r--r-- 2 boinc boinc    592617 Jan 10 14:22 input.tar.gz
[2026-01-10 23:00:04] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:22 start_atlas.sh
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:22 boinc_setup_complete
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc      6445 Jan 10 14:22 init_data.xml
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:22 boinc_lockfile
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc      2891 Jan 10 14:22 pandaJob.out
[2026-01-10 23:00:04] -rw------- 1 boinc boinc    989556 Jan 10 14:22 agis_schedconf.cvmfs.json
[2026-01-10 23:00:04] drwx------ 5 boinc boinc      4096 Jan 10 14:22 pilot3
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc       531 Jan 10 22:56 boinc_task_state.xml
[2026-01-10 23:00:04] -rw------- 1 boinc boinc 803313727 Jan 10 22:58 HITS.47962010._001766.pool.root.1
[2026-01-10 23:00:04] -rw------- 1 boinc boinc      1029 Jan 10 22:59 memory_monitor_summary.json
[2026-01-10 23:00:04] -rw------- 1 boinc boinc   1516240 Jan 10 22:59 agis_ddmendpoints.agis.ALL.json
[2026-01-10 23:00:04] -rw------- 1 boinc boinc   1172668 Jan 10 22:59 log.47962010._001766.job.log.tgz.1
[2026-01-10 23:00:04] -rw------- 1 boinc boinc      8546 Jan 10 22:59 heartbeat.json
[2026-01-10 23:00:04] -rw------- 1 boinc boinc        95 Jan 10 22:59 pilot_heartbeat.json
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc      8192 Jan 10 23:00 boinc_mmap_file
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc        28 Jan 10 23:00 wrapper_checkpoint.txt
[2026-01-10 23:00:04] -rw------- 1 boinc boinc      4938 Jan 10 23:00 pilotlog.txt
[2026-01-10 23:00:04] -rw------- 1 boinc boinc   4366746 Jan 10 23:00 log.47962010._001766.job.log.1
[2026-01-10 23:00:04] -rw------- 1 boinc boinc       353 Jan 10 23:00 output.list
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc       620 Jan 10 23:00 runtime_log
[2026-01-10 23:00:04] -rw------- 1 boinc boinc   5560320 Jan 10 23:00 result.tar.gz
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc      8898 Jan 10 23:00 runtime_log.err
[2026-01-10 23:00:04] -rw------- 1 boinc boinc       665 Jan 10 23:00 TNDMDmRvLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmddmKDm53nljm.diag
[2026-01-10 23:00:04] -rw-r--r-- 1 boinc boinc      9986 Jan 10 23:00 stderr.txt
[2026-01-10 23:00:04] HITS file was successfully produced:
[2026-01-10 23:00:04] -rw------- 1 boinc boinc 803313727 Jan 10 22:58 shared/HITS.pool.root.1
[2026-01-10 23:00:04]  *** Contents of shared directory: ***
[2026-01-10 23:00:04] total 1174128
[2026-01-10 23:00:04] -rw-r--r-- 2 boinc boinc 392806840 Jan 10 14:22 ATLAS.root_0
[2026-01-10 23:00:04] -rw-r--r-- 2 boinc boinc    592617 Jan 10 14:22 input.tar.gz
[2026-01-10 23:00:04] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:22 start_atlas.sh
[2026-01-10 23:00:04] -rw------- 1 boinc boinc 803313727 Jan 10 22:58 HITS.pool.root.1
[2026-01-10 23:00:04] -rw------- 1 boinc boinc   5560320 Jan 10 23:00 result.tar.gz
23:00:06 (3452499): run_atlas exited; CPU time 91748.476492
23:00:06 (3452499): called boinc_finish(0)

</stderr_txt>
]]>

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